|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-225 |
2.12e-100 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 294.28 E-value: 2.12e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTE 81
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLPRkeaRERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 159 GLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKYLKDV 225
Cdd:COG1131 161 GLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARLLEDV 226
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-224 |
2.02e-82 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 249.00 E-value: 2.02e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVT 80
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:COG4555 81 DERGLYDRLTVRENIRYFAELYGLFDeelKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 158 NGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKYLKD 224
Cdd:COG4555 161 NGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEE 226
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-208 |
4.84e-74 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 224.97 E-value: 4.84e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTE 81
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSffadlygvkekartaellelfdlaehkdkpagtYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:cd03230 81 EPSLYENLTVRENLK---------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 917220261 162 PDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTI 208
Cdd:cd03230 128 PESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-299 |
4.05e-71 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 221.91 E-value: 4.05e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDpatSGDEIRKLSGVVT 80
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEP---LDPEDRRRIGYLP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:COG4152 78 EERGLYPKMKVGEQLVYLARLKGLSKaeaKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 158 NGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKY-LKDVKVRVLTEPAMI 236
Cdd:COG4152 158 SGLDPVNVELLKDVIREL-AAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFgRNTLRLEADGDAGWL 236
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 237 QRDAASFPFDQlKPGEAVFTLPSKEHISGLLKELLKKHSIYSAEMVNSGLEAIYFKVREKHNE 299
Cdd:COG4152 237 RALPGVTVVEE-DGDGAELKLEDGADAQELLRALLARGPVREFEEVRPSLNEIFIEVVGEKAE 298
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-212 |
8.40e-71 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 217.86 E-value: 8.40e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLsGVVTE 81
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI-GALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKEKaRTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:cd03268 80 APGFYPNLTARENLRLLARLLGIRKK-RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 917220261 162 PDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03268 159 PDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
9-241 |
9.33e-71 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 221.11 E-value: 9.33e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 9 KSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESAGLYHQ 88
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 LSGQENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGI 165
Cdd:TIGR01188 81 LTGRENLEMMGRLYGLPKDeaeERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 166 KMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKYLKDVKVRVLTEPAMIQRDAA 241
Cdd:TIGR01188 161 RAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVS 235
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-217 |
1.11e-70 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 218.01 E-value: 1.11e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTE 81
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGaerRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 159 GLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-212 |
1.12e-65 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 205.29 E-value: 1.12e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHS----VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLS 76
Cdd:cd03266 1 MITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYL 153
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGdelTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 154 DEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-196 |
1.61e-62 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 196.55 E-value: 1.61e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVT 80
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQLSGQENLSFFADLYGVK-EKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:COG4133 82 HADGLKPELTVRENLRFWAALYGLRaDREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTA 161
|
170 180 190
....*....|....*....|....*....|....*..
gi 917220261 160 LDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPV 196
Cdd:COG4133 162 LDAAGVALLAELIAAH-LARGGAVLLTTHQPLELAAA 197
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-212 |
1.18e-56 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 181.71 E-value: 1.18e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHdpaTSGDEIRKLSGVVTE 81
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK---PLDIAARNRIGYLPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKeeaRRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 917220261 159 GLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03269 158 GLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
8-214 |
3.50e-54 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 176.05 E-value: 3.50e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDpaTSGDEIRKLsGVVTESAGLYH 87
Cdd:TIGR03740 7 SKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP--WTRKDLHKI-GSLIESPPLYE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGQENLSFFADLYGVKEkARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKM 167
Cdd:TIGR03740 84 NLTARENLKVHTTLLGLPD-SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQE 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 917220261 168 VLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTV 214
Cdd:TIGR03740 163 LRELIRSF-PEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-217 |
3.27e-53 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 173.84 E-value: 3.27e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDE---IRKLSG 77
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGlSEAElyrLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 VVTESAGLYHQLSGQENLSFFadlygVKEK---------ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKP 148
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFP-----LREHtrlseeeirEIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 149 KLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-224 |
5.94e-53 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 173.24 E-value: 5.94e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDE---IRKLS 76
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDiTGLSEKElyeLRRRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVTESAGLYHQLSGQENLSFFADLYGVKEKA----RTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:COG1127 85 GMLFQGGALFDSLTVFENVAFPLREHTDLSEAeireLVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 153 LDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL---SDKYLKD 224
Cdd:COG1127 165 YDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELlasDDPWVRQ 239
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
10-217 |
7.69e-53 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 172.30 E-value: 7.69e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 10 SFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESAGLYHQL 89
Cdd:cd03263 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 90 SGQENLSFFADLYGV---KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIK 166
Cdd:cd03263 91 TVREHLRFYARLKGLpksEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 917220261 167 MVLSYLKKYNKetGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:cd03263 171 AIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-276 |
8.29e-53 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 175.66 E-value: 8.29e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVV----TEsagLYHQLSGQ 92
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFKRRKEFARRIGVVfgqrSQ---LWWDLPAI 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVL 169
Cdd:COG4586 115 DSFRLLKAIYRIPDaeyKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 170 SYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKYLKDVKVRV-LTEPAMIQRDAASFPFDQL 248
Cdd:COG4586 195 EFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKERFGPYKTIVLeLAEPVPPLELPRGGEVIER 274
|
250 260
....*....|....*....|....*...
gi 917220261 249 KPGEAVFTLPSKEHISGLLKELLKKHSI 276
Cdd:COG4586 275 EGNRVRLEVDPRESLAEVLARLLARYPV 302
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-212 |
1.67e-52 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 171.22 E-value: 1.67e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGrIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTE 81
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGV---KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIpskEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 159 GLDPD---GIKMVLSYLKKynketGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03264 160 GLDPEeriRFRNLLSELGE-----DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
12-217 |
3.02e-52 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 171.36 E-value: 3.02e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDP-ATSGDEIRKLSGVVTESAGlyHQLs 90
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDItKKNLRELRRKVGLVFQNPD--DQL- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 gqenlsFFADLY----------GVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:COG1122 89 ------FAPTVEedvafgpenlGLPReeiRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPT 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 158 NGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:COG1122 163 AGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-214 |
6.67e-51 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 168.34 E-value: 6.67e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIrklsG--- 77
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRRI----Gyvp 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 ---------------VVteSAGLYHQlsgqenLSFFAdLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAK 142
Cdd:COG1121 82 qraevdwdfpitvrdVV--LMGRYGR------RGLFR-RPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 917220261 143 ALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLeNRTIVEQGTV 214
Cdd:COG1121 153 ALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPP 222
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
12-205 |
8.21e-51 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 166.87 E-value: 8.21e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDP-ATSGDEIRKLSGVV---TEsaglyH 87
Cdd:cd03225 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLtKLSLKELRRKVGLVfqnPD-----D 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSG---QENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:cd03225 87 QFFGptvEEEVAFGLENLGLPEeeiEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 917220261 162 PDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLEN 205
Cdd:cd03225 167 PAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLED 209
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
16-198 |
8.17e-50 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 165.20 E-value: 8.17e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDE-IRKLSGVVTESAGLYHQLSGQEN 94
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKfLRRIGVVFGQKTQLWWDLPVIDS 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 95 LSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSY 171
Cdd:cd03267 116 FYLLAAIYDLPParfKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNF 195
|
170 180
....*....|....*....|....*..
gi 917220261 172 LKKYNKETGTTIIICSHVLHQLEPVCD 198
Cdd:cd03267 196 LKEYNRERGTTVLLTSHYMKDIEALAR 222
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-212 |
6.45e-48 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 159.62 E-value: 6.45e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIrklsGVVTESA 83
Cdd:cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI----GYVPQRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 ----------------GLYHQLSGQENLSffadlygVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHK 147
Cdd:cd03235 78 sidrdfpisvrdvvlmGLYGHKGLFRRLS-------KADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQD 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 148 PKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLeNRTIVEQG 212
Cdd:cd03235 151 PDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-217 |
3.56e-47 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 158.13 E-value: 3.56e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHS----VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKL 75
Cdd:cd03258 1 MIELKNVSKVFGDTGgkvtALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDlTLLSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 S---GVVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPK 149
Cdd:cd03258 81 RrriGMIFQHFNLLSSRTVFENVALPLEIAGVPKaeiEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 150 LLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-194 |
8.60e-46 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 155.21 E-value: 8.60e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKL--- 75
Cdd:COG3638 2 MLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTAlRGRALRRLrrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 SGVVTESAGLYHQLSGQEN--------LSFFADLYGV---KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKAL 144
Cdd:COG3638 82 IGMIFQQFNLVPRLSVLTNvlagrlgrTSTWRSLLGLfppEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIARAL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 917220261 145 LHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcshVLHQLE 194
Cdd:COG3638 162 VQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVV---NLHQVD 208
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-241 |
1.43e-45 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 154.81 E-value: 1.43e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLsGVV 79
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDiTGLPPHRIARL-GIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 -----TEsagLYHQLSGQENL----------SFFADLYGVKE--------KARTAELLELFDLAEHKDKPAGTYSTGMKK 136
Cdd:COG0411 83 rtfqnPR---LFPELTVLENVlvaaharlgrGLLAALLRLPRarreereaRERAEELLERVGLADRADEPAGNLSYGQQR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 137 RLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDsfaflenRTIV-EQGtvf 215
Cdd:COG0411 160 RLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLAD-------RIVVlDFG--- 229
|
250 260
....*....|....*....|....*...
gi 917220261 216 elsdkylkdvkvRVLTE--PAMIQRDAA 241
Cdd:COG0411 230 ------------RVIAEgtPAEVRADPR 245
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-233 |
3.67e-45 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 153.66 E-value: 3.67e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVV 79
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlSRRELARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESAGLYHQLSGQE--------NLSFFADLyGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLL 151
Cdd:COG1120 81 PQEPPAPFGLTVRElvalgrypHLGLFGRP-SAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 152 YLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcshVLHQLE---PVCDSFAFLENRTIVEQGTVFE-LSDKYLKDV-- 225
Cdd:COG1120 160 LLDEPTSHLDLAHQLEVLELLRRLARERGRTVVM---VLHDLNlaaRYADRLVLLKDGRIVAQGPPEEvLTPELLEEVyg 236
|
....*....
gi 917220261 226 -KVRVLTEP 233
Cdd:COG1120 237 vEARVIEDP 245
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-217 |
3.82e-45 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 156.01 E-value: 3.82e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF----GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKL 75
Cdd:COG1135 1 MIELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTAlSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 S---GVVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKpagtY----STGMKKRLALAKALL 145
Cdd:COG1135 81 RrkiGMIFQHFNLLSSRTVAENVALPLEIAGVPKaeiRKRVAELLELVGLSDKADA----YpsqlSGGQKQRVGIARALA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 146 HKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcshVLHQLEPV---CDSFAFLENRTIVEQGTVFEL 217
Cdd:COG1135 157 NNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVL---ITHEMDVVrriCDRVAVLENGRIVEQGPVLDV 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-217 |
5.54e-45 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 159.68 E-value: 5.54e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHS-----VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRK 74
Cdd:COG1123 260 LLEVRNLSKRYPVRGkggvrAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDlTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 LSGVVtesaGL-----YHQLS-----GQEnLSFFADLYGVKEKA----RTAELLELFDL-AEHKDKPAGTYSTGMKKRLA 139
Cdd:COG1123 340 LRRRV----QMvfqdpYSSLNprmtvGDI-IAEPLRLHGLLSRAerreRVAELLERVGLpPDLADRYPHELSGGQRQRVA 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 140 LAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:COG1123 415 IARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEV 492
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
12-219 |
2.64e-44 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 150.28 E-value: 2.64e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHsVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLsGV--VTESAGLYHQ 88
Cdd:cd03224 12 KSQ-ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDiTGLPPHERARA-GIgyVPEGRRIFPE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 LSGQENLSFFA-DLYGVKEKARTAELLELF-DLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIK 166
Cdd:cd03224 90 LTVEENLLLGAyARRRAKRKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 917220261 167 MVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSD 219
Cdd:cd03224 170 EIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
4-205 |
1.23e-43 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 146.62 E-value: 1.23e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGD-EIRKLSGVVtes 82
Cdd:cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLeELRRRIGYV--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 aglyHQLSGqenlsffadlygvkekartaellelfdlaehkdkpagtystGMKKRLALAKALLHKPKLLYLDEPTNGLDP 162
Cdd:cd00267 79 ----PQLSG-----------------------------------------GQRQRVALARALLLNPDLLLLDEPTSGLDP 113
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 917220261 163 DGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLEN 205
Cdd:cd00267 114 ASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKD 155
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
4-198 |
1.47e-43 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 149.12 E-value: 1.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD----PAtsgDEIRKLsGVV 79
Cdd:cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDitglPP---HEIARL-GIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 -T-ESAGLYHQLSGQENL----------SFFADLYGVKEKA---RTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKAL 144
Cdd:cd03219 79 rTfQIPRLFPELTVLENVmvaaqartgsGLLLARARREEREareRAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 917220261 145 LHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCD 198
Cdd:cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLAD 211
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-205 |
1.90e-43 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 146.95 E-value: 1.90e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKL---SGV 78
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLrrrIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAGLYHQLSGQENLSFfadlygvkekartaeLLelfdlaehkdkpagtySTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:cd03229 81 VFQDFALFPHLTVLENIAL---------------GL----------------SGGQQQRVALARALAMDPDVLLLDEPTS 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 917220261 159 GLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLEN 205
Cdd:cd03229 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD 176
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-194 |
3.47e-43 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 148.10 E-value: 3.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGS-HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKL---S 76
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKlKGKALRQLrrqI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVTESAGLYHQLSGQEN--------LSFF---ADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALL 145
Cdd:cd03256 81 GMIFQQFNLIERLSVLENvlsgrlgrRSTWrslFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 917220261 146 HKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcshVLHQLE 194
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIV---SLHQVD 206
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
4-212 |
1.15e-42 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 144.89 E-value: 1.15e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVtes 82
Cdd:cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlSPKELARKIAYV--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 aglyhqlsgqenlsffadlygvkekartAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDP 162
Cdd:cd03214 79 ----------------------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 917220261 163 DGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03214 131 AHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-194 |
2.79e-42 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 145.20 E-value: 2.79e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEI----RK 74
Cdd:COG2884 1 MIRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlKRREIpylrRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 LsGVVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLL 151
Cdd:COG2884 81 I-GVVFQDFRLLPDRTVYENVALPLRVTGKSRkeiRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 917220261 152 YLDEPTNGLDPDGIKMVLSYLKKYNKeTGTTIIICSHVLHQLE 194
Cdd:COG2884 160 LADEPTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELVD 201
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-228 |
3.23e-42 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 145.61 E-value: 3.23e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF----------------------GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEI 58
Cdd:COG1134 4 MIEVENVSKSYrlyhepsrslkelllrrrrtrrEEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 59 SIFGhdpatsgdeirKLSGVVTESAGLYHQLSGQENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMK 135
Cdd:COG1134 84 EVNG-----------RVSALLELGAGFHPELTGRENIYLNGRLLGLSRKeidEKFDEIVEFAELGDFIDQPVKTYSSGMR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 136 KRLALAKALLHKPKLLYLDEptngldpdgikmVLS------------YLKKYnKETGTTIIICSHVLHQLEPVCDSFAFL 203
Cdd:COG1134 153 ARLAFAVATAVDPDILLVDE------------VLAvgdaafqkkclaRIREL-RESGRTVIFVSHSMGAVRRLCDRAIWL 219
|
250 260
....*....|....*....|....*
gi 917220261 204 ENRTIVEQGTVFELSDKYLKDVKVR 228
Cdd:COG1134 220 EKGRLVMDGDPEEVIAAYEALLAGR 244
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-222 |
3.54e-42 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 148.44 E-value: 3.54e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTE 81
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVkeKARTAE-----LLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEP 156
Cdd:PRK13536 122 FDNLDLEFTVRENLLVFGRYFGM--STREIEavipsLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 157 TNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKYL 222
Cdd:PRK13536 200 TTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHI 264
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-188 |
1.63e-41 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 143.01 E-value: 1.63e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGS----HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGD----EIR 73
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEkelaAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 74 KLS-GVVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPK 149
Cdd:cd03255 81 RRHiGFVFQSFNLLPDLTALENVELPLLLAGVPKkerRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 917220261 150 LLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSH 188
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
4-212 |
2.50e-41 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 142.66 E-value: 2.50e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLsGVVTESA 83
Cdd:cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNI-GMVFQDY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 GLYHQLSGQENLSFFADLYGVKEKARTA---ELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:cd03259 82 ALFPHLTVAENIAFGLKLRGVPKAEIRArvrELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 161 DPDgIKMVL-SYLKKYNKETGTTIIICSHvlHQLEP--VCDSFAFLENRTIVEQG 212
Cdd:cd03259 162 DAK-LREELrEELKELQRELGITTIYVTH--DQEEAlaLADRIAVMNEGRIVQVG 213
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-228 |
2.89e-41 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 143.30 E-value: 2.89e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSG-EISIFGHDP-ATSGDEIRKLSGV 78
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRgGEDVWELRKRIGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VteSAGLYHQLSGQEN-----LS-FFADL-----YGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHK 147
Cdd:COG1119 83 V--SPALQLRFPRDETvldvvLSgFFDSIglyrePTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 148 PKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcshVLHQLEPVCDSF---AFLENRTIVEQGTVFE------LS 218
Cdd:COG1119 161 PELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVL---VTHHVEEIPPGIthvLLLKDGRVVAAGPKEEvltsenLS 237
|
250
....*....|
gi 917220261 219 DKYLKDVKVR 228
Cdd:COG1119 238 EAFGLPVEVE 247
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-214 |
8.60e-41 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 141.55 E-value: 8.60e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIK-----PDSGEISIFGHDPATSGD---EIR 73
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIYDLDVdvlELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 74 KLSGVVTESAGLYHqLSGQENLSFFADLYGVKEK----ARTAELLELFDL-AEHKDKPAGTY-STGMKKRLALAKALLHK 147
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKeeldERVEEALRKAALwDEVKDRLHALGlSGGQQQRLCLARALANE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 148 PKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtgTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTV 214
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-217 |
1.15e-40 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 143.41 E-value: 1.15e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTE 81
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAaaaRALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 159 GLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK13537 168 GLDPQARHLMWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-216 |
5.42e-40 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 139.74 E-value: 5.42e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKL---SG 77
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDINKLrrkVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 VVTESAGLYHQLSGQENLsffadLYG-----------VKEKARtaELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLH 146
Cdd:COG1126 81 MVFQQFNLFPHLTVLENV-----TLApikvkkmskaeAEERAM--ELLERVGLADKADAYPAQLSGGQQQRVAIARALAM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 147 KPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT---VFE 216
Cdd:COG1126 154 EPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPpeeFFE 225
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-225 |
9.55e-40 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 139.36 E-value: 9.55e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGS-HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKL--- 75
Cdd:TIGR02315 1 MLEVENLSKVYPNgKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDiTKLRGKKLRKLrrr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 SGVVTESAGLYHQLSGQENL--------SFFADLYGV---KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKAL 144
Cdd:TIGR02315 81 IGMIFQHYNLIERLTVLENVlhgrlgykPTWRSLLGRfseEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 145 LHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICshvLHQLEPV---CDSFAFLENRTIVEQGTVFELSDKY 221
Cdd:TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN---LHQVDLAkkyADRIVGLKAGEIVFDGAPSELDDEV 237
|
....
gi 917220261 222 LKDV 225
Cdd:TIGR02315 238 LRHI 241
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-158 |
2.72e-39 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 135.08 E-value: 2.72e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVVTESAGLYHQLSGQENL 95
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDlTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 96 SFFADLYGVKE---KARTAELLELFDLAEHKDKPAG----TYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:pfam00005 81 RLGLLLKGLSKrekDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-208 |
6.08e-39 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 143.28 E-value: 6.08e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISI-------------FGHDPATSGD 70
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIpkglrigylpqepPLDDDLTVLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 71 EI----RKLSGVVTESAGLYHQLS-GQENLSFFADLYGVKE-------KARTAELLE-L-FDLAEHkDKPAGTYSTGMKK 136
Cdd:COG0488 81 TVldgdAELRALEAELEELEAKLAePDEDLERLAELQEEFEalggweaEARAEEILSgLgFPEEDL-DRPVSELSGGWRR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 917220261 137 RLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNketGTTIIIcSHVLHQLEPVCDSFAFLENRTI 208
Cdd:COG0488 160 RVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFLKNYP---GTVLVV-SHDRYFLDRVATRILELDRGKL 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-265 |
8.52e-39 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 142.46 E-value: 8.52e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHdpatsgdEIRKLSGVVTESA 83
Cdd:COG1129 7 MRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGE-------PVRFRSPRDAQAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 GLY--HQ-------LSGQENLsFFADL---YGV----KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHK 147
Cdd:COG1129 80 GIAiiHQelnlvpnLSVAENI-FLGREprrGGLidwrAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 148 PKLLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKYLkdvkV 227
Cdd:COG1129 159 ARVLILDEPTASLTEREVERLFRIIRRL-KAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDEL----V 233
|
250 260 270
....*....|....*....|....*....|....*....
gi 917220261 228 RvltepAMIQRD-AASFPFDQLKPGEAVFTLpskEHISG 265
Cdd:COG1129 234 R-----LMVGRElEDLFPKRAAAPGEVVLEV---EGLSV 264
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1-212 |
3.07e-38 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 134.97 E-value: 3.07e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGhdpatsgdeirKLSGVVT 80
Cdd:cd03220 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-----------RVSSLLG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQLSGQENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:cd03220 91 LGGGFNPELTGRENIYLNGRLLGLSRKeidEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVL 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 158 NGLDPdgikmvlSYLKKYNK------ETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03220 171 AVGDA-------AFQEKCQRrlrellKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-219 |
6.19e-38 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 134.34 E-value: 6.19e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD----PAtsgDEIRKLs 76
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDitglPP---HRIARL- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GV--VTESAGLYHQLSGQENL--SFFADLYGVKEKARTAELLELF-DLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLL 151
Cdd:COG0410 79 GIgyVPEGRRIFPSLTVEENLllGAYARRDRAEVRADLERVYELFpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 152 YLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSD 219
Cdd:COG0410 159 LLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLA 225
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
14-229 |
7.22e-38 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 135.27 E-value: 7.22e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGD----EIRKLSGVV---TEsagly 86
Cdd:TIGR04521 18 KKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKkklkDLRKKVGLVfqfPE----- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 87 HQL---SGQENLSFFADLYGVKE---KARTAELLELFDLAEH-KDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:TIGR04521 93 HQLfeeTVYKDIAFGPKNLGLSEeeaEERVKEALELVGLDEEyLERSPFELSGGQMRRVAIAGVLAMEPEVLILDEPTAG 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 917220261 160 LDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL--SDKYLKDVKVRV 229
Cdd:TIGR04521 173 LDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVfsDVDELEKIGLDV 244
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-188 |
8.53e-38 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 133.42 E-value: 8.53e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH---DPATSGDEIRKLSGV 78
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLkltDDKKNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAGLYHQLSGQENLSfFADLY--GVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYL 153
Cdd:cd03262 81 VFQQFNLFPHLTVLENIT-LAPIKvkGMSKAeaeERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159
|
170 180 190
....*....|....*....|....*....|....*
gi 917220261 154 DEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSH 188
Cdd:cd03262 160 DEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTH 193
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-209 |
7.85e-37 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 131.05 E-value: 7.85e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGS----HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIrklsG 77
Cdd:cd03293 1 LEVRNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDR----G 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 VVTESAGLYHQLSGQENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAearERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 155 EPTNGLDPdGIKMVL-SYLKKYNKETGTTIIICSHVLHqlEPVcdsfaFLENRTIV 209
Cdd:cd03293 157 EPFSALDA-LTREQLqEELLDIWRETGKTVLLVTHDID--EAV-----FLADRVVV 204
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-209 |
1.88e-36 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 128.32 E-value: 1.88e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSGDEIRKLSGVVte 81
Cdd:cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKevSFASPRDARRAGIAMV-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 saglyHQLSGqenlsffadlygvkekartaellelfdlaehkdkpagtystGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:cd03216 81 -----YQLSV-----------------------------------------GERQMVEIARALARNARLLILDEPTAALT 114
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 917220261 162 PDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIV 209
Cdd:cd03216 115 PAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-213 |
2.08e-36 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 130.52 E-value: 2.08e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH----DPATSGDEIRKLS- 76
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfdfSKTPSDKAIRELRr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 --GVVTESAGLYHQLSGQENL----SFFADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKL 150
Cdd:PRK11124 83 nvGMVFQQYNLWPHLTVQQNLieapCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 151 LYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT 213
Cdd:PRK11124 163 LLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-217 |
3.69e-36 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 132.91 E-value: 3.69e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD----PAtsgdEIRKLs 76
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDvtglPP----EKRNV- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYL 153
Cdd:COG3842 80 GMVFQDYALFPHLTVAENVAFGLRMRGVPKaeiRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 154 DEPTNGLDPDGIKMVLSYLKKYNKETGTTIIicsHVLH-QLE--PVCDSFAFLENRTIVEQGTVFEL 217
Cdd:COG3842 160 DEPLSALDAKLREEMREELRRLQRELGITFI---YVTHdQEEalALADRIAVMNDGRIEQVGTPEEI 223
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-188 |
6.14e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 129.82 E-value: 6.14e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF----GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIrkls 76
Cdd:COG1116 7 ALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDR---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYL 153
Cdd:COG1116 83 GVVFQEPALLPWLTVLDNVALGLELRGVPKaerRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLM 162
|
170 180 190
....*....|....*....|....*....|....*.
gi 917220261 154 DEPTNGLDPdGIKMVL-SYLKKYNKETGTTIIICSH 188
Cdd:COG1116 163 DEPFGALDA-LTRERLqDELLRLWQETGKTVLFVTH 197
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-212 |
6.27e-36 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 128.78 E-value: 6.27e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF----GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLS 76
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 G----------------------VVTESAGLYHQLSGQEnlsffadlygvKEKARTAELLELFDLAE-HKDKPAGTYSTG 133
Cdd:cd03257 81 RkeiqmvfqdpmsslnprmtigeQIAEPLRIHGKLSKKE-----------ARKEAVLLLLVGVGLPEeVLNRYPHELSGG 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 134 MKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
16-188 |
8.66e-36 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 127.54 E-value: 8.66e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGD---EIRKLSGVVTESAGlyHQL--- 89
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKgllERRQRVGLVFQDPD--DQLfaa 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 90 SGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIK 166
Cdd:TIGR01166 85 DVDQDVAFGPLNLGLSEaevERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164
|
170 180
....*....|....*....|..
gi 917220261 167 MVLSYLKKYNKEtGTTIIICSH 188
Cdd:TIGR01166 165 QMLAILRRLRAE-GMTVVISTH 185
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-217 |
9.78e-36 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 134.65 E-value: 9.78e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF--GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPD---SGEISIFGHDPATSGDEIR-K 74
Cdd:COG1123 4 LLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRgR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 LSGVVTESAGlyHQLSGQ---ENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKP 148
Cdd:COG1123 84 RIGMVFQDPM--TQLNPVtvgDQIAEALENLGLSRaeaRARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 149 KLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:COG1123 162 DLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI 230
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
15-209 |
2.04e-35 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 126.99 E-value: 2.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 15 SVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfgHDPATSGDEIRKLSGVVteSAGLYHQL---SG 91
Cdd:cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL--NGKPIKAKERRKSIGYV--MQDVDYQLftdSV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENLSFFADLYGvKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSY 171
Cdd:cd03226 90 REELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
|
170 180 190
....*....|....*....|....*....|....*...
gi 917220261 172 LKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIV 209
Cdd:cd03226 169 IRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-216 |
2.63e-35 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 130.31 E-value: 2.63e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF----GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKL 75
Cdd:PRK11153 1 MIELKNISKVFpqggRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDlTALSEKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 SgvvtESAGLYHQ----LSGQ---ENLSFFADLYGVKE---KARTAELLELFDLAEHKDK-PAgTYSTGMKKRLALAKAL 144
Cdd:PRK11153 81 R----RQIGMIFQhfnlLSSRtvfDNVALPLELAGTPKaeiKARVTELLELVGLSDKADRyPA-QLSGGQKQRVAIARAL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 917220261 145 LHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFE 216
Cdd:PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-213 |
5.55e-35 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 126.67 E-value: 5.55e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-------PATSGDEIRK 74
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdfsqkpSEKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 LSGVVTESAGLYHQLSGQENLS----FFADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKL 150
Cdd:COG4161 83 KVGMVFQQYNLWPHLTVMENLIeapcKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 151 LYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT 213
Cdd:COG4161 163 LLFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD 224
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-219 |
5.61e-35 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 126.75 E-value: 5.61e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFG---HDPATSGDEIRKLSG 77
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlkvNDPKVDERLIRQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 VVTESAGLYHQLSGQENLSFfadlyG-------VKEKART--AELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKP 148
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMF-----GplrvrgaSKEEAEKqaRELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 149 KLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSD 219
Cdd:PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-207 |
1.58e-34 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 122.56 E-value: 1.58e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsifghdpaTSGDEIRklsgvvte 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV--------TWGSTVK-------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 sAGLYHQLSGqenlsffadlygvkekartaellelfdlaehkdkpagtystGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:cd03221 65 -IGYFEQLSG-----------------------------------------GEKMRLALAKLLLENPNLLLLDEPTNHLD 102
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 917220261 162 PDGIKMVLSYLKKYNKetgtTIIICSHVLHQLEPVCDSFAFLENRT 207
Cdd:cd03221 103 LESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
6-162 |
2.36e-34 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 132.56 E-value: 2.36e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 6 GASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHdPATSGD-EIRKLSGVVTESAG 84
Cdd:NF033858 271 GLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQ-PVDAGDiATRRRVGYMSQAFS 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 85 LYHQLSGQENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:NF033858 350 LYGELTVRQNLELHARLFHLPAAeiaARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVD 429
|
.
gi 917220261 162 P 162
Cdd:NF033858 430 P 430
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-188 |
2.61e-34 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 124.66 E-value: 2.61e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsIFGHDPATSGDEIRKLSGVVTE 81
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI-LLDGKDITNLPPHKRPVNTVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKaeiKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159
|
170 180 190
....*....|....*....|....*....|
gi 917220261 159 GLDPDGIKMVLSYLKKYNKETGTTIIICSH 188
Cdd:cd03300 160 ALDLKLRKDMQLELKRLQKELGITFVFVTH 189
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-210 |
2.75e-34 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 130.57 E-value: 2.75e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfGHdpatsgdeirklsGVVT 80
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GE-------------TVKI 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 esaGLYHQLSGQ--ENLSFFADLYGVKEKARTAE---LLELFDLA-EHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:COG0488 381 ---GYFDQHQEEldPDKTVLDELRDGAPGGTEQEvrgYLGRFLFSgDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLD 457
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYNketGTTIIIcSHVLHQLEPVCDSFAFLENRTIVE 210
Cdd:COG0488 458 EPTNHLDIETLEALEEALDDFP---GTVLLV-SHDRYFLDRVATRILEFEDGGVRE 509
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
12-217 |
4.20e-34 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 130.66 E-value: 4.20e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLYHQlS 90
Cdd:COG4987 346 AGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDlDEDDLRRRIAVVPQRPHLFDT-T 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 GQENLSFF------ADLYGVKEKARTAELLElfdlaehkDKPAG----------TYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:COG4987 425 LRENLRLArpdatdEELWAALERVGLGDWLA--------ALPDGldtwlgeggrRLSGGERRRLALARALLRDAPILLLD 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYNKetGTTIIICSHVLHQLEpVCDSFAFLENRTIVEQGTVFEL 217
Cdd:COG4987 497 EPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGTHEEL 556
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
4-216 |
1.66e-33 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 122.77 E-value: 1.66e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVV--TE 81
Cdd:TIGR04406 4 AENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGylPQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQEN----LSFFADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:TIGR04406 84 EASIFRKLTVEENimavLEIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPF 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 158 NGLDPDGIKMVlSYLKKYNKETGTTIIICSHVLHQLEPVCDSfAFlenrtIVEQGTVFE 216
Cdd:TIGR04406 164 AGVDPIAVGDI-KKIIKHLKERGIGVLITDHNVRETLDICDR-AY-----IISDGKVLA 215
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
8-213 |
3.10e-33 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 122.41 E-value: 3.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVVTESAGL 85
Cdd:cd03295 7 TKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDiREQDPVELRRKIGYVIQQIGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 86 YHQLSGQENLSFFADLYGVKE---KARTAELLELFDL--AEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:cd03295 87 FPHMTVEENIALVPKLLKWPKekiRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 917220261 161 DPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT 213
Cdd:cd03295 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-213 |
5.53e-33 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 128.03 E-value: 5.53e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHS--VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGV 78
Cdd:COG2274 474 IELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPASLRRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAGLYhqlSG--QENLSFF---ADLYGVKEKARTAELLElfDLAEHkdkPAG----------TYSTGMKKRLALAKA 143
Cdd:COG2274 554 VLQDVFLF---SGtiRENITLGdpdATDEEIIEAARLAGLHD--FIEAL---PMGydtvvgeggsNLSGGQRQRLAIARA 625
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 144 LLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKetGTTIIICSHVLHQLEpVCDSFAFLENRTIVEQGT 213
Cdd:COG2274 626 LLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIR-LADRIIVLDKGRIVEDGT 692
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
12-217 |
1.50e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 121.49 E-value: 1.50e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSvLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsIFGHDP----ATSGDEIRKLSGVVTESAGlyH 87
Cdd:PRK13636 18 GTHA-LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPidysRKGLMKLRESVGMVFQDPD--N 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QL---SGQENLSFFADLYGVKEKA---RTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:PRK13636 94 QLfsaSVYQDVSFGAVNLKLPEDEvrkRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 162 PDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK13636 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
4-198 |
1.82e-32 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 119.96 E-value: 1.82e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGV--VTE 81
Cdd:cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIgyLPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKEKARTA---ELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:cd03218 83 EASIFRKLTVEENILAVLEIRGLSKKEREEkleELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 917220261 159 GLDPDGIKMVlSYLKKYNKETGTTIIICSHVLHQLEPVCD 198
Cdd:cd03218 163 GVDPIAVQDI-QKIIKILKDRGIGVLITDHNVRETLSITD 201
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
12-237 |
3.83e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 120.29 E-value: 3.83e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGhDPATSGD--EIRKLSGVVTESAGlyHQL 89
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG-EPITKENirEVRKFVGLVFQNPD--DQI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 90 ---SGQENLSFFADLYGVKEKA---RTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPD 163
Cdd:PRK13652 92 fspTVEQDIAFGPINLGLDEETvahRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 164 GIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFE--LSDKYLKDVKVRVLTEPAMIQ 237
Cdd:PRK13652 172 GVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEifLQPDLLARVHLDLPSLPKLIR 247
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-176 |
6.74e-32 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 118.59 E-value: 6.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDpatsgdeIRKLS---- 76
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGED-------ITHLPmhkr 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 -----GVVTESAGLYHQLSGQENLSFFADLYGVKEKARTA---ELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKP 148
Cdd:COG1137 76 arlgiGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREErleELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNP 155
|
170 180 190
....*....|....*....|....*....|..
gi 917220261 149 KLLYLDEPTNGLDP----DgIKMVLSYLKKYN 176
Cdd:COG1137 156 KFILLDEPFAGVDPiavaD-IQKIIRHLKERG 186
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
12-205 |
1.48e-31 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 115.56 E-value: 1.48e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLYHQlS 90
Cdd:cd03228 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNIAYVPQDPFLFSG-T 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 GQENLsffadlygvkekartaellelfdlaehkdkpagtYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLS 170
Cdd:cd03228 92 IRENI----------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
|
170 180 190
....*....|....*....|....*....|....*
gi 917220261 171 YLKKYNKETgTTIIIcSHVLHQLEpVCDSFAFLEN 205
Cdd:cd03228 138 ALRALAKGK-TVIVI-AHRLSTIR-DADRIIVLDD 169
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-220 |
1.55e-31 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 117.83 E-value: 1.55e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDpATSGDEIRKLSGVVTE 81
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGED-ATDVPVQERNVGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFfadlyGVKEK------------ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPK 149
Cdd:cd03296 82 HYALFRHMTVFDNVAF-----GLRVKprserppeaeirAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 150 LLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDK 220
Cdd:cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-234 |
7.61e-31 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 116.41 E-value: 7.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPA-TSGDEIRKLSGVv 79
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdWSPAELARRRAV- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 tesaglyhqLSGQENLSF-F----------ADLYGVKEKAR--TAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALL- 145
Cdd:PRK13548 81 ---------LPQHSSLSFpFtveevvamgrAPHGLSRAEDDalVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAq 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 146 -----HKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcshVLHQLEPV---CDSFAFLENRTIVEQGTVFE- 216
Cdd:PRK13548 152 lwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV---VLHDLNLAaryADRIVLLHQGRLVADGTPAEv 228
|
250 260
....*....|....*....|.
gi 917220261 217 LSDKYLKDV---KVRVLTEPA 234
Cdd:PRK13548 229 LTPETLRRVygaDVLVQPHPE 249
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
16-188 |
8.95e-31 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 114.38 E-value: 8.95e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESAGLYHQLSGQENL 95
Cdd:TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPELSALENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 96 SFFADLYGvKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKY 175
Cdd:TIGR01189 95 HFWAAIHG-GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLLRAH 173
|
170
....*....|...
gi 917220261 176 nKETGTTIIICSH 188
Cdd:TIGR01189 174 -LARGGIVLLTTH 185
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-216 |
1.06e-30 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 117.94 E-value: 1.06e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDpATSGDEIRKLS-GVVT 80
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRD-LFTNLPPRERRvGFVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKD-KPAgTYSTGMKKRLALAKALLHKPKLLYLDEP 156
Cdd:COG1118 82 QHYALFPHMTVAENIAFGLRVRPPSKaeiRARVEELLELVQLEGLADrYPS-QLSGGQRQRVALARALAVEPEVLLLDEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917220261 157 TNGLDpdgikmvlSYLKK--------YNKETGTTIIIcshVLHQLE---PVCDSFAFLENRTIVEQGT---VFE 216
Cdd:COG1118 161 FGALD--------AKVRKelrrwlrrLHDELGGTTVF---VTHDQEealELADRVVVMNQGRIEQVGTpdeVYD 223
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-198 |
1.31e-30 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 120.13 E-value: 1.31e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTgasKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSGDEIRklSGV 78
Cdd:COG3845 8 LRGIT---KRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvRIRSPRDAIA--LGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 vtesaGLYHQ-------LSGQENL--------SFFADLygVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKA 143
Cdd:COG3845 83 -----GMVHQhfmlvpnLTVAENIvlgleptkGGRLDR--KAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKA 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 144 LLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCD 198
Cdd:COG3845 156 LYRGARILILDEPTAVLTPQEADELFEILRRL-AAEGKSIIFITHKLREVMAIAD 209
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
16-220 |
1.49e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 120.63 E-value: 1.49e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLYHQlSGQEN 94
Cdd:COG4988 352 ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDlDPASWRRQIAWVPQNPYLFAG-TIREN 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 95 LSFF---ADLYGVKEKARTAELLELFDlaehkDKPAGtYST-----------GMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:COG4988 431 LRLGrpdASDEELEAALEAAGLDEFVA-----ALPDG-LDTplgeggrglsgGQAQRLALARALLRDAPLLLLDEPTAHL 504
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 161 DPDGIKMVLSYLKKYNKetGTTIIICSHVLHQLEpVCDSFAFLENRTIVEQGTVFELSDK 220
Cdd:COG4988 505 DAETEAEILQALRRLAK--GRTVILITHRLALLA-QADRILVLDDGRIVEQGTHEELLAK 561
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
9-234 |
1.83e-30 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 115.82 E-value: 1.83e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 9 KSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLS----GVVTESA 83
Cdd:cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAmSRKELRELRrkkiSMVFQSF 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 GLYHQLSGQENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:cd03294 112 ALLPHRTVLENVAFGLEVQGVPRAereERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917220261 161 DPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELsdkylkdvkvrvLTEPA 234
Cdd:cd03294 192 DPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI------------LTNPA 253
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
2-212 |
2.31e-30 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 113.41 E-value: 2.31e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSH-SVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKP--DSGEISIFGHDpaTSGDEIRKLSGV 78
Cdd:cd03213 9 LTVTVKSSPSKSGkQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlgVSGEVLINGRP--LDKRSFRKIIGY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAGLYHQLSGQENLSFFADLYGVkekartaellelfdlaehkdkpagtySTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:cd03213 87 VPQDDILHPTLTVRETLMFAAKLRGL--------------------------SGGERKRVSIALELVSNPSLLFLDEPTS 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 159 GLDPDGIKMVLSYLKKYNKeTGTTIIIcshVLHQ----LEPVCDSFAFLENRTIVEQG 212
Cdd:cd03213 141 GLDSSSALQVMSLLRRLAD-TGRTIIC---SIHQpsseIFELFDKLLLLSQGRVIYFG 194
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
16-188 |
2.33e-30 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 113.82 E-value: 2.33e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAtsgdeirkLSGVVTESAGLYHQ------L 89
Cdd:PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID--------DPDVAEACHYLGHRnamkpaL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 90 SGQENLSFFADLYGVKEkARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVL 169
Cdd:PRK13539 89 TVAENLEFWAAFLGGEE-LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167
|
170
....*....|....*....
gi 917220261 170 SyLKKYNKETGTTIIICSH 188
Cdd:PRK13539 168 E-LIRAHLAQGGIVIAATH 185
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-188 |
5.16e-30 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 113.12 E-value: 5.16e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLsGVVTE 81
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI-AMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKdeiDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159
|
170 180 190
....*....|....*....|....*....|
gi 917220261 159 GLDPDGIKMVLSYLKKYNKETGTTIIICSH 188
Cdd:cd03301 160 NLDAKLRVQMRAELKRLQQRLGTTTIYVTH 189
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
15-217 |
5.63e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 114.40 E-value: 5.63e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 15 SVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD---PATSGDEIRKLSGVVTESAGlyHQL-- 89
Cdd:PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPikyDKKSLLEVRKTVGIVFQNPD--DQLfa 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 90 -SGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGI 165
Cdd:PRK13639 94 pTVEEDVAFGPLNLGLSKeevEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 917220261 166 KMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK13639 174 SQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1-188 |
1.79e-29 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 111.73 E-value: 1.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTgasKSFGSHSV-LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDE----IRKL 75
Cdd:cd03292 3 FINVT---KTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRaipyLRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 SGVVTESAGLYHQLSGQENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPReirKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159
|
170 180 190
....*....|....*....|....*....|....*.
gi 917220261 153 LDEPTNGLDPDGIKMVLSYLKKYNKeTGTTIIICSH 188
Cdd:cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATH 194
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-234 |
2.77e-29 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 115.32 E-value: 2.77e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVV 79
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDvEALSARAASRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESAGLYHQLSGQE--------NLSFFAdlyGVKEKARTA--ELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPK 149
Cdd:PRK09536 83 PQDTSLSFEFDVRQvvemgrtpHRSRFD---TWTETDRAAveRAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 150 LLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG------TVFELSDKYlk 223
Cdd:PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRL-VDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGppadvlTADTLRAAF-- 236
|
250
....*....|.
gi 917220261 224 DVKVRVLTEPA 234
Cdd:PRK09536 237 DARTAVGTDPA 247
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
8-212 |
3.90e-29 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 110.85 E-value: 3.90e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSFGSHSVlnDVNFKAEEGRIiGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEI------RKLsGVVTE 81
Cdd:cd03297 7 EKRLPDFTL--KIDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKInlppqqRKI-GLVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE-KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:cd03297 83 QYALFPHLNVRENLAFGLKRKRNREdRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 917220261 161 DPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
3-161 |
3.97e-29 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 114.05 E-value: 3.97e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 3 NVTgasKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSgVVTES 82
Cdd:PRK11432 11 NIT---KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC-MVFQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 AGLYHQLSGQENLSFFADLYGV-KE--KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PRK11432 87 YALFPHMSLGENVGYGLKMLGVpKEerKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166
|
..
gi 917220261 160 LD 161
Cdd:PRK11432 167 LD 168
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
10-213 |
5.19e-29 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 116.42 E-value: 5.19e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 10 SF---GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGL 85
Cdd:COG1132 346 SFsypGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIGVVPQDTFL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 86 YHqLSGQENLSFF---ADLYGVKEKARTAELLELFDlaehkDKPAG--TY--------STGMKKRLALAKALLHKPKLLY 152
Cdd:COG1132 426 FS-GTIRENIRYGrpdATDEEVEEAAKAAQAHEFIE-----ALPDGydTVvgergvnlSGGQRQRIAIARALLKDPPILI 499
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 153 LDEPTNGLDPDGIKMVLSYLKKYNKETgTTIIIcSHVLHQLEpVCDSFAFLENRTIVEQGT 213
Cdd:COG1132 500 LDEATSALDTETEALIQEALERLMKGR-TTIVI-AHRLSTIR-NADRILVLDDGRIVEQGT 557
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-162 |
5.31e-29 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 116.76 E-value: 5.31e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSgdeiRKLSGVVTESA 83
Cdd:NF033858 4 LEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADA----RHRRAVCPRIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 ------G--LYHQLSGQENLSFFADLYG--VKE-KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:NF033858 80 ympqglGknLYPTLSVFENLDFFGRLFGqdAAErRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLI 159
|
170
....*....|
gi 917220261 153 LDEPTNGLDP 162
Cdd:NF033858 160 LDEPTTGVDP 169
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1-217 |
5.61e-29 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 111.82 E-value: 5.61e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHS---------VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDE 71
Cdd:TIGR02769 2 LLEVRDVTHTYRTGGlfgakqrapVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 72 IRK-----LSGVVTESAGLYHQLSG-----QENLSFFADLYGVKEKARTAELLELFDL-AEHKDKPAGTYSTGMKKRLAL 140
Cdd:TIGR02769 82 QRRafrrdVQLVFQDSPSAVNPRMTvrqiiGEPLRHLTSLDESEQKARIAELLDMVGLrSEDADKLPRQLSGGQLQRINI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 141 AKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
16-216 |
1.51e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 109.73 E-value: 1.51e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSgVVTESAGLYHQLSGQENL 95
Cdd:cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS-YVPQNYALFPHMTVYKNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 96 SffadlYGVKEK--------ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKM 167
Cdd:cd03299 93 A-----YGLKKRkvdkkeieRKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 917220261 168 VLSYLKKYNKETGTTIIicsHVLHQLEPV---CDSFAFLENRTIVEQGTVFE 216
Cdd:cd03299 168 LREELKKIRKEFGVTVL---HVTHDFEEAwalADKVAIMLNGKLIQVGKPEE 216
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
17-216 |
2.90e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 110.14 E-value: 2.90e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG---DEIRKLSGVVTEsaglY--HQL-- 89
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKvklSDIRKKVGLVFQ----YpeYQLfe 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 90 --------SGQENLSFFADlyGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:PRK13637 99 etiekdiaFGPINLGLSEE--EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 162 PDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFE 216
Cdd:PRK13637 177 PKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
16-224 |
3.09e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 110.56 E-value: 3.09e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG-------------------------D 70
Cdd:PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKktkekekvleklviqktrfkkikkiK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 71 EIRKLSGVVTESAglYHQLSGQ---ENLSFFADLYGV-KEKA--RTAELLELFDLAE-HKDKPAGTYSTGMKKRLALAKA 143
Cdd:PRK13651 102 EIRRRVGVVFQFA--EYQLFEQtieKDIIFGPVSMGVsKEEAkkRAAKYIELVGLDEsYLQRSPFELSGGQKRRVALAGI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 144 LLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVL-HQLEPVCDSFAFLENRTIVEQGTVFELSD-KY 221
Cdd:PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLdNVLEWTKRTIFFKDGKIIKDGDTYDILSDnKF 258
|
...
gi 917220261 222 LKD 224
Cdd:PRK13651 259 LIE 261
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-234 |
3.29e-28 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 109.43 E-value: 3.29e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVV 79
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAwSPWELARRRAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESA--------------GLY-HQLSGQENlsffadlygvkeKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKAL 144
Cdd:COG4559 81 PQHSslafpftveevvalGRApHGSSAAQD------------RQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 145 L-------HKPKLLYLDEPTNGLDpdgIK---MVLSYLKKYNKETGTtiIICshVLHQLE---PVCDSFAFLENRTIVEQ 211
Cdd:COG4559 149 AqlwepvdGGPRWLFLDEPTSALD---LAhqhAVLRLARQLARRGGG--VVA--VLHDLNlaaQYADRILLLHQGRLVAQ 221
|
250 260
....*....|....*....|....*..
gi 917220261 212 GTVFE-LSDKYLKDV---KVRVLTEPA 234
Cdd:COG4559 222 GTPEEvLTDELLERVygaDLRVLAHPE 248
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
12-195 |
1.67e-27 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 106.04 E-value: 1.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESAGLYHQLSG 91
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENLSFFADLYGvkeKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSY 171
Cdd:cd03231 91 LENLRFWHADHS---DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
|
170 180
....*....|....*....|....
gi 917220261 172 LKKYnKETGTTIIICSHVLHQLEP 195
Cdd:cd03231 168 MAGH-CARGGMVVLTTHQDLGLSE 190
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-188 |
2.10e-27 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 109.01 E-value: 2.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-----PATsgdeiRKL 75
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDvtdlpPKD-----RNI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 sGVVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:COG3839 78 -AMVFQSYALYPHMTVYENIAFPLKLRKVPKaeiDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFL 156
|
170 180 190
....*....|....*....|....*....|....*..
gi 917220261 153 LDEPTNGLDPDgIKMVL-SYLKKYNKETGTTIIICSH 188
Cdd:COG3839 157 LDEPLSNLDAK-LRVEMrAEIKRLHRRLGTTTIYVTH 192
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
16-184 |
2.70e-27 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 105.70 E-value: 2.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHdPATSGDEIRKLSgVVTESAGLYHQLSGQENL 95
Cdd:PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK-TATRGDRSRFMA-YLGHLPGLKADLSTLENL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 96 SFFADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKY 175
Cdd:PRK13543 104 HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183
|
....*....
gi 917220261 176 NKETGTTII 184
Cdd:PRK13543 184 LRGGGAALV 192
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
8-225 |
7.79e-27 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 105.36 E-value: 7.79e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGV--VTESAGL 85
Cdd:PRK10895 10 AKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIgyLPQEASI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 86 YHQLSGQEN----LSFFADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:PRK10895 90 FRRLSVYDNlmavLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 162 PDG---IKMVLSYLKKYnketGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFE-LSDKYLKDV 225
Cdd:PRK10895 170 PISvidIKRIIEHLRDS----GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEiLQDEHVKRV 233
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
12-190 |
1.06e-26 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 109.37 E-value: 1.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLYHQlS 90
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSlDQDEVRRRVSVCAQDAHLFDT-T 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 GQENLSFF------ADLYGVKEKARTAELLElfDLAEHKDKPAG----TYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:TIGR02868 425 VRENLRLArpdatdEELWAALERVGLADWLR--ALPDGLDTVLGeggaRLSGGERQRLALARALLADAPILLLDEPTEHL 502
|
170 180 190
....*....|....*....|....*....|
gi 917220261 161 DPDGIKMVLSYLKKynKETGTTIIICSHVL 190
Cdd:TIGR02868 503 DAETADELLEDLLA--ALSGRTVVLITHHL 530
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
27-228 |
3.49e-26 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 108.95 E-value: 3.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 27 GRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESAGLYHQLSGQENLSFFADLYGV-- 104
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVpa 2044
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 105 KEKARTAEL-LELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTI 183
Cdd:TIGR01257 2045 EEIEKVANWsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAV 2123
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 917220261 184 IICSHVLHQLEPVCDSFAFLENRTIVEQGTV----FELSDKYLKDVKVR 228
Cdd:TIGR01257 2124 VLTSHSMEECEALCTRLAIMVKGAFQCLGTIqhlkSKFGDGYIVTMKIK 2172
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
19-188 |
4.26e-26 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 102.19 E-value: 4.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 19 DVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRK-------LSGVVTEsaglyhqLSG 91
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQdllylghQPGIKTE-------LTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENLSFFADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSY 171
Cdd:PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
|
170
....*....|....*..
gi 917220261 172 LKKyNKETGTTIIICSH 188
Cdd:PRK13538 172 LAQ-HAEQGGMVILTTH 187
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
17-215 |
4.42e-26 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 108.56 E-value: 4.42e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESAGLYHQLSGQENLS 96
Cdd:TIGR01257 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHIL 1025
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 97 FFADLYGVKEKARTAE---LLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLK 173
Cdd:TIGR01257 1026 FYAQLKGRSWEEAQLEmeaMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 917220261 174 KYnkETGTTIIICSHVLHQLEPVCDSFAflenrtIVEQGTVF 215
Cdd:TIGR01257 1106 KY--RSGRTIIMSTHHMDEADLLGDRIA------IISQGRLY 1139
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
13-188 |
4.99e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 104.01 E-value: 4.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 13 SHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGD--EIRKLSGVVTESAGlyHQLS 90
Cdd:PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENlwDIRNKAGMVFQNPD--NQIV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 G---QENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDG 164
Cdd:PRK13633 100 AtivEEDVAFGPENLGIPPEeirERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG 179
|
170 180
....*....|....*....|....
gi 917220261 165 IKMVLSYLKKYNKETGTTIIICSH 188
Cdd:PRK13633 180 RREVVNTIKELNKKYGITIILITH 203
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-226 |
9.89e-26 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.43 E-value: 9.89e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGV--IKPDSGEI---------SIFGHDPATSGD 70
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIiyhvalcekCGYVERPSKVGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 71 EIRKLSGVVTESAGLYHQLSGQENLSF-----------FAdLYGVK-----------------EKA--RTAELLELFDLA 120
Cdd:TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIrkriaimlqrtFA-LYGDDtvldnvlealeeigyegKEAvgRAVDLIEMVQLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 121 EHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSF 200
Cdd:TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
|
250 260
....*....|....*....|....*.
gi 917220261 201 AFLENRTIVEQGTVFELSDKYLKDVK 226
Cdd:TIGR03269 240 IWLENGEIKEEGTPDEVVAVFMEGVS 265
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-217 |
1.25e-25 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 102.14 E-value: 1.25e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDS-----GEISIFGHDP-ATSGDEIRK 74
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAgtirvGDITIDTARSlSQQKGLIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 LS---GVVTESAGLYHQLSGQENLsffadLYG---VKEKARTA------ELLELFDLAEHKDKPAGTYSTGMKKRLALAK 142
Cdd:PRK11264 83 LRqhvGFVFQNFNLFPHRTVLENI-----IEGpviVKGEPKEEatararELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 143 ALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIV-THEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-215 |
1.35e-25 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 102.40 E-value: 1.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDS---GEISIFGHDPATSGD---EIRK 74
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKsagSHIELLGRTVQREGRlarDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 L---SGVVTESAGLYHQLSGQEN---------------LSFFADLygvkEKARTAELLELFDLAEHKDKPAGTYSTGMKK 136
Cdd:PRK09984 84 SranTGYIFQQFNLVNRLSVLENvligalgstpfwrtcFSWFTRE----QKQRALQALTRVGMVHFAHQRVSTLSGGQQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 137 RLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcshVLHQLEPvcdSFAFLENRTIVEQGTVF 215
Cdd:PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV---TLHQVDY---ALRYCERIVALRQGHVF 232
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-213 |
1.55e-25 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 101.88 E-value: 1.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPA--TSGDEIRKLSGV 78
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITdwQTAKIMREAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAGLYHQLSGQENLS---FFADLYGVKEkaRTAELLELFD-LAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAmggFFAERDQFQE--RIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT 213
Cdd:PRK11614 163 EPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-222 |
2.31e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 101.53 E-value: 2.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIK--PD---SGEISIFGHDP-ATSGDEIRKL 75
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEarvSGEVYLDGQDIfKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 SGVVTESAGLYHQLSGQENLSFFADLYG-VKEKA----RTAELLE---LFDLAEHK-DKPAGTYSTGMKKRLALAKALLH 146
Cdd:PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRlVKSKKelqeRVRWALEkaqLWDEVKDRlDAPAGKLSGGQQQRLCIARALAF 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 147 KPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtgTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT---VF-----ELS 218
Cdd:PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPtreVFtnprhELT 241
|
....
gi 917220261 219 DKYL 222
Cdd:PRK14247 242 EKYV 245
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
19-217 |
2.34e-25 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 103.64 E-value: 2.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 19 DVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEI------RKLsGVVTESAGLYHQLSGQ 92
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIflpphrRRI-GYVFQEARLFPHLSVR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLsffadLYGVK------EKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDpDGIK 166
Cdd:COG4148 96 GNL-----LYGRKrapraeRRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALD-LARK 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 917220261 167 M-VLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:COG4148 170 AeILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-160 |
3.38e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 100.96 E-value: 3.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsIFGhdpatsGDEIRKLSGVVTESA 83
Cdd:COG4674 13 VEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSV-LFG------GTDLTGLDEHEIARL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 GL---------YHQLSGQENL------------SFFADLyGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAK 142
Cdd:COG4674 86 GIgrkfqkptvFEELTVFENLelalkgdrgvfaSLFARL-TAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGM 164
|
170
....*....|....*...
gi 917220261 143 ALLHKPKLLYLDEPTNGL 160
Cdd:COG4674 165 LLAQDPKLLLLDEPVAGM 182
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
16-212 |
3.73e-25 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 98.92 E-value: 3.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESAGLYHQlSGQENL 95
Cdd:cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDT-TLRNNL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 96 sffadlygvkekartaellelfdlaehkdkpaGT-YSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKK 174
Cdd:cd03247 96 --------------------------------GRrFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
|
170 180 190
....*....|....*....|....*....|....*...
gi 917220261 175 YNKEtgTTIIICSHVLHQLEPVcDSFAFLENRTIVEQG 212
Cdd:cd03247 144 VLKD--KTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
16-220 |
4.01e-25 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 100.64 E-value: 4.01e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDE-IRKLSGVVTESAGLYHQlSGQEN 94
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAwLRRQVGVVLQENVLFNR-SIRDN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 95 LSFF---ADLYGVKEKARTAELLE-LFDLAEHKDKPAG----TYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIK 166
Cdd:cd03252 96 IALAdpgMSMERVIEAAKLAGAHDfISELPEGYDTIVGeqgaGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 917220261 167 MVLSYLKKYNKetGTTIIICSHVLHQLEpVCDSFAFLENRTIVEQGTVFELSDK 220
Cdd:cd03252 176 AIMRNMHDICA--GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE 226
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-188 |
5.56e-25 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 103.10 E-value: 5.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD----PAtsgdEIRKLSg 77
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDithvPA----ENRHVN- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 VVTESAGLYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAaeiTPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169
|
170 180 190
....*....|....*....|....*....|....
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSH 188
Cdd:PRK09452 170 ESLSALDYKLRKQMQNELKALQRKLGITFVFVTH 203
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-213 |
7.46e-25 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 102.47 E-value: 7.46e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLsGVVTE 81
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV-GFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE-------KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRErpnaaaiKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT 213
Cdd:PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-226 |
1.79e-24 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 99.51 E-value: 1.79e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHdpatsgdeirklSGVVTESAGLYHQLSGQENLS 96
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE------------VSVIAISAGLSGQLTGIENIE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 97 FFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLK 173
Cdd:PRK13546 108 FKMLCMGFKRkeiKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 174 KYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG---TVFELSDKYLKDVK 226
Cdd:PRK13546 188 EF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGeldDVLPKYEAFLNDFK 242
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
14-220 |
1.96e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 98.45 E-value: 1.96e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLyhqLSG- 91
Cdd:cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQDTFL---FSGt 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 -QENLSFFADLYGVKEKARTAELLELFDLAEHKDK-------PAGTY-STGMKKRLALAKALLHKPKLLYLDEPTNGLDP 162
Cdd:cd03254 93 iMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNgydtvlgENGGNlSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 163 DGIKMVLSYLKKYNKetGTTIIICSHVLHQLEPVcDSFAFLENRTIVEQGTVFELSDK 220
Cdd:cd03254 173 ETEKLIQEALEKLMK--GRTSIIIAHRLSTIKNA-DKILVLDDGKIIEEGTHDELLAK 227
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-228 |
2.08e-24 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 99.45 E-value: 2.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGD---EIRKLS 76
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENiPAMSRSrlyTVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVTESAGLYHQLSGQENLSffadlYGVKEKARTAEL---------LELFDLAEHKDKPAGTYSTGMKKRLALAKALLHK 147
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVA-----YPLREHTQLPAPllhstvmmkLEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 148 PKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKylKDVKV 227
Cdd:PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN--PDPRV 239
|
.
gi 917220261 228 R 228
Cdd:PRK11831 240 R 240
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-188 |
2.81e-24 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 98.91 E-value: 2.81e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPA-TSGDEIRKLSGVV 79
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEgLPGHQIARMGVVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 T-ESAGLYHQLSGQENL----------SFFADL-----YGVKEKA---RTAELLELFDLAEHKDKPAGTYSTGMKKRLAL 140
Cdd:PRK11300 85 TfQHVRLFREMTVIENLlvaqhqqlktGLFSGLlktpaFRRAESEaldRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 917220261 141 AKALLHKPKLLYLDEPTNGLDP---DGIKMVLSYLKkynKETGTTIIICSH 188
Cdd:PRK11300 165 ARCMVTQPEILMLDEPAAGLNPketKELDELIAELR---NEHNVTVLLIEH 212
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-214 |
2.87e-24 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 98.99 E-value: 2.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHS---------VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGD 70
Cdd:PRK10419 3 LLNVSGLSHHYAHGGlsgkhqhqtVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 71 EIRKLSGVVtesaglyhQLSGQENLSFF-----------------ADLYGVKEKARTAELLELFDLA-EHKDKPAGTYST 132
Cdd:PRK10419 83 QRKAFRRDI--------QMVFQDSISAVnprktvreiireplrhlLSLDKAERLARASEMLRAVDLDdSVLDKRPPQLSG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 133 GMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ 234
|
..
gi 917220261 213 TV 214
Cdd:PRK10419 235 PV 236
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
21-219 |
3.07e-24 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 97.90 E-value: 3.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 21 NFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESaGLYHQLSGQEN--LSFF 98
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERPVSMLFQEN-NLFPHLTVAQNigLGLR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 99 ADL-YGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPdGIK--MvLSYLKKY 175
Cdd:COG3840 98 PGLkLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDP-ALRqeM-LDLVDEL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 917220261 176 NKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSD 219
Cdd:COG3840 176 CRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLD 219
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-188 |
6.70e-24 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 97.85 E-value: 6.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEirklSGVVT 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE----RGVVF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQLSGQENLSFFADLYGVKEKARTA---ELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:PRK11248 77 QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEiahQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156
|
170 180 190
....*....|....*....|....*....|.
gi 917220261 158 NGLDPDGIKMVLSYLKKYNKETGTTIIICSH 188
Cdd:PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITH 187
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-220 |
1.10e-23 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 99.04 E-value: 1.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIrILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTE 81
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGA-LPAHV*GPDAGRRPWRF*TWCANRRALRRTIG*HRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 -SAGLYHQLSGQENLSFFA---DLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:NF000106 93 vR*GRRESFSGRENLYMIGr*lDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPT 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 158 NGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDK 220
Cdd:NF000106 173 TGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTK 234
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-222 |
1.28e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 96.83 E-value: 1.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 11 FGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPD-----SGEISIFGHD---PATSGDEIRKLSGVVTES 82
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNiysPDVDPIEVRREVGMVFQY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 AGLYHQLSGQENLSFFADLYG-VKEKARTAELLE-------LFDLAEH--KDKPaGTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:PRK14267 94 PNPFPHLTIYDNVAIGVKLNGlVKSKKELDERVEwalkkaaLWDEVKDrlNDYP-SNLSGGQRQRLVIARALAMKPKILL 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 153 LDEPTNGLDPDGIKMVLSYLKKYNKEtgTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG---TVF-----ELSDKYL 222
Cdd:PRK14267 173 MDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGptrKVFenpehELTEKYV 248
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
14-221 |
1.36e-23 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 100.74 E-value: 1.36e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHdpatsgdeirklSGVVTESAGLYHQLSGQE 93
Cdd:PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS------------AALIAISSGLNGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 94 NLSFFADLYGV-KEKAR--TAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLS 170
Cdd:PRK13545 105 NIELKGLMMGLtKEKIKeiIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLD 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 917220261 171 YLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKY 221
Cdd:PRK13545 185 KMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-188 |
1.49e-23 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 95.40 E-value: 1.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVT 80
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQLSGQENLSFfaDLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:PRK13540 81 HRSGINPYLTLRENCLY--DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158
|
170 180
....*....|....*....|....*...
gi 917220261 161 DPDGIKMVLSYLKKYNKEtGTTIIICSH 188
Cdd:PRK13540 159 DELSLLTIITKIQEHRAK-GGAVLLTSH 185
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-191 |
2.10e-23 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 96.34 E-value: 2.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISifgHDPATSgdeirklSGVVT 80
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---RNGKLR-------IGYVP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESagLYHQLSGQENLSFFADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:PRK09544 74 QK--LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151
|
170 180 190
....*....|....*....|....*....|.
gi 917220261 161 DPDGIKMVLSYLKKYNKETGTTIIICSHVLH 191
Cdd:PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
17-188 |
2.16e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 96.73 E-value: 2.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVVTE-------SAGLYHQ 88
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREvNAENEKWVRSKVGLVFQdpddqvfSSTVWDD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 LS-GQENLSFFADlyGVKEKARTAelLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKM 167
Cdd:PRK13647 101 VAfGPVNMGLDKD--EVERRVEEA--LKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
|
170 180
....*....|....*....|.
gi 917220261 168 VLSYLKKYNKEtGTTIIICSH 188
Cdd:PRK13647 177 LMEILDRLHNQ-GKTVIVATH 196
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-222 |
2.37e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 96.27 E-value: 2.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 15 SVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKP-DS-----GEISIFGHDP-ATSGDEIRKLSGVVTESAGLYH 87
Cdd:PRK14246 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIyDSkikvdGKVLYFGKDIfQIDAIKLRKEVGMVFQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGQENLSFFADLYGVKEKARTAELLE--------LFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PRK14246 104 HLSIYDNIAYPLKSHGIKEKREIKKIVEeclrkvglWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 160 LDPDGIKMVLSYLKKYNKEtgTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT---VF-----ELSDKYL 222
Cdd:PRK14246 184 IDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSsneIFtspknELTEKYV 252
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
17-217 |
4.08e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 96.24 E-value: 4.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfGHDPATSGDE------IRKLSGVVTESAglYHQL- 89
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKnkklkpLRKKVGIVFQFP--EHQLf 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 90 --SGQENLSFFADLYGVKE---KARTAELLELFDLAEH-KDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPD 163
Cdd:PRK13634 100 eeTVEKDICFGPMNFGVSEedaKQKAREMIELVGLPEElLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 164 GIKMVLSYLKKYNKETGTTIIIcshVLHQLEPV---CDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK13634 180 GRKEMMEMFYKLHKEKGLTTVL---VTHSMEDAaryADQIVVMHKGTVFLQGTPREI 233
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-220 |
6.22e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 95.15 E-value: 6.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSV-----LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIR-K 74
Cdd:COG1101 1 MLELKNLSKTFNPGTVnekraLDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRaK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 LSGVVTE--SAGLYHQLSGQENLSfFADL--------YGV--KEKARTAELLELFDLA-EHK-DKPAGTYSTGMKKRLAL 140
Cdd:COG1101 81 YIGRVFQdpMMGTAPSMTIEENLA-LAYRrgkrrglrRGLtkKRRELFRELLATLGLGlENRlDTKVGLLSGGQRQALSL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 141 AKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETG-TTIIIcSHVLHQ-LEpvcdsfafLENRTIV-EQGT-VFE 216
Cdd:COG1101 160 LMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNlTTLMV-THNMEQaLD--------YGNRLIMmHEGRiILD 230
|
....
gi 917220261 217 LSDK 220
Cdd:COG1101 231 VSGE 234
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
3-220 |
6.54e-23 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 98.49 E-value: 6.54e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 3 NVTGA------SKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDE-IRK 74
Cdd:PRK13657 330 RVKGAvefddvSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAsLRR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 LSGVVTESAGLYHQlSGQENLSFfadlyGvKEKARTAELLELFDLAEHKD----KPAGtYST-----------GMKKRLA 139
Cdd:PRK13657 410 NIAVVFQDAGLFNR-SIEDNIRV-----G-RPDATDEEMRAAAERAQAHDfierKPDG-YDTvvgergrqlsgGERQRLA 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 140 LAKALLHKPKLLYLDEPTNGLD---PDGIKMVLSYLKKyNKetgTTIIICshvlHQLEPV--CDSFAFLENRTIVEQGTV 214
Cdd:PRK13657 482 IARALLKDPPILILDEATSALDvetEAKVKAALDELMK-GR---TTFIIA----HRLSTVrnADRILVFDNGRVVESGSF 553
|
....*.
gi 917220261 215 FELSDK 220
Cdd:PRK13657 554 DELVAR 559
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-231 |
6.74e-23 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 94.76 E-value: 6.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPA-TSGDEI-RKLSgV 78
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVAtTPSRELaKRLA-I 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAGLYHQLSGQENLSFfadlyG----------VKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKP 148
Cdd:COG4604 80 LRQENHINSRLTVRELVAF-----GrfpyskgrltAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDT 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 149 KLLYLDEPTNGLDpdgIK-----MVLsyLKKYNKETGTTIIIcshVLHQLepvcdSFA--------FLENRTIVEQGTVF 215
Cdd:COG4604 155 DYVLLDEPLNNLD---MKhsvqmMKL--LRRLADELGKTVVI---VLHDI-----NFAscyadhivAMKDGRVVAQGTPE 221
|
250 260
....*....|....*....|..
gi 917220261 216 E------LSDKYlkDVKVRVLT 231
Cdd:COG4604 222 EiitpevLSDIY--DTDIEVEE 241
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-220 |
6.85e-23 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 98.32 E-value: 6.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSGDEIRKLSGV 78
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNInyNKLDHKLAAQLGIGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAGLYHQLSGQENLsFFADL-----YGV------KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHK 147
Cdd:PRK09700 85 IYQELSVIDELTVLENL-YIGRHltkkvCGVniidwrEMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 148 PKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDK 220
Cdd:PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-213 |
7.14e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 95.10 E-value: 7.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDS-----GEISIFG---HDPATSGDEIR 73
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNqniYERRVNLNRLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 74 KLSGVVTESAGLYhQLSGQENLSFFADLYGVKEKARTAELLE-------LFDLAEHK-DKPAGTYSTGMKKRLALAKALL 145
Cdd:PRK14258 88 RQVSMVHPKPNLF-PMSVYDNVAYGVKIVGWRPKLEIDDIVEsalkdadLWDEIKHKiHKSALDLSGGQQQRLCIARALA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 146 HKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFL---ENR--TIVEQGT 213
Cdd:PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFkgnENRigQLVEFGL 239
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-237 |
8.72e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 95.05 E-value: 8.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHS-VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDpatSGD-----EIRK 74
Cdd:PRK13644 1 MIRLENVSYSYPDGTpALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID---TGDfsklqGIRK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 LSGVVTESAGLyhQLSG---QENLSFFAD---LYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKP 148
Cdd:PRK13644 78 LVGIVFQNPET--QFVGrtvEEDLAFGPEnlcLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 149 KLLYLDEPTNGLDPDGIKMVLSYLKKYNkETGTTIIICSHVLHQLEpVCDSFAFLENRTIVEQGTVFE-LSDKYLKDVKv 227
Cdd:PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLH-EKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENvLSDVSLQTLG- 232
|
250
....*....|
gi 917220261 228 rvLTEPAMIQ 237
Cdd:PRK13644 233 --LTPPSLIE 240
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-188 |
1.52e-22 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 97.71 E-value: 1.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsIFGHDPATS---GDEIRKLSG 77
Cdd:PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI-IYEQDLIVArlqQDPPRNVEG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 VVTE--SAGL---------YHQLSGQ-------ENLSFFADLYGVKEKA-------RTAELLELFDLaeHKDKPAGTYST 132
Cdd:PRK11147 82 TVYDfvAEGIeeqaeylkrYHDISHLvetdpseKNLNELAKLQEQLDHHnlwqlenRINEVLAQLGL--DPDAALSSLSG 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 133 GMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKetgtTIIICSH 188
Cdd:PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG----SIIFISH 211
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
16-220 |
2.21e-22 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 93.06 E-value: 2.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLYHQlSGQEN 94
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGLVSQDVFLFND-TVAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 95 LSFF---ADLYGVKEKARTAELLELFD-LAEHKDKPAG----TYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIK 166
Cdd:cd03251 96 IAYGrpgATREEVEEAARAANAHEFIMeLPEGYDTVIGergvKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 167 MV---LSYLKKyNKetgTTIIICshvlHQLEPV--CDSFAFLENRTIVEQGTVFELSDK 220
Cdd:cd03251 176 LVqaaLERLMK-NR---TTFVIA----HRLSTIenADRIVVLEDGKIVERGTHEELLAQ 226
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
11-216 |
2.26e-22 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 93.56 E-value: 2.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 11 FGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIK--PD---SGEISIFGHD---PATSGDEIRKLSGVVtes 82
Cdd:COG1117 21 YGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDliPGarvEGEILLDGEDiydPDVDVVELRRRVGMV--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 aglyHQ------LSGQENLSFFADLYGVKEKARTAELLE-------LFDlaEHKDK---PAGTYSTGMKKRLALAKALLH 146
Cdd:COG1117 98 ----FQkpnpfpKSIYDNVAYGLRLHGIKSKSELDEIVEeslrkaaLWD--EVKDRlkkSALGLSGGQQQRLCIARALAV 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 147 KPKLLYLDEPTNGLDP---DGIKMVLSYLKK-YnketgtTIIICSHVLHQLEPVCDSFAFLENRTIVEQG---TVFE 216
Cdd:COG1117 172 EPEVLLMDEPTSALDPistAKIEELILELKKdY------TIVIVTHNMQQAARVSDYTAFFYLGELVEFGpteQIFT 242
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
8-161 |
5.39e-22 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 94.52 E-value: 5.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSgVVTESAGLYH 87
Cdd:PRK11607 26 TKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN-MMFQSYALFP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGQENLSFfadlyGVKE--------KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PRK11607 105 HMTVEQNIAF-----GLKQdklpkaeiASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179
|
..
gi 917220261 160 LD 161
Cdd:PRK11607 180 LD 181
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
12-217 |
5.93e-22 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 95.66 E-value: 5.93e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVVTESAglyHQLS 90
Cdd:PRK11160 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPiADYSEAALRQAISVVSQRV---HLFS 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 G--QENLSFfadlygVKEKARTAELLE------LFDLAEhKDKPAGTY--------STGMKKRLALAKALLHKPKLLYLD 154
Cdd:PRK11160 428 AtlRDNLLL------AAPNASDEALIEvlqqvgLEKLLE-DDKGLNAWlgeggrqlSGGEQRRLGIARALLHDAPLLLLD 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYNKetGTTIIICSHVLHQLEPVcDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK11160 501 EPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQEL 560
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-194 |
7.59e-22 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 95.43 E-value: 7.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVV 79
Cdd:TIGR02857 322 LEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPlADADADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESAGLYHQlSGQENLSFF---ADLYGVKEKARTAELLELF-DLAEHKDKPAGT----YSTGMKKRLALAKALLHKPKLL 151
Cdd:TIGR02857 402 PQHPFLFAG-TIAENIRLArpdASDAEIREALERAGLDEFVaALPQGLDTPIGEggagLSGGQAQRLALARAFLRDAPLL 480
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 917220261 152 YLDEPTNGLDPDGIKMVLSYLKKYNKetGTTIIICSHVLHQLE 194
Cdd:TIGR02857 481 LLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAA 521
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
15-215 |
9.79e-22 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 95.11 E-value: 9.79e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 15 SVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPD---SGEISIFGHdPATSgDEIRKLSGVVTESAGLYHQLSG 91
Cdd:TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGM-PIDA-KEMRAISAYVQQDDLFIPTLTV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENLSFFA------DLYGVKEKARTAELLELFDLAEHKDKPAGT------YSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:TIGR00955 117 REHLMFQAhlrmprRVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEPTSG 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 160 LDPDGIKMVLSYLKKYnkETGTTIIICShvLHQlePVCDSFAFLENRTIVEQG-TVF 215
Cdd:TIGR00955 197 LDSFMAYSVVQVLKGL--AQKGKTIICT--IHQ--PSSELFELFDKIILMAEGrVAY 247
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
12-198 |
1.29e-21 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 90.99 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSH--SVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIR-----KLSGVVTESAG 84
Cdd:PRK10584 19 GEHelSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARaklraKHVGFVFQSFM 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 85 LYHQLSGQENLSFFADLYGVKE---KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:PRK10584 99 LIPTLNALENVELPALLRGESSrqsRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
170 180 190
....*....|....*....|....*....|....*..
gi 917220261 162 PDGIKMVLSYLKKYNKETGTTIIICSHVLhQLEPVCD 198
Cdd:PRK10584 179 RQTGDKIADLLFSLNREHGTTLILVTHDL-QLAARCD 214
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
17-223 |
1.95e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 91.62 E-value: 1.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSGDeIRKLSGVVTESAGlyHQLSG--- 91
Cdd:PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlSEETVWD-VRRQVGMVFQNPD--NQFVGatv 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMV 168
Cdd:PRK13635 100 QDDVAFGLENIGVPREemvERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 169 LSYLKKYNKETGTTIIicsHVLHQLEPV--CDSFAFLENRTIVEQGT---VFELSDKYLK 223
Cdd:PRK13635 180 LETVRQLKEQKGITVL---SITHDLDEAaqADRVIVMNKGEILEEGTpeeIFKSGHMLQE 236
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
14-217 |
2.20e-21 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 90.68 E-value: 2.20e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLYhQLSGQ 92
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEPVLF-DGTIA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLSF---FADLYGVKEKARTAELLELF-DLAEHKDKPAGTY----STGMKKRLALAKALLHKPKLLYLDEPTNGLDPDG 164
Cdd:cd03249 95 ENIRYgkpDATDEEVEEAAKKANIHDFImSLPDGYDTLVGERgsqlSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 165 IKMVLSYLKKYNKETgTTIIICshvlHQLEPV--CDSFAFLENRTIVEQGTVFEL 217
Cdd:cd03249 175 EKLVQEALDRAMKGR-TTIVIA----HRLSTIrnADLIAVLQNGQVVEQGTHDEL 224
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
12-188 |
2.25e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 88.81 E-value: 2.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG-DEIRKLSGVVTesaglyhqls 90
Cdd:cd03246 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDpNELGDHVGYLP---------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 gQEnlsffadlygvkekartaelLELFD--LAEHkdkpagTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMV 168
Cdd:cd03246 83 -QD--------------------DELFSgsIAEN------ILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135
|
170 180
....*....|....*....|
gi 917220261 169 LSYLKKYnKETGTTIIICSH 188
Cdd:cd03246 136 NQAIAAL-KAAGATRIVIAH 154
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
16-212 |
2.80e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 90.02 E-value: 2.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFI-----RILNGVIKpdSGEISIFGHDPatSGDEIRKLSGVVTESAGLYHQLS 90
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLdaisgRVEGGGTT--SGQILFNGQPR--KPDQFQKCVAYVRQDDILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 GQENLSFFADL---YGVKEKART--AELLELFDLAehkDKPAGTY-----STGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:cd03234 98 VRETLTYTAILrlpRKSSDAIRKkrVEDVLLRDLA---LTRIGGNlvkgiSGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 161 DPDGIKMVLSYLKKYNKetGTTIIICShvLHQ----LEPVCDSFAFLENRTIVEQG 212
Cdd:cd03234 175 DSFTALNLVSTLSQLAR--RNRIVILT--IHQprsdLFRLFDRILLLSSGEIVYSG 226
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
3-214 |
3.21e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 90.95 E-value: 3.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 3 NVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVVTE 81
Cdd:PRK13650 9 NLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLlTEENVWDIRHKIGMVFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGlyHQLSG---QENLSFFADLYGV--KE-KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDE 155
Cdd:PRK13650 89 NPD--NQFVGatvEDDVAFGLENKGIphEEmKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 156 PTNGLDPDGIKMVLSYLKKYNKETGTTIIicsHVLHQLEPVCdsfafLENRTIV-EQGTV 214
Cdd:PRK13650 167 ATSMLDPEGRLELIKTIKGIRDDYQMTVI---SITHDLDEVA-----LSDRVLVmKNGQV 218
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
16-245 |
3.62e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 91.01 E-value: 3.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGD----EIRKLSGVVTESAGlyHQLSG 91
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAktvwDIREKVGIVFQNPD--NQFVG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 ---QENLSFFADLYGV---KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGI 165
Cdd:PRK13640 100 atvGDDVAFGLENRAVprpEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 166 KMVLSYLKKYNKETGTTIIICSHVLHQLEpVCDSFAFLENRTIVEQGTvfelsdkylkdvKVRVLTEPAMIQRDAASFPF 245
Cdd:PRK13640 180 EQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGS------------PVEIFSKVEMLKEIGLDIPF 246
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
14-209 |
3.67e-21 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 89.57 E-value: 3.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-----PAtsgdEIRKLSGVVTESAGLYhq 88
Cdd:cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDirqldPA----DLRRNIGYVPQDVTLF-- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 lSG--QENLSFFADLYGVKEKARTAELLELFDLAehKDKPAG----------TYSTGMKKRLALAKALLHKPKLLYLDEP 156
Cdd:cd03245 91 -YGtlRDNITLGAPLADDERILRAAELAGVTDFV--NKHPNGldlqigergrGLSGGQRQAVALARALLNDPPILLLDEP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 917220261 157 TNGLDPDGIKMVLSYLKKYNKetGTTIIICSHVLHQLEpvcdsfafLENRTIV 209
Cdd:cd03245 168 TSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD--------LVDRIIV 210
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
19-212 |
4.19e-21 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 89.09 E-value: 4.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 19 DVNFkaEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESaGLYHQLSGQEN---- 94
Cdd:cd03298 18 DLTF--AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN-NLFAHLTVEQNvglg 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 95 LSFFADLYGVKEKARTAELLELfDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKK 174
Cdd:cd03298 95 LSPGLKLTAEDRQAIEVALARV-GLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 917220261 175 YNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-213 |
7.06e-21 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 89.47 E-value: 7.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDE--------- 71
Cdd:COG4598 8 ALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPDRdgelvpadr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 72 -----IRKLSGVVTESAGLYHQLSGQENLsFFADLY--GVK-----EKARtaELLELFDLAEHKDKPAGTYSTGMKKRLA 139
Cdd:COG4598 88 rqlqrIRTRLGMVFQSFNLWSHMTVLENV-IEAPVHvlGRPkaeaiERAE--ALLAKVGLADKRDAYPAHLSGGQQQRAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 140 LAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIIcshVLHQLepvcdSFA--------FLENRTIVEQ 211
Cdd:COG4598 165 IARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLV---VTHEM-----GFArdvsshvvFLHQGRIEEQ 235
|
..
gi 917220261 212 GT 213
Cdd:COG4598 236 GP 237
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-219 |
8.69e-21 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 92.04 E-value: 8.69e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAtsgdeirKLSGVVT 80
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCA-------RLTPAKA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYhqLSGQENLsFFADLyGVKE------------KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKP 148
Cdd:PRK15439 84 HQLGIY--LVPQEPL-LFPNL-SVKEnilfglpkrqasMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 149 KLLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSD 219
Cdd:PRK15439 160 RILILDEPTASLTPAETERLFSRIREL-LAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
17-212 |
1.03e-20 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 92.17 E-value: 1.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISI-FGHDPATSGDEIRKLSGVVTESAGLYHQLSGQ--- 92
Cdd:TIGR03269 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLyph 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ----ENLSFFADLYGVKEKARTAELLEL----FDLAEHK---DKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:TIGR03269 380 rtvlDNLTEAIGLELPDELARMKAVITLkmvgFDEEKAEeilDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 917220261 162 PDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:TIGR03269 460 PITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
8-233 |
1.05e-20 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 88.92 E-value: 1.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDeiRKLSGVVtesAGLYH 87
Cdd:PRK11231 9 TVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS--RQLARRL---ALLPQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGQEN--------------LSFFADLyGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYL 153
Cdd:PRK11231 84 HHLTPEGitvrelvaygrspwLSLWGRL-SAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 154 DEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFE-LSDKYLK---DVKVRV 229
Cdd:PRK11231 163 DEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEvMTPGLLRtvfDVEAEI 241
|
....
gi 917220261 230 LTEP 233
Cdd:PRK11231 242 HPEP 245
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-212 |
1.26e-20 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 88.87 E-value: 1.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDE---------- 71
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKdgqlkvadkn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 72 ----IRKLSGVVTESAGLYHQLSGQEN-LSFFADLYGV-KEKARTAELLELfDLAEHKDKPAGTY----STGMKKRLALA 141
Cdd:PRK10619 86 qlrlLRTRLTMVFQHFNLWSHMTVLENvMEAPIQVLGLsKQEARERAVKYL-AKVGIDERAQGKYpvhlSGGQQQRVSIA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 142 KALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:PRK10619 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-217 |
5.73e-20 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 88.19 E-value: 5.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF----GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKP---DSGEISIFGHDPAT-SGDEI 72
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKlSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 73 RKLSG----------------------VVTESAGLYHQLSGQEnlsffadlygvkEKARTAELLELFDL---AEHKDKPA 127
Cdd:COG0444 81 RKIRGreiqmifqdpmtslnpvmtvgdQIAEPLRIHGGLSKAE------------ARERAIELLERVGLpdpERRLDRYP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 128 GTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDgIKM-VLSYLKKYNKETGTTIIICSH----VLHqlepVCDsfaf 202
Cdd:COG0444 149 HELSGGMRQRVMIARALALEPKLLIADEPTTALDVT-IQAqILNLLKDLQRELGLAILFITHdlgvVAE----IAD---- 219
|
250 260
....*....|....*....|..
gi 917220261 203 lenR-------TIVEQGTVFEL 217
Cdd:COG0444 220 ---RvavmyagRIVEEGPVEEL 238
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-212 |
6.66e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 86.75 E-value: 6.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILN--GVIKPD---SGEISIFGHD---PATSGDEI 72
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDLNPEvtiTGSIVYNGHNiysPRTDTVDL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 73 RKLSGVVTESAGLYhQLSGQENLSFFADLYGVKEKARTAELLE-------LFDlaEHKDK---PAGTYSTGMKKRLALAK 142
Cdd:PRK14239 85 RKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEkslkgasIWD--EVKDRlhdSALGLSGGQQQRVCIAR 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 143 ALLHKPKLLYLDEPTNGLDPDGIKMVLSYLkkYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETL--LGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
17-188 |
1.07e-19 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 85.98 E-value: 1.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEirklSGVVTESAGLYHQLSGQENLS 96
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD----RMVVFQNYSLLPWLTVRENIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 97 F-----FADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSY 171
Cdd:TIGR01184 77 LavdrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156
|
170
....*....|....*..
gi 917220261 172 LKKYNKETGTTIIICSH 188
Cdd:TIGR01184 157 LMQIWEEHRVTVLMVTH 173
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
17-270 |
1.68e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 86.42 E-value: 1.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSG---DEIRKLSGVV--------TESA 83
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYhiTPETGNknlKKLRKKVSLVfqfpeaqlFENT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 GLYHQLSGQENLSFFADlygvKEKARTAELLELFDLAEH-KDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDP 162
Cdd:PRK13641 103 VLKDVEFGPKNFGFSED----EAKEKALKWLKKVGLSEDlISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 163 DGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL-SDKylKDVKVRVLTEPAMiQRDAA 241
Cdd:PRK13641 179 EGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIfSDK--EWLKKHYLDEPAT-SRFAS 254
|
250 260
....*....|....*....|....*....
gi 917220261 242 SFPFDQLKPGEAVFTLPskEHISGLLKEL 270
Cdd:PRK13641 255 KLEKGGFKFSEMPLTID--ELVDGIKNNL 281
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-217 |
3.22e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 85.83 E-value: 3.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEiSIFGHDPATSGdeIRKLSGV--V 79
Cdd:PRK13645 12 VSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGDYAIPAN--LKKIKEVkrL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESAGLYHQL--------SGQENLSFF-ADLYGVKEKA--RTAELLELFDLA-EHKDKPAGTYSTGMKKRLALAKALLHK 147
Cdd:PRK13645 89 RKEIGLVFQFpeyqlfqeTIEKDIAFGpVNLGENKQEAykKVPELLKLVQLPeDYVKRSPFELSGGQKRRVALAGIIAMD 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 148 PKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK13645 169 GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-161 |
4.34e-19 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 84.73 E-value: 4.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsIFGHDP-ATSGDEIRklsgVVTES 82
Cdd:PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPlAEAREDTR----LMFQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 AGLYHQLSGQENLSFfadlyGVKEKARTAEL--LELFDLAEH-KDKPAgTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PRK11247 90 ARLLPWKKVIDNVGL-----GLKGQWRDAALqaLAAVGLADRaNEWPA-ALSGGQKQRVALARALIHRPGLLLLDEPLGA 163
|
..
gi 917220261 160 LD 161
Cdd:PRK11247 164 LD 165
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
14-239 |
4.87e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 85.22 E-value: 4.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDE----IRKLSGVVTE--SAGLY 86
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITiTHKTKDKyirpVRKRIGMVFQfpESQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 87 HQLSGQENL----SFFADLYGVKEKARTAelleLFDLAEHKD---KPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PRK13646 100 EDTVEREIIfgpkNFKMNLDEVKNYAHRL----LMDLGFSRDvmsQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 160 LDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL--SDKYLKDVKVRvLTEPAMIQ 237
Cdd:PRK13646 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELfkDKKKLADWHIG-LPEIVQLQ 254
|
..
gi 917220261 238 RD 239
Cdd:PRK13646 255 YD 256
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-255 |
6.01e-19 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 86.91 E-value: 6.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTgasKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIkPD---SGEISIfghdpatSGDEIRKLSG 77
Cdd:PRK13549 8 MKNIT---KTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHgtyEGEIIF-------EGEELQASNI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 VVTESAG---------LYHQLSGQENLSFFADL--YGV----KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAK 142
Cdd:PRK13549 77 RDTERAGiaiihqelaLVKELSVLENIFLGNEItpGGImdydAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 143 ALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLEN-RTIveqGTvfelsdky 221
Cdd:PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRDgRHI---GT-------- 224
|
250 260 270
....*....|....*....|....*....|....*....
gi 917220261 222 lkdVKVRVLTEPA----MIQRDAAS-FPFDQLKPGEAVF 255
Cdd:PRK13549 225 ---RPAAGMTEDDiitmMVGRELTAlYPREPHTIGEVIL 260
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
17-216 |
7.92e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 84.03 E-value: 7.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsIFGHDPATSGD--EIRKLSGVVTE--------SAGLY 86
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNfeKLRKHIGIVFQnpdnqfvgSIVKY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 87 HQLSGQENLSFFADlygvKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIK 166
Cdd:PRK13648 104 DVAFGLENHAVPYD----EMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 917220261 167 MVLSYLKKYNKETGTTIIICSHVLHQlepvcdsfAFLENRTIV-EQGTVFE 216
Cdd:PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSE--------AMEADHVIVmNKGTVYK 222
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
16-213 |
9.44e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 82.93 E-value: 9.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG-DEIRKLSGVVTESAGLYhqlSG--Q 92
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGlHDLRSRISIIPQDPVLF---SGtiR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLSFF-----ADLYGVKEKARTAELLElfDLAEHKDKPA----GTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPD 163
Cdd:cd03244 96 SNLDPFgeysdEELWQALERVGLKEFVE--SLPGGLDTVVeeggENLSVGQRQLLCLARALLRKSKILVLDEATASVDPE 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 917220261 164 GIKMVLSYLKKYNKETgTTIIICshvlHQLEPV--CDSFAFLENRTIVEQGT 213
Cdd:cd03244 174 TDALIQKTIREAFKDC-TVLTIA----HRLDTIidSDRILVLDKGRVVEFDS 220
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-161 |
1.03e-18 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 86.14 E-value: 1.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfghdpatsGDEIrKLSGVVTE 81
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI--------GETV-KLAYVDQS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGL------YHQLS-GQENLsffaDLYGVKEKARTaeLLELFDL-AEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYL 153
Cdd:TIGR03719 394 RDALdpnktvWEEISgGLDII----KLGKREIPSRA--YVGRFNFkGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467
|
....*...
gi 917220261 154 DEPTNGLD 161
Cdd:TIGR03719 468 DEPTNDLD 475
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
17-217 |
1.08e-18 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 85.47 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGD----EI-RKLSGVVTESAGLYHQLSG 91
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDaelrEVrRKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENLSFFADLYGVKEKARTAELLELF---DLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMV 168
Cdd:PRK10070 124 LDNTAFGMELAGINAEERREKALDALrqvGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 917220261 169 LSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK10070 204 QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
6-195 |
1.10e-18 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 82.70 E-value: 1.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 6 GASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIK--PDSGEISIFGHDpatsgdeirklsgvvtesa 83
Cdd:COG2401 35 GVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDVPDNQ------------------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 gLYHQLSGQENLSFFADLYGVKEKARTAELLELFDLAehkdKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPD 163
Cdd:COG2401 96 -FGREASLIDAIGRKGDFKDAVELLNAVGLSDAVLWL----RRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQ 170
|
170 180 190
....*....|....*....|....*....|....*
gi 917220261 164 GIKMVLSYLKKYNKETGTTIIICSH---VLHQLEP 195
Cdd:COG2401 171 TAKRVARNLQKLARRAGITLVVATHhydVIDDLQP 205
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
2-223 |
1.51e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 83.63 E-value: 1.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfGHDPATSGDE------IRKL 75
Cdd:PRK13643 7 VNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-GDIVVSSTSKqkeikpVRKK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 SGVVTE--SAGLYHQlSGQENLSFFADLYGV-KEKAR--TAELLELFDLA-EHKDKPAGTYSTGMKKRLALAKALLHKPK 149
Cdd:PRK13643 86 VGVVFQfpESQLFEE-TVLKDVAFGPQNFGIpKEKAEkiAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPE 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 150 LLYLDEPTNGLDPDGiKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT---VFELSDkYLK 223
Cdd:PRK13643 165 VLVLDEPTAGLDPKA-RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTpsdVFQEVD-FLK 239
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-212 |
2.45e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 82.75 E-value: 2.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGdeiRKLSGVVT 80
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK---RGLLALRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQLSGQ-------ENLSFFADLYGVKEKA---RTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKL 150
Cdd:PRK13638 78 QVATVFQDPEQQifytdidSDIAFSLRNLGVPEAEitrRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 917220261 151 LYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG 212
Cdd:PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-188 |
2.87e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 82.73 E-value: 2.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHS--VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSG 77
Cdd:PRK13632 7 MIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITiSKENLKEIRKKIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 78 VVTESAGlyHQLSG---QENLSFfadlyGV--------KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLH 146
Cdd:PRK13632 87 IIFQNPD--NQFIGatvEDDIAF-----GLenkkvppkKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 917220261 147 KPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSH 188
Cdd:PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH 201
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
9-161 |
4.27e-18 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 84.30 E-value: 4.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 9 KSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSGDEIRKlsGV--VTE--- 81
Cdd:COG1129 260 EGLSVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKpvRIRSPRDAIRA--GIayVPEdrk 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQEN--LSFFADL--YGV----KEKARTAELLELFDL-AEHKDKPAGTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:COG1129 338 GEGLVLDLSIRENitLASLDRLsrGGLldrrRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLI 417
|
....*....
gi 917220261 153 LDEPTNGLD 161
Cdd:COG1129 418 LDEPTRGID 426
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
20-218 |
1.25e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 82.97 E-value: 1.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 20 VNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIkPDSGEISIfghdpatSGDEIRKLsgvvtESAGLYHQLS--GQ----- 92
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKI-------NGIELREL-----DPESWRKHLSwvGQnpqlp 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 -----ENLSFF------ADLYGVKEKARTAELLElfDLAEHKDKP----AGTYSTGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:PRK11174 436 hgtlrDNVLLGnpdasdEQLQQALENAWVSEFLP--LLPQGLDTPigdqAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 158 NGLDPDGIKMVLSYLKKYNKETgTTIIicshVLHQLEPV--CDSFAFLENRTIVEQGTVFELS 218
Cdd:PRK11174 514 ASLDAHSEQLVMQALNAASRRQ-TTLM----VTHQLEDLaqWDQIWVMQDGQIVQQGDYAELS 571
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
16-188 |
1.39e-17 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 82.85 E-value: 1.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLS----GVVTESAGLYHQLS 90
Cdd:PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATlDADALAQLRrehfGFIFQRYHLLSHLT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 GQENLSFFADLYGVKEKARTA---ELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKM 167
Cdd:PRK10535 103 AAQNVEVPAVYAGLERKQRLLraqELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE 182
|
170 180
....*....|....*....|.
gi 917220261 168 VLSYLKKYnKETGTTIIICSH 188
Cdd:PRK10535 183 VMAILHQL-RDRGHTVIIVTH 202
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
17-213 |
1.89e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 80.56 E-value: 1.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDE----IRKLSGVV---TESaglyhQ 88
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLiTSTSKNKdikqIRKKVGLVfqfPES-----Q 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 LSGQ---ENLSFFADLYGV-KEKA--RTAELLELFDLAEH-KDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:PRK13649 98 LFEEtvlKDVAFGPQNFGVsQEEAeaLAREKLALVGISESlFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 917220261 162 PDGIKMVLSYLKKYNkETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT 213
Cdd:PRK13649 178 PKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1-161 |
1.92e-17 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 81.61 E-value: 1.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVT--GASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH-----DPATSGdeir 73
Cdd:PRK11000 1 MASVTlrNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKrmndvPPAERG---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 74 klSGVVTESAGLYHQLSGQENLSFFADLYGVKEKAR------TAELLELFDLAEHKDKpagTYSTGMKKRLALAKALLHK 147
Cdd:PRK11000 77 --VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEInqrvnqVAEVLQLAHLLDRKPK---ALSGGQRQRVAIGRTLVAE 151
|
170
....*....|....
gi 917220261 148 PKLLYLDEPTNGLD 161
Cdd:PRK11000 152 PSVFLLDEPLSNLD 165
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1-255 |
2.06e-17 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 82.14 E-value: 2.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTgasKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDS--GEIsIFGHDPATSGDeIRKlsgv 78
Cdd:NF040905 4 MRGIT---KTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEI-LFDGEVCRFKD-IRD---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 vTESAGLY--HQ-------LSGQENLsFFAD---LYGV----KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAK 142
Cdd:NF040905 75 -SEALGIViiHQelalipyLSIAENI-FLGNeraKRGVidwnETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAK 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 143 ALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFaflenrTIVEQGTVFELSDKYL 222
Cdd:NF040905 153 ALSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSI------TVLRDGRTIETLDCRA 225
|
250 260 270
....*....|....*....|....*....|....*...
gi 917220261 223 KDVkvrvlTEP----AMIQRDAAS-FPFDQLKPGEAVF 255
Cdd:NF040905 226 DEV-----TEDriirGMVGRDLEDrYPERTPKIGEVVF 258
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1-197 |
3.20e-17 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 81.86 E-value: 3.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfghDPatsGDEIRKLS---- 76
Cdd:PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL---DP---NERLGKLRqdqf 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 -------------------GVVTESAGLYHQLSGQE-------NL-SFFADLYGVKEKARTAELLELFDLAEhkDKPAGT 129
Cdd:PRK15064 75 afeeftvldtvimghtelwEVKQERDRIYALPEMSEedgmkvaDLeVKFAEMDGYTAEARAGELLLGVGIPE--EQHYGL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 130 YST---GMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNketgTTIIICSHVLHQLEPVC 197
Cdd:PRK15064 153 MSEvapGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERN----STMIIISHDRHFLNSVC 219
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
4-224 |
3.21e-17 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 79.58 E-value: 3.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDP------ATSGDEIRKLS- 76
Cdd:PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGqlrdlyALSEAERRRLLr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 ---GVVTESA--GLYHQLSGQENLSffADLYGVKEK------ARTAELLEL--FDLAEHKDKPAgTYSTGMKKRLALAKA 143
Cdd:PRK11701 89 tewGFVHQHPrdGLRMQVSAGGNIG--ERLMAVGARhygdirATAGDWLERveIDAARIDDLPT-TFSGGMQQRLQIARN 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 144 LLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLhqlepvcdSFA-FLENRTIV-EQGTVFE--LSD 219
Cdd:PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL--------AVArLLAHRLLVmKQGRVVEsgLTD 237
|
....*
gi 917220261 220 KYLKD 224
Cdd:PRK11701 238 QVLDD 242
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
6-185 |
3.96e-17 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 81.52 E-value: 3.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 6 GASKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGE--------ISIFGHDPATsgDEIRKLS 76
Cdd:TIGR03719 9 RVSKVVpPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEarpqpgikVGYLPQEPQL--DPTKTVR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVTEsaGLYHQLSGQENLSFFADLYG---------VKEKARTAELLELFDLAEH---------------KDKPAGTYST 132
Cdd:TIGR03719 87 ENVEE--GVAEIKDALDRFNEISAKYAepdadfdklAAEQAELQEIIDAADAWDLdsqleiamdalrcppWDADVTKLSG 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 917220261 133 GMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYnkeTGTTIII 185
Cdd:TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEY---PGTVVAV 214
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
16-220 |
4.24e-17 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 78.81 E-value: 4.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLYHQLSGqEN 94
Cdd:cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAIGVVPQDTVLFNDTIG-YN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 95 LsffadLYGvKEKARTAELLELFDLAEHKDK----PAGtYST-----------GMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:cd03253 95 I-----RYG-RPDATDEEVIEAAKAAQIHDKimrfPDG-YDTivgerglklsgGEKQRVAIARAILKNPPILLLDEATSA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 160 LDPDGIKMVLSYLKKYNKetGTTIIICSHVLHQLEPvCDSFAFLENRTIVEQGTVFELSDK 220
Cdd:cd03253 168 LDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAK 225
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
12-188 |
1.01e-16 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 77.45 E-value: 1.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLYHQlS 90
Cdd:PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlKPEIYRQQVSYCAQTPTLFGD-T 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 GQENLSFFADLYGVK-EKARTAELLELFDLAEHK-DKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMV 168
Cdd:PRK10247 97 VYDNLIFPWQIRNQQpDPAIFLDDLERFALPDTIlTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
|
170 180
....*....|....*....|
gi 917220261 169 LSYLKKYNKETGTTIIICSH 188
Cdd:PRK10247 177 NEIIHRYVREQNIAVLWVTH 196
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
16-217 |
1.31e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 78.74 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISI----FGHDPATSGD-------------EIRKLSGV 78
Cdd:PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyIGDKKNNHELitnpyskkiknfkELRRRVSM 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAglYHQL---SGQENLSFFADLYGVKE---KARTAELLELFDLAE-HKDKPAGTYSTGMKKRLALAKALLHKPKLL 151
Cdd:PRK13631 121 VFQFP--EYQLfkdTIEKDIMFGPVALGVKKseaKKLAKFYLNKMGLDDsYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 152 YLDEPTNGLDPDGIKMVLSYLKKyNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK13631 199 IFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
26-188 |
1.41e-16 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 77.45 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 26 EGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIR-KLSGVVteSAGLYHQLSGQENLSFFadlygv 104
Cdd:cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKaDYEGTV--RDLLSSITKDFYTHPYF------ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 105 keKARTAELLELFDLAehkDKPAGTYSTGMKKRLALAkALLHKPKLLYL-DEPTNGLDPDGIKMVLSYLKKYNKETGTTI 183
Cdd:cd03237 96 --KTEIAKPLQIEQIL---DREVPELSGGELQRVAIA-ACLSKDADIYLlDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169
|
....*
gi 917220261 184 IICSH 188
Cdd:cd03237 170 FVVEH 174
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-161 |
2.65e-16 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 79.01 E-value: 2.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfghdpatsGDEIrKLSGVVTE 81
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI--------GETV-KLAYVDQS 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGL------YHQLS-GQENLsffaDLYGVKEKARTaeLLELF-----DlaehKDKPAGTYSTGMKKRLALAKALLHKPK 149
Cdd:PRK11819 396 RDALdpnktvWEEISgGLDII----KVGNREIPSRA--YVGRFnfkggD----QQKKVGVLSGGERNRLHLAKTLKQGGN 465
|
170
....*....|..
gi 917220261 150 LLYLDEPTNGLD 161
Cdd:PRK11819 466 VLLLDEPTNDLD 477
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
16-223 |
3.12e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 75.64 E-value: 3.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGV--IKPDSGEISIFGHDpatsgdeIRKLSgvVTESA--GLYhqLSG 91
Cdd:cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGED-------ITDLP--PEERArlGIF--LAF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENlsffADLYGVKekarTAELLElfDLAEhkdkpagTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSY 171
Cdd:cd03217 84 QYP----PEIPGVK----NADFLR--YVNE-------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEV 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 172 LKKYNKEtGTTIIICSH---VLHQLEPvcDSFAFLENRTIVEQGTVfELSDKYLK 223
Cdd:cd03217 147 INKLREE-GKSVLIITHyqrLLDYIKP--DRVHVLYDGRIVKSGDK-ELALEIEK 197
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-199 |
3.34e-16 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 78.71 E-value: 3.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDS--GEIsIFghdpatSGDEIRKLSGV 78
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEI-YW------SGSPLKASNIR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAG--LYHQ-LSGQENLSFFADLYGVKEKA-------------RTAELLELFDL-AEHKDKPAGTYSTGMKKRLALA 141
Cdd:TIGR02633 74 DTERAGivIIHQeLTLVPELSVAENIFLGNEITlpggrmaynamylRAKNLLRELQLdADNVTRPVGDYGGGQQQLVEIA 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 142 KALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDS 199
Cdd:TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYISHKLNEVKAVCDT 210
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
3-194 |
4.13e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 75.97 E-value: 4.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 3 NVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHdPATSGDE--IRKLSGVVT 80
Cdd:cd03248 16 NVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK-PISQYEHkyLHSKVSLVG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ESAGLYHQlSGQENLSF---FADLYGVKEKARTAELLELFDLAEHK-----DKPAGTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:cd03248 95 QEPVLFAR-SLQDNIAYglqSCSFECVKEAAQKAHAHSFISELASGydtevGEKGSQLSGGQKQRVAIARALIRNPQVLI 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 917220261 153 LDEPTNGLDPDGIKMVLSYLkkYNKETGTTIIICSHVLHQLE 194
Cdd:cd03248 174 LDEATSALDAESEQQVQQAL--YDWPERRTVLVIAHRLSTVE 213
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
6-199 |
5.19e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 78.03 E-value: 5.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 6 GASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFG--HDPATSGDEIrkLSGVVtesa 83
Cdd:PRK11288 9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGqeMRFASTTAAL--AAGVA---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 gLYHQ-------LSGQENLsFFADL---YGV--KEKARTAELLELFDLAEHKD--KPAGTYSTGMKKRLALAKALLHKPK 149
Cdd:PRK11288 83 -IIYQelhlvpeMTVAENL-YLGQLphkGGIvnRRLLNYEAREQLEHLGVDIDpdTPLKYLSIGQRQMVEIAKALARNAR 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 917220261 150 LLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDS 199
Cdd:PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDA 209
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
29-216 |
5.52e-16 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 77.22 E-value: 5.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 29 IIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEI------RKLsGVVTESAGLYHQLSGQENLsffadLY 102
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIclppekRRI-GYVFQDARLFPHYKVRGNL-----RY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 103 GVKEK--ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETG 180
Cdd:PRK11144 100 GMAKSmvAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN 179
|
170 180 190
....*....|....*....|....*....|....*.
gi 917220261 181 TTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFE 216
Cdd:PRK11144 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
13-187 |
5.60e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 78.12 E-value: 5.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 13 SHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD--PATSGDEIRklSGVVTESA-----GL 85
Cdd:PRK10762 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEvvTRSPQDGLA--NGIVYISEdrkrdGL 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 86 YHQLSGQENLS-----FFADLYGV----KEKARTAELLELFDL-AEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDE 155
Cdd:PRK10762 342 VLGMSVKENMSltalrYFSRAGGSlkhaDEQQAVSDFIRLFNIkTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE 421
|
170 180 190
....*....|....*....|....*....|..
gi 917220261 156 PTNGLDPDGIKMVLSYLKKYNKEtGTTIIICS 187
Cdd:PRK10762 422 PTRGVDVGAKKEIYQLINQFKAE-GLSIILVS 452
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
16-220 |
8.50e-16 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 77.84 E-value: 8.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGhDPATSGDE--IRKLSGVVTESAGLYHQlSGQE 93
Cdd:TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG-VPLVQYDHhyLHRQVALVGQEPVLFSG-SVRE 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 94 NLSFFADLYGVKEKARTAELLELFDLAEHKDK-------PAGTY-STGMKKRLALAKALLHKPKLLYLDEPTNGLDPDgi 165
Cdd:TIGR00958 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNgydtevgEKGSQlSGGQKQRIAIARALVRKPRVLILDEATSALDAE-- 651
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 166 kmVLSYLKKYNKETGTTIIICSHVLHQLEPvCDSFAFLENRTIVEQGTVFELSDK 220
Cdd:TIGR00958 652 --CEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED 703
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
14-215 |
8.90e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 75.69 E-value: 8.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGhdpatsgdeiRKLSGVVTESAGLYHQLSGQE 93
Cdd:PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG----------QPTRQALQKNLVAYVPQSEEV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 94 NLSF--------FADLYG---------VKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEP 156
Cdd:PRK15056 90 DWSFpvlvedvvMMGRYGhmgwlrrakKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 157 TNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDsfaflenRTIVEQGTVF 215
Cdd:PRK15056 170 FTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCD-------YTVMVKGTVL 220
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-188 |
1.32e-15 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 76.85 E-value: 1.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsifghdpatsgdeirKLSgvvtESA 83
Cdd:PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV---------------KWS----ENA 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 --GLYHQLSGQEnlsFFADL-----------YGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKL 150
Cdd:PRK15064 383 niGYYAQDHAYD---FENDLtlfdwmsqwrqEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV 459
|
170 180 190
....*....|....*....|....*....|....*...
gi 917220261 151 LYLDEPTNGLDPDGIKMVLSYLKKYnkeTGTTIIIcSH 188
Cdd:PRK15064 460 LVMDEPTNHMDMESIESLNMALEKY---EGTLIFV-SH 493
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-206 |
1.68e-15 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 76.75 E-value: 1.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 3 NVTgaSKSFGShsvLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD--PATSGDEIRKLSGVVT 80
Cdd:PRK09700 270 NVT--SRDRKK---VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDisPRSPLDAVKKGMAYIT 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 81 ES---AGLYHQLSGQENLSF--------FADLYGV---KEKARTAE-LLELFDLAEHK-DKPAGTYSTGMKKRLALAKAL 144
Cdd:PRK09700 345 ESrrdNGFFPNFSIAQNMAIsrslkdggYKGAMGLfheVDEQRTAEnQRELLALKCHSvNQNITELSGGNQQKVLISKWL 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 145 LHKPKLLYLDEPTNGLDPdGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFA-FLENR 206
Cdd:PRK09700 425 CCCPEVIIFDEPTRGIDV-GAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAvFCEGR 486
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
26-188 |
1.81e-15 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 76.39 E-value: 1.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 26 EGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfghdpatsgdEIrKLSgvvtesaglY--HQLSGQENLSFFADLYG 103
Cdd:PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP----------EL-KIS---------YkpQYIKPDYDGTVEDLLRS 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 104 VKEKART----AELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKET 179
Cdd:PRK13409 424 ITDDLGSsyykSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEER 503
|
....*....
gi 917220261 180 GTTIIICSH 188
Cdd:PRK13409 504 EATALVVDH 512
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
14-198 |
1.95e-15 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 72.85 E-value: 1.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD--PATSGDEIRKLSGVVTE---SAGLYHQ 88
Cdd:cd03215 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPvtRRSPRDAIRAGIAYVPEdrkREGLVLD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 LSGQENLSFfadlygvkekartAELLelfdlaehkdkpagtySTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMV 168
Cdd:cd03215 93 LSVAENIAL-------------SSLL----------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143
|
170 180 190
....*....|....*....|....*....|
gi 917220261 169 LSYLKKYNKEtGTTIIICSHVLHQLEPVCD 198
Cdd:cd03215 144 YRLIRELADA-GKAVLLISSELDELLGLCD 172
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
16-191 |
3.18e-15 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 73.31 E-value: 3.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsIFghdpatSGDEIRKLSGvvTESAGL---------- 85
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IF------NGQPMSKLSS--AAKAELrnqklgfiyq 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 86 YHQL----SGQENLSFFADLYGVK-----EKARtaELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEP 156
Cdd:PRK11629 95 FHHLlpdfTALENVAMPLLIGKKKpaeinSRAL--EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172
|
170 180 190
....*....|....*....|....*....|....*
gi 917220261 157 TNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLH 191
Cdd:PRK11629 173 TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
27-210 |
3.34e-15 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 75.98 E-value: 3.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 27 GRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH---------DPATS---------GD-EIRKLSGVVtesaglyH 87
Cdd:PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNwqlawvnqeTPALPqpaleyvidGDrEYRQLEAQL-------H 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGQENLSFFADLYGVKE-------KARTAELLELFDLA-EHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PRK10636 100 DANERNDGHAIATIHGKLDaidawtiRSRAASLLHGLGFSnEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNH 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 917220261 160 LDPDGIKMVLSYLKKYNketGTTIIIcSHVLHQLEPVCDSFAFLENRTIVE 210
Cdd:PRK10636 180 LDLDAVIWLEKWLKSYQ---GTLILI-SHDRDFLDPIVDKIIHIEQQSLFE 226
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
1-204 |
8.46e-15 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 74.95 E-value: 8.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTT----FIRILNgvikpDSGEISIFGhdpaTSGDEI---- 72
Cdd:TIGR01271 1219 DVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTllsaLLRLLS-----TEGEIQIDG----VSWNSVtlqt 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 73 -RKLSGVVTESAGLyhqLSG--QENLSFFADlYGVKEKARTAELLELFDLAEH-KDK-----PAGTY--STGMKKRLALA 141
Cdd:TIGR01271 1290 wRKAFGVIPQKVFI---FSGtfRKNLDPYEQ-WSDEEIWKVAEEVGLKSVIEQfPDKldfvlVDGGYvlSNGHKQLMCLA 1365
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 142 KALLHKPKLLYLDEPTNGLDPdgikMVLSYLKKYNKET--GTTIIICShvlHQLEPV--CDSFAFLE 204
Cdd:TIGR01271 1366 RSILSKAKILLLDEPSAHLDP----VTLQIIRKTLKQSfsNCTVILSE---HRVEALleCQQFLVIE 1425
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
11-213 |
9.34e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 72.51 E-value: 9.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 11 FGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRI---LNGVIKPDSGEISIFGH-----DPATSGDEIRKLSGVVTES 82
Cdd:PRK14243 20 YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrLNDLIPGFRVEGKVTFHgknlyAPDVDPVEVRRRIGMVFQK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 AGLYHQlSGQENLSFFADLYGVKekARTAELLE-------LFDLAEHKDKPAG-TYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:PRK14243 100 PNPFPK-SIYDNIAYGARINGYK--GDMDELVErslrqaaLWDEVKDKLKQSGlSLSGGQQQRLCIARAIAVQPEVILMD 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYNKEtgTTIIICSHVLHQLEPVCDSFAFLeNRTIVEQGT 213
Cdd:PRK14243 177 EPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFF-NVELTEGGG 232
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
8-188 |
1.21e-14 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 74.15 E-value: 1.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDS--GEISIFGHDPATsgdEIRKLSGVVTESAGL 85
Cdd:PLN03211 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTK---QILKRTGFVTQDDIL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 86 YHQLSGQENLSFFADL-----YGVKEKARTAE-LLELFDLAEHKDKPAGT-----YSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:PLN03211 152 YPHLTVRETLVFCSLLrlpksLTKQEKILVAEsVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILD 231
|
170 180 190
....*....|....*....|....*....|....*
gi 917220261 155 EPTNGLDPD-GIKMVLSYLKKYNKetGTTIIICSH 188
Cdd:PLN03211 232 EPTSGLDATaAYRLVLTLGSLAQK--GKTIVTSMH 264
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
19-231 |
1.40e-14 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 72.13 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 19 DVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH-------------------DPATSGDEIRKLSGVV 79
Cdd:PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHplhfgdysyrsqrirmifqDPSTSLNPRQRISQIL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESAGLYHQLSGQEnlsffadlygvKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PRK15112 111 DFPLRLNTDLEPEQ-----------REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALAS 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 917220261 160 LDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELSDKYLKDVKVRVLT 231
Cdd:PRK15112 180 LDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIA 251
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-213 |
1.41e-14 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 71.29 E-value: 1.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSH--SVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG-DEIRKLSGV 78
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPlEDLRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTESAGLyhqLSG--QENLSFFaDLYGvkekarTAELLELFDLAEHKDkpagTYSTGMKKRLALAKALLHKPKLLYLDEP 156
Cdd:cd03369 87 IPQDPTL---FSGtiRSNLDPF-DEYS------DEEIYGALRVSEGGL----NLSQGQRQLLCLARALLKRPRVLVLDEA 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 157 TNGLDPDGIKMVLSYLKKynKETGTTIIICSHVLHQLEPvCDSFAFLENRTIVEQGT 213
Cdd:cd03369 153 TASIDYATDALIQKTIRE--EFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
12-216 |
1.46e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 73.97 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTT----FIRILNGvikpdSGEISIFGH----------------------DP 65
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLINS-----QGEIWFDGQplhnlnrrqllpvrhriqvvfqDP 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 66 ATSGDEIRKLSGVVTESAGLYH-QLSGQEnlsffadlygvkEKARTAELLELFDL-AEHKDKPAGTYSTGMKKRLALAKA 143
Cdd:PRK15134 372 NSSLNPRLNVLQIIEEGLRVHQpTLSAAQ------------REQQVIAVMEEVGLdPETRHRYPAEFSGGQRQRIAIARA 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 144 LLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG---TVFE 216
Cdd:PRK15134 440 LILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGdceRVFA 515
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
17-198 |
2.74e-14 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 71.92 E-value: 2.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLS----GVVTESAglYHQLS-- 90
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLrqkiQIVFQNP--YGSLNpr 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 ---GQ---ENLSFFADLYGVKEKARTAELLELFDL-AEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPD 163
Cdd:PRK11308 109 kkvGQileEPLLINTSLSAAERREKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS 188
|
170 180 190
....*....|....*....|....*....|....*
gi 917220261 164 GIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCD 198
Cdd:PRK11308 189 VQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIAD 223
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
12-214 |
4.69e-14 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 71.04 E-value: 4.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTT----FIRILNgvikpDSGEISIFGHDPAT-SGDEIRKLSGVVTESAGLY 86
Cdd:cd03289 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTllsaFLRLLN-----TEGDIQIDGVSWNSvPLQKWRKAFGVIPQKVFIF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 87 hqlSG--QENLSFFA-----DLYGVKEKARTAELLELFDLAEHKDKPAGTY--STGMKKRLALAKALLHKPKLLYLDEPT 157
Cdd:cd03289 90 ---SGtfRKNLDPYGkwsdeEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCvlSHGHKQLMCLARSVLSKAKILLLDEPS 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 158 NGLDPDGIKMVLSYLKKynKETGTTIIICShvlHQLEPVCDSFAFLenrtIVEQGTV 214
Cdd:cd03289 167 AHLDPITYQVIRKTLKQ--AFADCTVILSE---HRIEAMLECQRFL----VIEENKV 214
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
7-185 |
5.18e-14 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 69.60 E-value: 5.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 7 ASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPD---SGEISIFGHDPATSGDEIRKLSGVVTESA 83
Cdd:cd03233 13 TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEIIYVSEED 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 GLYHQLSGQENLSFFADLYGvKEKARtaellelfdlaehkdkpagTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPD 163
Cdd:cd03233 93 VHFPTLTVRETLDFALRCKG-NEFVR-------------------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
|
170 180
....*....|....*....|..
gi 917220261 164 GIKMVLSYLKKYNKETGTTIII 185
Cdd:cd03233 153 TALEILKCIRTMADVLKTTTFV 174
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
19-161 |
9.23e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 71.24 E-value: 9.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 19 DVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVV-----TESAGLYHQLS--- 90
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylpedRQSSGLYLDAPlaw 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 -----GQENLSFFADlygvkeKARTAELLELFDLA-----EHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:PRK15439 361 nvcalTHNRRGFWIK------PARENAVLERYRRAlnikfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434
|
.
gi 917220261 161 D 161
Cdd:PRK15439 435 D 435
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
17-192 |
1.10e-13 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 68.42 E-value: 1.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRIL-----NGVIKpdsGEISIFGHDPatsGDEIRKLSGVVTESAGLYHQLSG 91
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLagrktAGVIT---GEILINGRPL---DKNFQRSTGYVEQQDVHSPNLTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENLSFFADLYGVkekartaellelfdlaehkdkpagtySTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSY 171
Cdd:cd03232 97 REALRFSALLRGL--------------------------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF 150
|
170 180
....*....|....*....|.
gi 917220261 172 LKKYnKETGTTiIICShvLHQ 192
Cdd:cd03232 151 LKKL-ADSGQA-ILCT--IHQ 167
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
16-195 |
1.35e-13 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 68.94 E-value: 1.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNG--VIKPDSGEISIFGHDpatsgdeIRKLSgvVTESA--GLYhqLSG 91
Cdd:COG0396 15 ILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGhpKYEVTSGSILLDGED-------ILELS--PDERAraGIF--LAF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 Q-----------------------ENLSFFADLYGVKEKArtaELLELFDlaEHKDKPA-GTYSTGMKKRLALAKALLHK 147
Cdd:COG0396 84 QypveipgvsvsnflrtalnarrgEELSAREFLKLLKEKM---KELGLDE--DFLDRYVnEGFSGGEKKRNEILQMLLLE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 917220261 148 PKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIIcSH---VLHQLEP 195
Cdd:COG0396 159 PKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILII-THyqrILDYIKP 208
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
2-209 |
1.85e-13 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 70.66 E-value: 1.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIR-----ILNGVIKpdsgEISIFGHDPATSGDEIRKLS 76
Cdd:PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRymamhAIDGIPK----NCQILHVEQEVVGDDTTALQ 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVT----------ESAGLYHQLSGQENLSFFADLYG-----VKEKARTAEL------LELFDL---------------- 119
Cdd:PLN03073 254 CVLNtdiertqlleEEAQLVAQQRELEFETETGKGKGankdgVDKDAVSQRLeeiykrLELIDAytaearaasilaglsf 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 120 -AEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKetgtTIIICSHVLHQLEPVCD 198
Cdd:PLN03073 334 tPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPK----TFIVVSHAREFLNTVVT 409
|
250
....*....|.
gi 917220261 199 SFAFLENRTIV 209
Cdd:PLN03073 410 DILHLHGQKLV 420
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
12-198 |
1.92e-13 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 69.75 E-value: 1.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGK--TTF--IRIL--NGVI--------------------KPDSGEISIFGHDP 65
Cdd:PRK09473 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKsqTAFalMGLLaaNGRIggsatfngreilnlpekelnKLRAEQISMIFQDP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 66 ATSGDEIRKLSGVVTESAGLYHQLSGQEnlsffadlyGVKEKARtaeLLELFDLAEHKdKPAGTY----STGMKKRLALA 141
Cdd:PRK09473 107 MTSLNPYMRVGEQLMEVLMLHKGMSKAE---------AFEESVR---MLDAVKMPEAR-KRMKMYphefSGGMRQRVMIA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 142 KALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCD 198
Cdd:PRK09473 174 MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICD 230
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
8-163 |
2.05e-13 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 70.58 E-value: 2.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfghdpatsgdeirklsgvvteSAGLYH 87
Cdd:PRK10636 319 SAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL---------------------AKGIKL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGQENLSFF-ADLYGVKEKARTAE-LLE------LFDLAEHKDK---PAGTYSTGMKKRLALAKALLHKPKLLYLDEP 156
Cdd:PRK10636 378 GYFAQHQLEFLrADESPLQHLARLAPqELEqklrdyLGGFGFQGDKvteETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457
|
....*..
gi 917220261 157 TNGLDPD 163
Cdd:PRK10636 458 TNHLDLD 464
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-188 |
2.07e-13 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 67.98 E-value: 2.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDE----IRKL 75
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRevpfLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 SGVVTESAGLYHQLSGQENLSF---FADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIpliIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160
|
170 180 190
....*....|....*....|....*....|....*.
gi 917220261 153 LDEPTNGLDPDGIKMVLSYLKKYNKeTGTTIIICSH 188
Cdd:PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATH 195
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
26-188 |
2.58e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.20 E-value: 2.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 26 EGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsifghdpatsgDEIRKLS----GVVTESAGLYHQLSGQENLSFFADL 101
Cdd:COG1245 365 EGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV-----------DEDLKISykpqYISPDYDGTVEEFLRSANTDDFGSS 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 102 YGvkekarTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGT 181
Cdd:COG1245 434 YY------KTEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGK 507
|
....*..
gi 917220261 182 TIIICSH 188
Cdd:COG1245 508 TAMVVDH 514
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
6-185 |
2.75e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 70.15 E-value: 2.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 6 GASKSFGSHS-VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsiFGHDPATSG--------DEIRKLS 76
Cdd:PRK11819 11 RVSKVVPPKKqILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA--RPAPGIKVGylpqepqlDPEKTVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 77 GVVTEsaGLYHQLSGQENLSFFADLYGVKEK------ARTAELLELFDLA-----EHK-------------DKPAGTYST 132
Cdd:PRK11819 89 ENVEE--GVAEVKAALDRFNEIYAAYAEPDAdfdalaAEQGELQEIIDAAdawdlDSQleiamdalrcppwDAKVTKLSG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 917220261 133 GMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYnkeTGTTIII 185
Cdd:PRK11819 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAV 216
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
25-161 |
2.85e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 69.81 E-value: 2.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 25 EEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEisifgHDPATSGDEIRKlsgvvtesaglyhQLSGQENLSFFADLY-- 102
Cdd:COG1245 97 KKGKVTGILGPNGIGKSTALKILSGELKPNLGD-----YDEEPSWDEVLK-------------RFRGTELQDYFKKLAng 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 103 ---------------------------GVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDE 155
Cdd:COG1245 159 eikvahkpqyvdlipkvfkgtvrelleKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238
|
....*.
gi 917220261 156 PTNGLD 161
Cdd:COG1245 239 PSSYLD 244
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
17-188 |
3.13e-13 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 69.62 E-value: 3.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGhDPATSGD--EIRKLSGVVTESAGLYHQLSGQEN 94
Cdd:PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG-KPVTAEQpeDYRKLFSAVFTDFHLFDQLLGPEG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 95 LSffadlygvKEKARTAELLELFDLaEHKDKPAG------TYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMV 168
Cdd:PRK10522 418 KP--------ANPALVEKWLERLKM-AHKLELEDgrisnlKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488
|
170 180
....*....|....*....|
gi 917220261 169 LSYLKKYNKETGTTIIICSH 188
Cdd:PRK10522 489 YQVLLPLLQEMGKTIFAISH 508
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
11-217 |
3.52e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 68.09 E-value: 3.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 11 FGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFG-HDPATSGDEIRKLSGVVTESAGLYHQL 89
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGeHIQHYASKEVARRIGLLAQNATTPGDI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 90 SGQENLS--------FFADLYGVKEKArTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:PRK10253 97 TVQELVArgryphqpLFTRWRKEDEEA-VTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 162 PDGIKMVLSYLKKYNKETGTTIiicSHVLHQLEPVC---DSFAFLENRTIVEQGTVFEL 217
Cdd:PRK10253 176 ISHQIDLLELLSELNREKGYTL---AAVLHDLNQACryaSHLIALREGKIVAQGAPKEI 231
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
25-161 |
3.83e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 69.45 E-value: 3.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 25 EEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEisifgHDPATSGDEIRKlsgvvtesaglyhQLSGQENLSFFADLY-- 102
Cdd:PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLGD-----YEEEPSWDEVLK-------------RFRGTELQNYFKKLYng 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 103 ---------------------------GVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDE 155
Cdd:PRK13409 159 eikvvhkpqyvdlipkvfkgkvrellkKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238
|
....*.
gi 917220261 156 PTNGLD 161
Cdd:PRK13409 239 PTSYLD 244
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
21-190 |
4.81e-13 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 67.30 E-value: 4.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 21 NFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVVTESaGLYHQLSGQENLSFFAD 100
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQEN-NLFSHLTVAQNIGLGLN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 101 LyGVK----EKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYN 176
Cdd:PRK10771 98 P-GLKlnaaQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176
|
170
....*....|....
gi 917220261 177 KETGTTIIICSHVL 190
Cdd:PRK10771 177 QERQLTLLMVSHSL 190
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
18-190 |
4.89e-13 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 68.58 E-value: 4.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 18 NDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGD----EIRK------------------L 75
Cdd:PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDdewrAVRSdiqmifqdplaslnprmtI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 SGVVTESAGLYH-QLSGQEnlsffadlygVKEKART----AELLE-LFDLAEHKdkpagtYSTGMKKRLALAKALLHKPK 149
Cdd:PRK15079 118 GEIIAEPLRTYHpKLSRQE----------VKDRVKAmmlkVGLLPnLINRYPHE------FSGGQCQRIGIARALILEPK 181
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 917220261 150 LLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVL 190
Cdd:PRK15079 182 LIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
5-254 |
5.17e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 68.99 E-value: 5.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 5 TGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSGDEIRKLSGVVTES 82
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKeiDFKSSKEALENGISMVHQE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 AGLYHQLSGQENL--------SFFADlyGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:PRK10982 82 LNLVLQRSVMDNMwlgryptkGMFVD--QDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFELS-DKYLKDVKVRVLTep 233
Cdd:PRK10982 160 EPTSSLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTmDKIIAMMVGRSLT-- 236
|
250 260
....*....|....*....|.
gi 917220261 234 amiQRdaasFPFDQLKPGEAV 254
Cdd:PRK10982 237 ---QR----FPDKENKPGEVI 250
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
17-217 |
9.01e-13 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 68.51 E-value: 9.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDpatsgdeIR--KLS------GVVTESAGLYHQ 88
Cdd:PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD-------LRdyTLAslrnqvALVSQNVHLFND 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 lSGQENLSFFA-DLYGVKEKARTAELLELFDLAEHKDKPAGT--------YSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PRK11176 432 -TIANNIAYARtEQYSREQIEEAARMAYAMDFINKMDNGLDTvigengvlLSGGQRQRIAIARALLRDSPILILDEATSA 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 160 LDPD---GIKMVLSYLKKyNKetgtTIIICSHVLHQLEPVcDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK11176 511 LDTEserAIQAALDELQK-NR----TSLVIAHRLSTIEKA-DEILVVEDGEIVERGTHAEL 565
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
17-188 |
1.02e-12 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 66.40 E-value: 1.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIkPDSGEISIfghdpatSGDEIRKLSGvvtesAGLYHQ---LSGQE 93
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILL-------NGRPLSDWSA-----AELARHrayLSQQQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 94 NLSFFADLY----------GVKEKART--AELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLH-------KPKLLYLD 154
Cdd:COG4138 79 SPPFAMPVFqylalhqpagASSEAVEQllAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLD 158
|
170 180 190
....*....|....*....|....*....|....
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSH 188
Cdd:COG4138 159 EPMNSLDVAQQAALDRLLREL-CQQGITVVMSSH 191
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
16-217 |
3.33e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 67.31 E-value: 3.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG-DEIRKLSGVVTESAGLYhqlSG--Q 92
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGlTDLRRVLSIIPQSPVLF---SGtvR 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLSFF-----ADLYGVKEKARTAELLEL--FDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGI 165
Cdd:PLN03232 1328 FNIDPFsehndADLWEALERAHIKDVIDRnpFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 917220261 166 KMVLSYLKKYNKEtgTTIIICSHVLHQLEPvCDSFAFLENRTIVEQGTVFEL 217
Cdd:PLN03232 1408 SLIQRTIREEFKS--CTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
13-188 |
3.64e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 63.33 E-value: 3.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 13 SHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfghdPATSGdeirklsgvvtesaglyhqlsgq 92
Cdd:cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM----PEGED----------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 enlSFFadlygvkekartaellelfdLAEHKDKPAGT------Y------STGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:cd03223 66 ---LLF--------------------LPQRPYLPLGTlreqliYpwddvlSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122
|
170 180
....*....|....*....|....*...
gi 917220261 161 DPDGIKMVLSYLKKYnketGTTIIICSH 188
Cdd:cd03223 123 DEESEDRLYQLLKEL----GITVISVGH 146
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
7-188 |
3.92e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 66.51 E-value: 3.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 7 ASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSG--------EISIFGH-----DP-ATSGDEI 72
Cdd:PRK11147 325 VNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGrihcgtklEVAYFDQhraelDPeKTVMDNL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 73 RKLSGVVTesaglyhqLSGQEN--LSFFADLYGVKEKARTaellelfdlaehkdkPAGTYSTGMKKRLALAKALLHKPKL 150
Cdd:PRK11147 405 AEGKQEVM--------VNGRPRhvLGYLQDFLFHPKRAMT---------------PVKALSGGERNRLLLARLFLKPSNL 461
|
170 180 190
....*....|....*....|....*....|....*...
gi 917220261 151 LYLDEPTNGLDPDGIKMVLSYLKKYnkeTGTTIIIcSH 188
Cdd:PRK11147 462 LILDEPTNDLDVETLELLEELLDSY---QGTVLLV-SH 495
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
17-233 |
4.60e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 65.11 E-value: 4.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVVTESAGlyHQLSG---Q 92
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELlTAENVWNLRRKIGMVFQNPD--NQFVGatvE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLSFFADLYGVKEK---ARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVL 169
Cdd:PRK13642 101 DDVAFGMENQGIPREemiKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 170 SYLKKYNKETGTTIIICSHVLHQ---------------LEPVCDSFAFLENRTIVEQGTVFELSDKYLKDVKVRVLTEP 233
Cdd:PRK13642 181 RVIHEIKEKYQLTVLSITHDLDEaassdrilvmkageiIKEAAPSELFATSEDMVEIGLDVPFSSNLMKDLRKNGFDLP 259
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
20-155 |
5.62e-12 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 65.97 E-value: 5.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 20 VNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKL-SGVVTEsaglYHQlsgqenlsf 97
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPvTADNREAYRQLfSAVFSD----FHL--------- 417
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 917220261 98 FADLYGVKEK---ARTAELLELFDLaEHKDKPAGT------YSTGMKKRLALAKALL-HKPKLLyLDE 155
Cdd:COG4615 418 FDRLLGLDGEadpARARELLERLEL-DHKVSVEDGrfsttdLSQGQRKRLALLVALLeDRPILV-FDE 483
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-217 |
5.71e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 64.73 E-value: 5.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 11 FGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGeiSIFGHDPATSGDEIRKLSGVVT--ESAGLYHQ 88
Cdd:PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG--YRYSGDVLLGGRSIFNYRDVLEfrRRVGMLFQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 LSGQENLSFFAD-LYGVKE-------------KARTAELlELFDLAEHK--DKPAgTYSTGMKKRLALAKALLHKPKLLY 152
Cdd:PRK14271 109 RPNPFPMSIMDNvLAGVRAhklvprkefrgvaQARLTEV-GLWDAVKDRlsDSPF-RLSGGQQQLLCLARTLAVNPEVLL 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 153 LDEPTNGLDPDGIKMVLSYLKKYNKEtgTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK14271 187 LDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-198 |
7.44e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 65.41 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 4 VTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGVvtesa 83
Cdd:PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI----- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 GLYHQ-------LSGQENLsF----FADLYGV----KEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKP 148
Cdd:PRK10762 82 GIIHQelnlipqLTIAENI-FlgreFVNRFGRidwkKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 917220261 149 KLLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCD 198
Cdd:PRK10762 161 KVIIMDEPTDALTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICD 209
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
8-205 |
2.28e-11 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 62.10 E-value: 2.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 8 SKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDpatsgdeirklsGVVTESAGLyh 87
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI------------AYVSQEPWI-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 qLSG--QENLSFFADLYgvKEKARTA----------ELLELFDLAEHKDKpaG-TYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:cd03250 78 -QNGtiRENILFGKPFD--EERYEKVikacalepdlEILPDGDLTEIGEK--GiNLSGGQKQRISLARAVYSDADIYLLD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 155 EPTNGLDPD---GI--KMVLSYLKKynketGTTIIICSHVLHQLEPvCDSFAFLEN 205
Cdd:cd03250 153 DPLSAVDAHvgrHIfeNCILGLLLN-----NKTRILVTHQLQLLPH-ADQIVVLDN 202
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
27-217 |
2.41e-11 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 62.88 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 27 GRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD--------------------PATSGDEIRKLSGVvtesaGLY 86
Cdd:PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPleswsskafarkvaylpqqlPAAEGMTVRELVAI-----GRY 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 87 --HQLSGQenlsffadlYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDG 164
Cdd:PRK10575 112 pwHGALGR---------FGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 917220261 165 IKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK10575 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
10-198 |
3.00e-11 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 63.88 E-value: 3.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 10 SFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGvikpD-----SGEISIFGHDPAtSGD---EIRKLSGVVTE 81
Cdd:PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG----DhpqgySNDLTLFGRRRG-SGEtiwDIKKHIGYVSS 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQEN---LSFFADLYGV------KEKARTAELLELFDLAEHK-DKPAGTYSTGmKKRLAL-AKALLHKPKL 150
Cdd:PRK10938 344 SLHLDYRVSTSVRnviLSGFFDSIGIyqavsdRQQKLAQQWLDILGIDKRTaDAPFHSLSWG-QQRLALiVRALVKHPTL 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 151 LYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSH--------VLHQLEPVCD 198
Cdd:PRK10938 423 LILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHhaedapacITHRLEFVPD 478
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
9-216 |
4.39e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 63.16 E-value: 4.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 9 KSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIkPDSGEISIFGHDPAT-SGDEIRKL------------ 75
Cdd:COG4172 294 RTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGlSRRALRPLrrrmqvvfqdpf 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 76 ---------SGVVTEsaGLY-HQ--LSGQEnlsffadlygvkEKARTAELLELFDL-AEHKDKPAGTYSTGMKKRLALAK 142
Cdd:COG4172 373 gslsprmtvGQIIAE--GLRvHGpgLSAAE------------RRARVAEALEEVGLdPAARHRYPHEFSGGQRQRIAIAR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 143 ALLHKPKLLYLDEPTNGLDpdgikM-----VLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG---TV 214
Cdd:COG4172 439 ALILEPKLLVLDEPTSALD-----VsvqaqILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGpteQV 513
|
..
gi 917220261 215 FE 216
Cdd:COG4172 514 FD 515
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
13-218 |
5.90e-11 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 62.81 E-value: 5.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 13 SHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLSGVVTESAGLYHQlSG 91
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPlTKLQLDSWRSRLAVVSQTPFLFSD-TV 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QENLSF---FADLYGVKEKARTAELLE-LFDLAEHKDKPAG----TYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPD 163
Cdd:PRK10789 406 ANNIALgrpDATQQEIEHVARLASVHDdILRLPQGYDTEVGergvMLSGGQKQRISIARALLLNAEILILDDALSAVDGR 485
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 164 GIKMVLSYLKKYNKetGTTIIICSHVLHQLEPVcDSFAFLENRTIVEQGTVFELS 218
Cdd:PRK10789 486 TEHQILHNLRQWGE--GRTVIISAHRLSALTEA-SEILVMQHGHIAQRGNHDQLA 537
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
34-188 |
2.60e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 58.73 E-value: 2.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 34 GPNGAGKTTFIRILNGVIKPDSGEISIfgHDPATsgDEIRKL-SGVVTESAGLYHQLSGQENLSFFADLYGVKEKARTAe 112
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYY--KNCNI--NNIAKPyCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAA- 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 113 lLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMvLSYLKKYNKETGTTIIICSH 188
Cdd:PRK13541 108 -IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDL-LNNLIVMKANSGGIVLLSSH 181
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-198 |
2.71e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 60.99 E-value: 2.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPD-SGEISIFGHDPATSG------------DEIRKLSGVVTESA 83
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNpaqairagiamvPEDRKRHGIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 -GLYHQLSGQENLSFFADLYGVKE-KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:TIGR02633 356 vGKNITLSVLKSFCFKMRIDAAAElQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
|
170 180 190
....*....|....*....|....*....|....*..
gi 917220261 162 PdGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCD 198
Cdd:TIGR02633 436 V-GAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD 471
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
16-204 |
3.00e-10 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 61.02 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRIL-----NGVIKpdsGEISIFGHdpATSGDEIRKLSGVVTESAGLYHQLS 90
Cdd:PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLagrktGGYIE---GDIRISGF--PKKQETFARISGYCEQNDIHSPQVT 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 GQENLSFFADLYGVKEKAR------TAELLELFDLAEHKDKPAGT-----YSTGMKKRLALAKALLHKPKLLYLDEPTNG 159
Cdd:PLN03140 970 VRESLIYSAFLRLPKEVSKeekmmfVDEVMELVELDNLKDAIVGLpgvtgLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1049
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 917220261 160 LDPDGIKMVLSYLKKyNKETGTTiIICShvLHQlePVCDSF-AFLE 204
Cdd:PLN03140 1050 LDARAAAIVMRTVRN-TVDTGRT-VVCT--IHQ--PSIDIFeAFDE 1089
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
16-192 |
3.09e-10 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 61.28 E-value: 3.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGviKPDSGEIsifghdpaTSGDEI---RKLSGVVTESAGLYHQ---- 88
Cdd:TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTGVI--------TGGDRLvngRPLDSSFQRSIGYVQQqdlh 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 89 ---LSGQENLSFFADL-----YGVKEKARTAE-LLELFDLAEHKDKPAGTYSTGM----KKRLALAKALLHKPKLL-YLD 154
Cdd:TIGR00956 848 lptSTVRESLRFSAYLrqpksVSKSEKMEYVEeVIKLLEMESYADAVVGVPGEGLnveqRKRLTIGVELVAKPKLLlFLD 927
|
170 180 190
....*....|....*....|....*....|....*...
gi 917220261 155 EPTNGLDPDGIKMVLSYLKKYNKeTGTTiIICShvLHQ 192
Cdd:TIGR00956 928 EPTSGLDSQTAWSICKLMRKLAD-HGQA-ILCT--IHQ 961
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-213 |
3.19e-10 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 60.89 E-value: 3.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 2 INVTGASKSFGS-HSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHdPATSgdeirkLS-GVV 79
Cdd:PRK10790 341 IDIDNVSFAYRDdNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR-PLSS------LShSVL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESAGLYHQ----LSGqenlSFFADLYGVKE--KARTAELLELFDLAE-HKDKPAGTY----------STGMKKRLALAK 142
Cdd:PRK10790 414 RQGVAMVQQdpvvLAD----TFLANVTLGRDisEEQVWQALETVQLAElARSLPDGLYtplgeqgnnlSVGQKQLLALAR 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917220261 143 ALLHKPKLLYLDEPTNGLDP---DGIKMVLSYLKKYnketgTTIIICSHVLHQLEPVcDSFAFLENRTIVEQGT 213
Cdd:PRK10790 490 VLVQTPQILILDEATANIDSgteQAIQQALAAVREH-----TTLVVIAHRLSTIVEA-DTILVLHRGQAVEQGT 557
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
10-214 |
3.82e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 59.27 E-value: 3.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 10 SFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGviKPD----SGEISIFGHDPATSGDEIRKLSGVVtesagL 85
Cdd:CHL00131 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAykilEGDILFKGESILDLEPEERAHLGIF-----L 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 86 YHQ----LSGQENLSFFADLYGVKEKART---AELLELFDLAEHKDKPAGT------------YSTGMKKRLALAKALLH 146
Cdd:CHL00131 89 AFQypieIPGVSNADFLRLAYNSKRKFQGlpeLDPLEFLEIINEKLKLVGMdpsflsrnvnegFSGGEKKRNEILQMALL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 147 KPKLLYLDEPTNGLDPDGIKMVLSYLKKYnKETGTTIIICSHVLHQLEPVCDSFA-FLENRTIVEQGTV 214
Cdd:CHL00131 169 DSELAILDETDSGLDIDALKIIAEGINKL-MTSENSIILITHYQRLLDYIKPDYVhVMQNGKIIKTGDA 236
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
16-217 |
4.49e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 60.52 E-value: 4.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG-DEIRKLSGVVTESAGLYhqlSG--Q 92
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGlMDLRKVLGIIPQAPVLF---SGtvR 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLSFF-----ADLYGVKEKARTAELL---------ELFDLAEHkdkpagtYSTGMKKRLALAKALLHKPKLLYLDEPTN 158
Cdd:PLN03130 1331 FNLDPFnehndADLWESLERAHLKDVIrrnslgldaEVSEAGEN-------FSVGQRQLLSLARALLRRSKILVLDEATA 1403
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 159 GLD--PDGIkmvlsyLKKYNKE---TGTTIIICshvlHQLEPV--CDSFAFLENRTIVEQGTVFEL 217
Cdd:PLN03130 1404 AVDvrTDAL------IQKTIREefkSCTMLIIA----HRLNTIidCDRILVLDAGRVVEFDTPENL 1459
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
16-161 |
8.43e-10 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 59.74 E-value: 8.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVI----KPDSGEISIFGHDPatsgDEIRK-LSGVVTESAGL---YH 87
Cdd:TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTdgfhIGVEGVITYDGITP----EEIKKhYRGDVVYNAETdvhFP 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGQENLSFFADLY-------GVKEKARTAELLEL----FDLAEHKDKPAGT-----YSTGMKKRLALAKALLHKPKLL 151
Cdd:TIGR00956 152 HLTVGETLDFAARCKtpqnrpdGVSREEYAKHIADVymatYGLSHTRNTKVGNdfvrgVSGGERKRVSIAEASLGGAKIQ 231
|
170
....*....|
gi 917220261 152 YLDEPTNGLD 161
Cdd:TIGR00956 232 CWDNATRGLD 241
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
12-217 |
1.21e-09 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 58.38 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 12 GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPD---------------------------SGEISIFGHD 64
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtadrfrwngidllklsprerrkiiGREIAMIFQE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 65 PATSGDEIRKLsGVVTESAGLYHQLSGqenlsFFADLYGVKeKARTAELLELFDLAEHKDKPAgTY----STGMKKRLAL 140
Cdd:COG4170 98 PSSCLDPSAKI-GDQLIEAIPSWTFKG-----KWWQRFKWR-KKRAIELLHRVGIKDHKDIMN-SYphelTEGECQKVMI 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 141 AKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:COG4170 170 AMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQI 246
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
16-188 |
1.64e-09 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 58.67 E-value: 1.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRiiGLL--GPNGAGKTTFIRILNGVIKPDSGEISIfghdPAtsGDEI-----R------KLSGVVtes 82
Cdd:COG4178 378 LLEDLSLSLKPGE--RLLitGPSGSGKSTLLRAIAGLWPYGSGRIAR----PA--GARVlflpqRpylplgTLREAL--- 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 agLYHQLSGQENLsffADLYGVKEKARTAELLELFDLAEHKDKpagTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDP 162
Cdd:COG4178 447 --LYPATAEAFSD---AELREALEAVGLGHLAERLDEEADWDQ---VLSLGEQQRLAFARLLLHKPDWLFLDEATSALDE 518
|
170 180
....*....|....*....|....*.
gi 917220261 163 DGIKMVLSYLKKynKETGTTIIICSH 188
Cdd:COG4178 519 ENEAALYQLLRE--ELPGTTVISVGH 542
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
54-188 |
2.22e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 58.50 E-value: 2.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 54 DSGEISIFGHDPATSG-DEIRKLSGVVTESAGLYHqLSGQENLSFF---ADLYGVKEKARTAELLELFD-LAEHKDKPAG 128
Cdd:PTZ00265 1275 NSGKILLDGVDICDYNlKDLRNLFSIVSQEPMLFN-MSIYENIKFGkedATREDVKRACKFAAIDEFIEsLPNKYDTNVG 1353
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917220261 129 TY----STGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSH 188
Cdd:PTZ00265 1354 PYgkslSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1-213 |
2.49e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 57.72 E-value: 2.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGE-ISIFGHDPATSGDEIRKLsgvV 79
Cdd:PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGErQSQFSHITRLSFEQLQKL---V 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESaglyHQLSGQENLSFFAD----------LYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPK 149
Cdd:PRK10938 80 SDE----WQRNNTDMLSPGEDdtgrttaeiiQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPD 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917220261 150 LLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT 213
Cdd:PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGE 218
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
1-172 |
4.91e-09 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 57.18 E-value: 4.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGeiSIFghdpatsgdeirkLSGVV 79
Cdd:PLN03073 508 IISFSDASFGYpGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG--TVF-------------RSAKV 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 TESAGLYHQLSGQEnLSFFADLY------GVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYL 153
Cdd:PLN03073 573 RMAVFSQHHVDGLD-LSSNPLLYmmrcfpGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651
|
170
....*....|....*....
gi 917220261 154 DEPTNGLDPDGIKMVLSYL 172
Cdd:PLN03073 652 DEPSNHLDLDAVEALIQGL 670
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
16-161 |
5.11e-09 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 56.96 E-value: 5.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHD-PATSGDEIRKLsGV---------------- 78
Cdd:COG3845 273 ALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDiTGLSPRERRRL-GVayipedrlgrglvpdm 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 -VTESAGLYHQLSGQENLSFFADLYGVKEKARtaELLELFDL-AEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEP 156
Cdd:COG3845 352 sVAENLILGRYRRPPFSRGGFLDRKAIRAFAE--ELIEEFDVrTPGPDTPARSLSGGNQQKVILARELSRDPKLLIAAQP 429
|
....*
gi 917220261 157 TNGLD 161
Cdd:COG3845 430 TRGLD 434
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
107-217 |
9.97e-09 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 55.58 E-value: 9.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 107 KARTAELLELFDLAEHKDKpAGTY----STGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTT 182
Cdd:PRK15093 133 KRRAIELLHRVGIKDHKDA-MRSFpyelTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTT 211
|
90 100 110
....*....|....*....|....*....|....*
gi 917220261 183 IIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK15093 212 ILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
20-194 |
1.23e-08 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 54.55 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 20 VNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIkPDSGEISIFGHDpatsgdeIRKLSGvvtesAGLYHQ---LSGQENLS 96
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQP-------LEAWSA-----AELARHrayLSQQQTPP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 97 F------FADLYgVKEKARTA-------ELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLH-----KP--KLLYLDEP 156
Cdd:PRK03695 82 FampvfqYLTLH-QPDKTRTEavasalnEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdiNPagQLLLLDEP 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 917220261 157 TNGLDPdGIKMVLSYLKKYNKETGTTIIICSHVL-HQLE 194
Cdd:PRK03695 161 MNSLDV-AQQAALDRLLSELCQQGIAVVMSSHDLnHTLR 198
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-194 |
2.40e-08 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 54.46 E-value: 2.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSF-GSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIfghdpatsGDEirklsgVV 79
Cdd:PRK11650 3 GLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI--------GGR------VV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 80 T--ESA-----------GLYHQLSGQENLSffadlYGVK----EKA-------RTAELLELFDLAEHkdKPAgTYSTGMK 135
Cdd:PRK11650 69 NelEPAdrdiamvfqnyALYPHMSVRENMA-----YGLKirgmPKAeieervaEAARILELEPLLDR--KPR-ELSGGQR 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 136 KRLALAKALLHKPKLLYLDEPTNGLDPD-GIKMVLSyLKKYNKETGTTIIicsHVLH-QLE 194
Cdd:PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKlRVQMRLE-IQRLHRRLKTTSL---YVTHdQVE 197
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
27-195 |
2.72e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.99 E-value: 2.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 27 GRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFghdpatSGDEIRklsgvvtesaglyhqlsgqenlsffadlygvke 106
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYI------DGEDIL--------------------------------- 42
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 107 kartaELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSY-----LKKYNKETGT 181
Cdd:smart00382 43 -----EEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNL 117
|
170
....*....|....
gi 917220261 182 TIIICSHVLHQLEP 195
Cdd:smart00382 118 TVILTTNDEKDLGP 131
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
34-188 |
3.54e-08 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 52.61 E-value: 3.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 34 GPNGAGKTTFIrilngvikpDSGEISIFGHDPATS--GDEIRKLSGVVTESAGLYHQlsgqenlsfFADLYGVKEKARTA 111
Cdd:cd03240 29 GQNGAGKTTII---------EALKYALTGELPPNSkgGAHDPKLIREGEVRAQVKLA---------FENANGKKYTITRS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 112 elLELFDLA-----EHKDKPA----GTYSTGMKK------RLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYL-KKY 175
Cdd:cd03240 91 --LAILENVifchqGESNWPLldmrGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIiEER 168
|
170
....*....|...
gi 917220261 176 NKETGTTIIICSH 188
Cdd:cd03240 169 KSQKNFQLIVITH 181
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
17-222 |
3.90e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 54.35 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 17 LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSGDEIRKLSGVVTE---SAGLYHQLSG 91
Cdd:PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKkiNNHNANEAINHGFALVTEerrSTGIYAYLDI 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 92 QEN---------LSFFADLYGVKEKARTAELLELFDLAEHKDKPA-GTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:PRK10982 344 GFNslisnirnyKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQiGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 917220261 162 PDG---IKMVLSYLKKYNKetgtTIIICSHVLHQLEPVCDSFAFLEN---RTIVE-----QGTVFELSDKYL 222
Cdd:PRK10982 424 VGAkfeIYQLIAELAKKDK----GIIIISSEMPELLGITDRILVMSNglvAGIVDtktttQNEILRLASLHL 491
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
25-77 |
4.19e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 52.19 E-value: 4.19e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 917220261 25 EEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIrKLSG 77
Cdd:cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYI-DLSG 74
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
10-217 |
4.83e-08 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 53.92 E-value: 4.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 10 SFGSHS----VLNDVNFKAEEGRIIGLLGPNGAGKT-TFIRIL----NGVIKPdSGEISIFGHD-PATSGDEIRKLSGV- 78
Cdd:COG4172 15 AFGQGGgtveAVKGVSFDIAAGETLALVGESGSGKSvTALSILrllpDPAAHP-SGSILFDGQDlLGLSERELRRIRGNr 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 ---------------------VTESAGLYHQLSGQEnlsffadlygvkEKARTAELLELFDLAEHKdKPAGTY----STG 133
Cdd:COG4172 94 iamifqepmtslnplhtigkqIAEVLRLHRGLSGAA------------ARARALELLERVGIPDPE-RRLDAYphqlSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 134 MKKRLALAKALLHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGT 213
Cdd:COG4172 161 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGP 240
|
....
gi 917220261 214 VFEL 217
Cdd:COG4172 241 TAEL 244
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
14-216 |
5.13e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 54.09 E-value: 5.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNdVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsIFGhdpatsGDEIRKLSGVVTES---------AG 84
Cdd:PRK10261 338 HAVEK-VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI-IFN------GQRIDTLSPGKLQAlrrdiqfifQD 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 85 LYHQL--------SGQENLSFFADLYGVKEKARTAELLELFDL-AEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDE 155
Cdd:PRK10261 410 PYASLdprqtvgdSIMEPLRVHGLLPGKAAAARVAWLLERVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917220261 156 PTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQG---TVFE 216
Cdd:PRK10261 490 AVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGprrAVFE 553
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
18-161 |
5.24e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 53.76 E-value: 5.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 18 NDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGH--DPATSGDEIRklSGVV-----TESAGLYHQLS 90
Cdd:PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKpiDIRSPRDAIR--AGIMlcpedRKAEGIIPVHS 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 GQENLS-----FFADLYGVKEKARTAELLELF--DLA---EHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:PRK11288 348 VADNINisarrHHLRAGCLINNRWEAENADRFirSLNiktPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427
|
.
gi 917220261 161 D 161
Cdd:PRK11288 428 D 428
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
16-161 |
5.39e-08 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 52.94 E-value: 5.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsifghdpatsgdeirKLSGVVTESAGLYHQLSG--QE 93
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI---------------KHSGRISFSSQFSWIMPGtiKE 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 94 NLSFFA--DLYGVKEKARTAELLE-LFDLAEHKDKPAG----TYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:cd03291 117 NIIFGVsyDEYRYKSVVKACQLEEdITKFPEKDNTVLGeggiTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
16-161 |
6.64e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 53.39 E-value: 6.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDS-GEISIFGH-----DPATSGD-------EIRKLSGVVTE- 81
Cdd:PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWeGEIFIDGKpvkirNPQQAIAqgiamvpEDRKRDGIVPVm 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 SAGLYHQLSGQENLSFFADLYGVKE-KARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGL 160
Cdd:PRK13549 357 GVGKNITLAALDRFTGGSRIDDAAElKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436
|
.
gi 917220261 161 D 161
Cdd:PRK13549 437 D 437
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
13-214 |
8.08e-08 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 52.52 E-value: 8.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 13 SHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPD--------SGEISIFGhDPATSGDEIR--KLSGVVTES 82
Cdd:PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNG-EPLAAIDAPRlaRLRAVLPQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 83 AglyhqlsgQENLSFFAD---LYGVKEKARTA------------ELLELFDLAEHKDKPAGTYSTGMKKRLALAKAL--L 145
Cdd:PRK13547 92 A--------QPAFAFSAReivLLGRYPHARRAgalthrdgeiawQALALAGATALVGRDVTTLSGGELARVQFARVLaqL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 146 HK-------PKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTV 214
Cdd:PRK13547 164 WPphdaaqpPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
16-161 |
8.40e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 53.76 E-value: 8.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIsifghdpatsgdeirKLSGVVTESAGLYHQLSG--QE 93
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI---------------KHSGRISFSPQTSWIMPGtiKD 505
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 94 NLSF--FADLYGVKEKARTAELLELFDLAEHKDK-PAG----TYSTGMKKRLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:TIGR01271 506 NIIFglSYDEYRYTSVIKACQLEEDIALFPEKDKtVLGeggiTLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
14-217 |
8.46e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 53.17 E-value: 8.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 14 HSVLNDVNFKAEEGRIIGLLGPNGAGKT----TFIRILNG--VIKPdSGEISIFGHDPA-TSGDEIRKLSG-----VVTE 81
Cdd:PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSppVVYP-SGDIRFHGESLLhASEQTLRGVRGnkiamIFQE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 82 ---SAGLYHQLSGQ--ENLSFFAdlyGVKEKARTAELLELFD----------LAEHKDKPAGtystGMKKRLALAKALLH 146
Cdd:PRK15134 101 pmvSLNPLHTLEKQlyEVLSLHR---GMRREAARGEILNCLDrvgirqaakrLTDYPHQLSG----GERQRVMIAMALLT 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917220261 147 KPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK15134 174 RPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
16-188 |
4.12e-07 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 51.29 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGV--------IKPDSGEISIFGHDP----ATSGDEIrklsgvvtesa 83
Cdd:TIGR00954 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELwpvyggrlTKPAKGKLFYVPQRPymtlGTLRDQI----------- 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 84 gLYHQLSGQenlsFFADLYGVKEKARTAELLELFDLAEH----------KDKPAGtystGMKKRLALAKALLHKPKLLYL 153
Cdd:TIGR00954 536 -IYPDSSED----MKRRGLSDKDLEQILDNVQLTHILEReggwsavqdwMDVLSG----GEKQRIAMARLFYHKPQFAIL 606
|
170 180 190
....*....|....*....|....*....|....*
gi 917220261 154 DEPTNGLDPDgikmVLSYLKKYNKETGTTIIICSH 188
Cdd:TIGR00954 607 DECTSAVSVD----VEGYMYRLCREFGITLFSVSH 637
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
16-216 |
6.33e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 50.71 E-value: 6.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG-DEIRKLSGVVTESAGLYhqlSG--Q 92
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGlHDLRFKITIIPQDPVLF---SGslR 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLSFFADlYGVKEKARTAELLELFDLA-------EHKDKPAG-TYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDG 164
Cdd:TIGR00957 1378 MNLDPFSQ-YSDEEVWWALELAHLKTFVsalpdklDHECAEGGeNLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 917220261 165 IKMVLSYLKKyNKETGTTIIICshvlHQLEPVCDSfafleNRTIV-EQGTVFE 216
Cdd:TIGR00957 1457 DNLIQSTIRT-QFEDCTVLTIA----HRLNTIMDY-----TRVIVlDKGEVAE 1499
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
25-161 |
7.88e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 49.29 E-value: 7.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 25 EEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEisifgHDPATSGDEIRKlsgvvtesaglyhQLSGQENLSFFADLYGV 104
Cdd:cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGK-----FDDPPDWDEILD-------------EFRGSELQNYFTKLLEG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 105 KEKA----------------RTAELLELFDLAEHKDKPAGT-------------YSTGMKKRLALAKALLHKPKLLYLDE 155
Cdd:cd03236 86 DVKVivkpqyvdlipkavkgKVGELLKKKDERGKLDELVDQlelrhvldrnidqLSGGELQRVAIAAALARDADFYFFDE 165
|
....*.
gi 917220261 156 PTNGLD 161
Cdd:cd03236 166 PSSYLD 171
|
|
| PRK15177 |
PRK15177 |
Vi polysaccharide ABC transporter ATP-binding protein VexC; |
16-154 |
2.71e-06 |
|
Vi polysaccharide ABC transporter ATP-binding protein VexC;
Pssm-ID: 185099 [Multi-domain] Cd Length: 213 Bit Score: 47.36 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSGDEIRKLSGvvtesaglyhqLSGQENL 95
Cdd:PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPG-----------LTGEENA 70
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 917220261 96 SFFADLYGVKEKARTAELLELFDLAEHKDKPAGTYSTGMKKRLALAKALLHKPKLLYLD 154
Cdd:PRK15177 71 RMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD 129
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
13-218 |
3.78e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 48.43 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 13 SHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPdsgeisifghdPATSGDEIRKLSGVVTESAGLYHQlSGQ 92
Cdd:PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----------AETSSVVIRGSVAYVPQVSWIFNA-TVR 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 93 ENLSFFADlYGVKEKARTAEL------LELF---DLAEHKDKPAGTySTGMKKRLALAKALLHKPKLLYLDEPTNGLDPD 163
Cdd:PLN03232 697 ENILFGSD-FESERYWRAIDVtalqhdLDLLpgrDLTEIGERGVNI-SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAH 774
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 917220261 164 GIKMVLSYLKKYNKEtGTTIIICSHVLHQLePVCDSFAFLENRTIVEQGTVFELS 218
Cdd:PLN03232 775 VAHQVFDSCMKDELK-GKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEGTFAELS 827
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-168 |
8.51e-06 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 46.32 E-value: 8.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGV--IKPDSGEISIFGHDPATSGDEIRKLSGV 78
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 79 VTesAGLYH-QLSGQENLSFFADLYGVKEKARTAELLELFDLA---EHK----DKPAGT--------YSTGMKKRLALAK 142
Cdd:PRK09580 81 FM--AFQYPvEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQdlmEEKiallKMPEDLltrsvnvgFSGGEKKRNDILQ 158
|
170 180
....*....|....*....|....*.
gi 917220261 143 ALLHKPKLLYLDEPTNGLDPDGIKMV 168
Cdd:PRK09580 159 MAVLEPELCILDESDSGLDIDALKIV 184
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-161 |
1.06e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 46.27 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 1 MINVTGASKSFGSHSV----LNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVI----KPDSGEISIFGHD-PATSGDE 71
Cdd:PRK11022 3 LLNVDKLSVHFGDESApfraVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIdypgRVMAEKLEFNGQDlQRISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 72 IRKLSGvvTESAGLYHQLSGQENLSF---FADLYGVK---------EKARTAELLELF---DLAEHKDKPAGTYSTGMKK 136
Cdd:PRK11022 83 RRNLVG--AEVAMIFQDPMTSLNPCYtvgFQIMEAIKvhqggnkktRRQRAIDLLNQVgipDPASRLDVYPHQLSGGMSQ 160
|
170 180
....*....|....*....|....*
gi 917220261 137 RLALAKALLHKPKLLYLDEPTNGLD 161
Cdd:PRK11022 161 RVMIAMAIACRPKLLIADEPTTALD 185
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
19-217 |
1.08e-05 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 45.85 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 19 DVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPD----SGEISIFGHDPATSGDEIRKLSGVVTESAGLYHQLS---- 90
Cdd:PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGvrqtAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHtmht 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 91 -GQENLsffADLYGVKEKARTAELLELFDLAEhKDKPAGTY----STGMKKRLALAKALLHKPKLLYLDEPTNGLDPDGI 165
Cdd:PRK10418 101 hARETC---LALGKPADDATLTAALEAVGLEN-AARVLKLYpfemSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 917220261 166 KMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK10418 177 ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
16-217 |
1.42e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 46.70 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEISIFGHDPATSG-DEIRKLSGVVTESAGLYHQlSGQEN 94
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGlRELRRQFSMIPQDPVLFDG-TVRQN 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 95 LSFFADlygvkekARTAEL---LELFDLAEHKDKPAG-----------TYSTGMKKRLALAKALLHK-PKLLYLDEPTNG 159
Cdd:PTZ00243 1404 VDPFLE-------ASSAEVwaaLELVGLRERVASESEgidsrvleggsNYSVGQRQLMCMARALLKKgSGFILMDEATAN 1476
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 917220261 160 LDPDGIKM----VLSYLKKYnketgtTIIICSHVLHQLEPvCDSFAFLENRTIVEQGTVFEL 217
Cdd:PTZ00243 1477 IDPALDRQiqatVMSAFSAY------TVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPREL 1531
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
19-217 |
2.22e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 46.00 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 19 DVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGEIS----------------------------------IFgHD 64
Cdd:PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQcdkmllrrrsrqvielseqsaaqmrhvrgadmamIF-QE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 65 PATSGDEIRKLSGVVTESAGLYHQLSGQENLsffADLYGVKEKARTAELLELFDLAEHKdkpagtYSTGMKKRLALAKAL 144
Cdd:PRK10261 113 PMTSLNPVFTVGEQIAESIRLHQGASREEAM---VEAKRMLDQVRIPEAQTILSRYPHQ------LSGGMRQRVMIAMAL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917220261 145 LHKPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKETGTTIIICSHVLHQLEPVCDSFAFLENRTIVEQGTVFEL 217
Cdd:PRK10261 184 SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
16-226 |
5.72e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 44.63 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 16 VLNDVNFKAEEGRIIGLLGPNGAGKTTFIRILNGVIKPDSGE--------------------ISIFGHDPATSGDEIRK- 74
Cdd:PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDiiindshnlkdinlkwwrskIGVVSQDPLLFSNSIKNn 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 75 -------------LSGVVTES---------------AGLYHQLSGQENLSFFADLYGVKEKARTAELLELFDLAEH---- 122
Cdd:PTZ00265 480 ikyslyslkdleaLSNYYNEDgndsqenknkrnscrAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKvlih 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 123 ------KDK-------PAGTYSTGMKKRLALAKALLHKPKLLYLDEPTNGLDPDG---IKMVLSYLKkyNKETGTTIIIC 186
Cdd:PTZ00265 560 dfvsalPDKyetlvgsNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSeylVQKTINNLK--GNENRITIIIA 637
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 917220261 187 shvlHQLEPV--CDSFAFLENRTIVEQGTVFELSDKYLKDVK 226
Cdd:PTZ00265 638 ----HRLSTIryANTIFVLSNRERGSTVDVDIIGEDPTKDNK 675
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
88-191 |
6.35e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 44.62 E-value: 6.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGQENLSFFADLYGVKEKARTaelleLFDLAEHKDK---PAGTYSTGMKKRLALAKALLHKP--KLLY-LDEPTNGLD 161
Cdd:TIGR00630 790 DMTVEEAYEFFEAVPSISRKLQT-----LCDVGLGYIRlgqPATTLSGGEAQRIKLAKELSKRStgRTLYiLDEPTTGLH 864
|
90 100 110
....*....|....*....|....*....|
gi 917220261 162 PDGIKMVLSYLKKYnKETGTTIIICSHVLH 191
Cdd:TIGR00630 865 FDDIKKLLEVLQRL-VDKGNTVVVIEHNLD 893
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
11-195 |
1.04e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 41.96 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 11 FGSHSVLNDVNFkaEEGRIIGLLGPNGAGKTTFIRilngvikpDSGEISIFGHDPATSGDEIRKLSGVVTESAGLY---H 87
Cdd:cd03227 7 FPSYFVPNDVTF--GEGSLTIITGPNGSGKSTILD--------AIGLALGGAQSATRRRSGVKAGCIVAAVSAELIftrL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 88 QLSGqenlsffadlyGVKEKARTAellelfdlaehkdkpagtystgmkkrLALAKALLHKPKLLYLDEPTNGLDPDGIKM 167
Cdd:cd03227 77 QLSG-----------GEKELSALA--------------------------LILALASLKPRPLYILDEIDRGLDPRDGQA 119
|
170 180
....*....|....*....|....*...
gi 917220261 168 VLSYLKKYNKETGTTIIIcSHVLHQLEP 195
Cdd:cd03227 120 LAEAILEHLVKGAQVIVI-THLPELAEL 146
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
124-188 |
1.90e-04 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 41.54 E-value: 1.90e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 124 DKPAGTYSTGMKKRLALAKAL-LHKPKLLY-LDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSH 188
Cdd:cd03238 82 GQKLSTLSGGELQRVKLASELfSEPPGTLFiLDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEH 147
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| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
126-188 |
3.70e-04 |
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AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 41.61 E-value: 3.70e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917220261 126 PAGTYSTGMKKRLALAKALL---HKPKLLYLDEPTNGLDPDGIKMVLSYLKKyNKETGTTIIICSH 188
Cdd:pfam13304 233 PAFELSDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKE-LSRNGAQLILTTH 297
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| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
125-198 |
9.68e-04 |
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excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 40.97 E-value: 9.68e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917220261 125 KPAGTYSTGMKKRLALAKALLH---KPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtGTTIIICSHVLHQLEpVCD 198
Cdd:PRK00635 805 RPLSSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVVK-VAD 879
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| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
131-195 |
2.49e-03 |
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Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 39.14 E-value: 2.49e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917220261 131 STGMKKRLALAKALLH--KPKLLYLDEPTNGLDPDGIKMVLSYLKKYNKEtgTTIIICSH---VLHQLEP 195
Cdd:COG4637 260 SDGTLRFLALLAALLSprPPPLLCIEEPENGLHPDLLPALAELLREASER--TQVIVTTHspaLLDALEP 327
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| ABC_MSH6_euk |
cd03286 |
ATP-binding cassette domain of eukaryotic MutS6 homolog; The MutS protein initiates DNA ... |
7-45 |
2.93e-03 |
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ATP-binding cassette domain of eukaryotic MutS6 homolog; The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.
Pssm-ID: 213253 [Multi-domain] Cd Length: 218 Bit Score: 38.18 E-value: 2.93e-03
10 20 30
....*....|....*....|....*....|....*....
gi 917220261 7 ASKSFGSHSVLNDVNFKAEEGRIIGLLGPNGAGKTTFIR 45
Cdd:cd03286 10 LNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLR 48
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