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Conserved domains on  [gi|917437167|ref|WP_052043585|]
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phosphate ABC transporter permease subunit PstC [Oligella urethralis]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 23-340 1.80e-141

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK11275:

Pssm-ID: 444901  Cd Length: 319  Bit Score: 402.92  E-value: 1.80e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  23 SKSLPPSPSRRGfalaDLIFANAARFFAFFVFILLAAIMLSLVYGSWDSLKAFGVSFLFSTEWNPVQNQYGAVVPIIGTL 102
Cdd:PRK11275   4 TKPAFNAPGKKG----DIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 103 VTAGIALVIAVPASFGIAMFLTELAPTWIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYIQVHLISFFAPIPVLNQ 182
Cdd:PRK11275  80 VTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 183 LFAGPPMGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRAL 262
Cdd:PRK11275 160 LFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 263 GETMAVTFVIGNAFRSPN-SIFAPSNSIASAIANEFNEA-SGLQLAALIELGLILFLITTVVLSLSRWMLYRMNKGQGTK 340
Cdd:PRK11275 240 GETMAVTFIIGNTYQLDSaSLYMPGNSITSALANEFAEAeSGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGAR 319
 
Name Accession Description Interval E-value
pstC PRK11275
phosphate ABC transporter permease PstC;
23-340 1.80e-141

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 402.92  E-value: 1.80e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  23 SKSLPPSPSRRGfalaDLIFANAARFFAFFVFILLAAIMLSLVYGSWDSLKAFGVSFLFSTEWNPVQNQYGAVVPIIGTL 102
Cdd:PRK11275   4 TKPAFNAPGKKG----DIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 103 VTAGIALVIAVPASFGIAMFLTELAPTWIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYIQVHLISFFAPIPVLNQ 182
Cdd:PRK11275  80 VTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 183 LFAGPPMGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRAL 262
Cdd:PRK11275 160 LFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 263 GETMAVTFVIGNAFRSPN-SIFAPSNSIASAIANEFNEA-SGLQLAALIELGLILFLITTVVLSLSRWMLYRMNKGQGTK 340
Cdd:PRK11275 240 GETMAVTFIIGNTYQLDSaSLYMPGNSITSALANEFAEAeSGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGAR 319
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 24-338 2.72e-115

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 335.91  E-value: 2.72e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  24 KSLPPSPSRRGFALADLIFANAARFFAFFVFILLAAIMLSLVYGSWDSLKAFGV-SFLFSTEWNPV--QNQYGAVVPIIG 100
Cdd:COG0573    2 SSSRLRPRRRRRRLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGLlEFLTGTEWNPVssNGEFGILPLIVG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 101 TLVTAGIALVIAVPASFGIAMFLTELAPTWIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYiqvhlisffapipvl 180
Cdd:COG0573   82 TLLVSLIALLIAVPLGLGIAIFLSEYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDL--------------- 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 181 nqlFAGPPMGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGR 260
Cdd:COG0573  147 ---FPWPPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGR 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 261 ALGETMAVTFVIGNAFRSPNSIFAPSNSIASAIANEFNEA--SGLQLAALIELGLILFLITTVVLSLSRWMLYRMNKGQG 338
Cdd:COG0573  224 ALGETMAVLMVAGNAPQIPFSLFDPGRTLTALIALEFGEApfGSLHYSALFALGLVLFVITLLVNLLARLIVRRYREKYG 303
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 55-333 5.64e-90

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 271.45  E-value: 5.64e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167   55 ILLAAIMLSLVYGSWDSLKAFGVS-FLFSTEWNP----VQNQYGAVVPIIGTLVTAGIALVIAVPASFGIAMFLTELAPT 129
Cdd:TIGR02138  17 LVLLLIVLFLLYEAIPAFEKNGILnFLTGTVWDPgsgpVQEQYGALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPK 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  130 WIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYIQVHLIsffapipvlNQLFAGPPMGIGLFTAGLILSIMIIPYIA 209
Cdd:TIGR02138  97 RVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLG---------SNLGLIPLFGGPILTAGIVLAIMILPTIA 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  210 SVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIGNAF-RSPNSIFAPSNS 288
Cdd:TIGR02138 168 SISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFpISPLSLFDPGTT 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 917437167  289 IASAIANEFNEASG--LQLAALIELGLILFLITTVVLSLSRWMLYRM 333
Cdd:TIGR02138 248 ITSLIANQFGEASGgsVHTSALFALGLVLFVITLLVNILARYIVRRR 294
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-282 7.99e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.93  E-value: 7.99e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  98 IIGTLVTAGIALVIAVPASFGIAMFLTELAPtWIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYIQVHLIsffapi 177
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG------ 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 178 pvlnqlfagppmgiglFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLG 257
Cdd:cd06261   74 ----------------LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137

                        170       180
                 ....*....|....*....|....*
gi 917437167 258 LGRALGETMAVTFVIGNAFRSPNSI 282
Cdd:cd06261  138 FARALGEFALVSFLGGGEAPGPGTG 162
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 171-294 4.13e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 4.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  171 ISFFAPIPVLNQLFAGPPMGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGV 250
Cdd:pfam00528  30 LPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPI 109

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 917437167  251 IGGIMLGLGRALGETMAVTFV-----IGNAFRSPNSIFAPSNSIASAIA 294
Cdd:pfam00528 110 LTGLALAFGGALGGAVLLEFLgswpgLGLLLIEAILGYDYPEIQGPVLA 158
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 177-274 2.54e-04

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 41.38  E-value: 2.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 177 IPVLNQLFAGPPMGIGLF--------------------TAGLILSIMII-PYIASVMRDVFSVVPPMFKESAYGLGATTW 235
Cdd:NF038017  35 ISLLNTLMGLPPVVVGLIvylllsrsgplgflgllytpTAMIIAQAVLAlPIVAGLTLAAVQGLDPELRLQILSLGATRW 114

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 917437167 236 EVMWrVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIGN 274
Cdd:NF038017 115 QALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVGGN 152
 
Name Accession Description Interval E-value
pstC PRK11275
phosphate ABC transporter permease PstC;
23-340 1.80e-141

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 402.92  E-value: 1.80e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  23 SKSLPPSPSRRGfalaDLIFANAARFFAFFVFILLAAIMLSLVYGSWDSLKAFGVSFLFSTEWNPVQNQYGAVVPIIGTL 102
Cdd:PRK11275   4 TKPAFNAPGKKG----DIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 103 VTAGIALVIAVPASFGIAMFLTELAPTWIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYIQVHLISFFAPIPVLNQ 182
Cdd:PRK11275  80 VTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 183 LFAGPPMGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRAL 262
Cdd:PRK11275 160 LFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 263 GETMAVTFVIGNAFRSPN-SIFAPSNSIASAIANEFNEA-SGLQLAALIELGLILFLITTVVLSLSRWMLYRMNKGQGTK 340
Cdd:PRK11275 240 GETMAVTFIIGNTYQLDSaSLYMPGNSITSALANEFAEAeSGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGAR 319
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 24-338 2.72e-115

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 335.91  E-value: 2.72e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  24 KSLPPSPSRRGFALADLIFANAARFFAFFVFILLAAIMLSLVYGSWDSLKAFGV-SFLFSTEWNPV--QNQYGAVVPIIG 100
Cdd:COG0573    2 SSSRLRPRRRRRRLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGLlEFLTGTEWNPVssNGEFGILPLIVG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 101 TLVTAGIALVIAVPASFGIAMFLTELAPTWIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYiqvhlisffapipvl 180
Cdd:COG0573   82 TLLVSLIALLIAVPLGLGIAIFLSEYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDL--------------- 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 181 nqlFAGPPMGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGR 260
Cdd:COG0573  147 ---FPWPPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGR 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 261 ALGETMAVTFVIGNAFRSPNSIFAPSNSIASAIANEFNEA--SGLQLAALIELGLILFLITTVVLSLSRWMLYRMNKGQG 338
Cdd:COG0573  224 ALGETMAVLMVAGNAPQIPFSLFDPGRTLTALIALEFGEApfGSLHYSALFALGLVLFVITLLVNLLARLIVRRYREKYG 303
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 55-333 5.64e-90

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 271.45  E-value: 5.64e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167   55 ILLAAIMLSLVYGSWDSLKAFGVS-FLFSTEWNP----VQNQYGAVVPIIGTLVTAGIALVIAVPASFGIAMFLTELAPT 129
Cdd:TIGR02138  17 LVLLLIVLFLLYEAIPAFEKNGILnFLTGTVWDPgsgpVQEQYGALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPK 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  130 WIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYIQVHLIsffapipvlNQLFAGPPMGIGLFTAGLILSIMIIPYIA 209
Cdd:TIGR02138  97 RVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLG---------SNLGLIPLFGGPILTAGIVLAIMILPTIA 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  210 SVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIGNAF-RSPNSIFAPSNS 288
Cdd:TIGR02138 168 SISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFpISPLSLFDPGTT 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 917437167  289 IASAIANEFNEASG--LQLAALIELGLILFLITTVVLSLSRWMLYRM 333
Cdd:TIGR02138 248 ITSLIANQFGEASGgsVHTSALFALGLVLFVITLLVNILARYIVRRR 294
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 55-335 1.12e-39

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 140.56  E-value: 1.12e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  55 ILLAAIMLSLVygsWDSLKAFGVSFLFSTEwNPVQNQYGAVVPIIGTLVTAGIALVIAVPASFGIAMFLTELAP-TWIKR 133
Cdd:COG0581    4 LPLVWILGTVL---VKGLPALSWEFLTSSP-SPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARgGRLAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 134 PLGIAVEMLAAIPSIIYGMWGLFVFVPLFQkyiqvhlisffapipvlnqlfagppMGIGLFTAGLILSIMIIPYIASVMR 213
Cdd:COG0581   80 LIRFAIDVLAGVPSIVYGLFGYALFVLTLG-------------------------LGFSLLAGALALALLMLPVVIRTTE 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 214 DVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIGNAFRSPNSIFAPSNSIASAI 293
Cdd:COG0581  135 EALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFLPLSLFDPFATLPVHI 214

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 917437167 294 aneFNEASGLQlAALIELG----LILFLITTVVLSLSRWMLYRMNK 335
Cdd:COG0581  215 ---YNLASSPY-PAAQELAwaaaLVLLLLVLLLNLLARLLRRRFRK 256
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 80-335 2.67e-28

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 110.79  E-value: 2.67e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167   80 LFSTEWNPVqNQYGAVVP-IIGTLVTAGIALVIAVPASFGIAMFLTELAPT-WIKRPLGIAVEMLAAIPSIIYGMWGLFV 157
Cdd:TIGR00974  38 FFTKSPTPT-GAEGGIGPaIVGTLLLTLLAIVIAVPLGIGAAIYLAEYANGsRFTKIIRFAVDILAGVPSIVVGLFGYGF 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  158 FVplfqkyiqvhlisffapipvlNQLFAGppmGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEV 237
Cdd:TIGR00974 117 FV---------------------LTYLGG---GFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQT 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  238 MWRVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIGNAFRSPNSIFAPSNSIASAIANEFN-----EASGLQLAAlielG 312
Cdd:TIGR00974 173 IFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFTPPNLFDPFATLPVLIYNLASegpyvEAQQLAWAA----A 248

                         250       260
                  ....*....|....*....|...
gi 917437167  313 LILFLITTVVLSLSRWMLYRMNK 335
Cdd:TIGR00974 249 LVLIVLVLLLNLIARLLRRRFKK 271
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-282 7.99e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.93  E-value: 7.99e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  98 IIGTLVTAGIALVIAVPASFGIAMFLTELAPtWIKRPLGIAVEMLAAIPSIIYGMWGLFVFVPLFQKYIQVHLIsffapi 177
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG------ 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 178 pvlnqlfagppmgiglFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLG 257
Cdd:cd06261   74 ----------------LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137

                        170       180
                 ....*....|....*....|....*
gi 917437167 258 LGRALGETMAVTFVIGNAFRSPNSI 282
Cdd:cd06261  138 FARALGEFALVSFLGGGEAPGPGTG 162
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 97-335 5.91e-12

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 64.30  E-value: 5.91e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  97 PIIGTLVTAGIALVIAVPASFGIAMFLTElAPTWIKRPLGIAVEMLAAIPSIIYGmwglfvfvplfqkyiqVHLISFFAP 176
Cdd:COG4149    8 ALWLSLKVALIATLLLLLLGIPLAWWLAR-TRFRGKGLLEALVTLPLVLPPTVLG----------------FYLLLLFGR 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 177 IPVLNQLFAGPpMGIGL-FT-AGLIL--SIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIG 252
Cdd:COG4149   71 NGPLGQLLEEL-FGISLvFTwTGAVLasVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILA 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 253 GIMLGLGRALGETMAVTFVIGNafrspnsIFAPSNSIASAIaneFNEASGLQLAALIELGLILFLITTVVLSLSRWMLYR 332
Cdd:COG4149  150 GAVLAFARALGEFGATLMFAGN-------IPGKTQTLPLAI---YDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRR 219


                 ...
gi 917437167 333 MNK 335
Cdd:COG4149  220 RRR 222
COG4590 COG4590
ABC-type uncharacterized transport system, permease component [General function prediction ...
 204-322 1.27e-10

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443647 [Multi-domain]  Cd Length: 757  Bit Score: 62.55  E-value: 1.27e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 204 IIPYIASVMRD-VFSVvPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIGNafrSP--- 279
Cdd:COG4590  619 VIPTIFSIAEDaIFSV-PKHLTQGSLALGATPWQTLTRVVLLTASPGIFSAVMIGLGRAVGETMIVLMATGN---TPvmd 694

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 917437167 280 NSIFAPSNSIASAIANEFNEAS-G------LQLAAlielgLILFLITTVV 322
Cdd:COG4590  695 FNIFEGMRTLSANIAVEMPESEvGsthyrvLFLAA-----LVLFVFTFVF 739
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 102-337 2.21e-10

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 60.13  E-value: 2.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 102 LVTAGIALVIAVPASFGIAMFltelaPTWIKRPLGIAVEMLAAIPSIIYGMwGLFVFvplfqkyiqvhlisffapipvln 181
Cdd:COG1177   71 LLSTLLATVLGTPAALALARY-----RFRGRRLLLALLLLPLVVPGIVLGV-ALLLL----------------------- 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 182 qlFAGPPMGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRA 261
Cdd:COG1177  122 --FSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLS 199

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 917437167 262 LGETMAVTFVIGNAFrspnsifapsNSIASAIANEFNEASGLQLAAlieLGLILFLITTVVLSLSRWMLYRMNKGQ 337
Cdd:COG1177  200 FDEFVITLFLAGPGV----------TTLPVYIYSMIRRGISPEINA---LSTLLILLSLLLLLLAERLRRRGERRR 262
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 101-274 1.10e-09

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 58.22  E-value: 1.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 101 TLVTAGIALVIAVPASFGIAMFLTELaPTWIKRPLGIAVEMLAAIPSIIYGmwglfvfvplfqkyiqVHLISFFAPIPVL 180
Cdd:COG0555   59 SLGTALIAALINLVFGLPLAWVLVRY-RFPGKRLVDALVDLPFALPTAVAG----------------IALLLLFGPNGWL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 181 NQLFAgpPMGIGL-FT-AGLILSIMII--PYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIML 256
Cdd:COG0555  122 GQLLA--PLGIKVaFTpLGIVLAQTFVslPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFAL 199

                        170
                 ....*....|....*...
gi 917437167 257 GLGRALGETMAVTFVIGN 274
Cdd:COG0555  200 AFARALGEFGAVIFIAGN 217
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
55-332 1.08e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 56.32  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  55 ILLAAIMLSLVYGSWDSLKAFGVSFlfsTEWNPVQNQYGAVVPIIGTLVTAGIALVIAVPASFGIAmFLTELAPTWIKRP 134
Cdd:COG1178  300 LGLLLPLLALLLWSLTKALDDNLTL---DNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLA-YLVRRRRGRLARL 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 135 LGIAVEMLAAIPSIIYGMwGLFvfvplfqkyiqvhlisffapipvlnqLFAGPPMGIGLFTAGLIL----SIMIIPYIAS 210
Cdd:COG1178  376 LDRLAMLPYAVPGIVLGL-GLL--------------------------LLFNRPLPLLLYGTLAILvlayVVRFLPFALR 428

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 211 VMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVTFvignaFRSPNsifapSNSIA 290
Cdd:COG1178  429 SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLL-----LRPPG-----FETLA 498

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 917437167 291 SAIANEFNEASgLQLAALieLGLILFLITTVVLSLSRWMLYR 332
Cdd:COG1178  499 VLIYQLASSGR-YGEAAA--LALLLVLVSLLPVLLLERLLGR 537
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 98-338 6.74e-08

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 53.23  E-value: 6.74e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  98 IIGTLVTAGIALVIAVPASFGIAMFLTELAPTWikRPLGIaveMLAAIPSIIYGMWGLFVFVPLFQKY-------IQVHL 170
Cdd:COG1176   69 LLRTLWIALLTTLICLLLGYPIAYFLARAPPRW--RNLLL---LLVILPFWTSFLVRTYAWIVLLGRNgllnsllLALGL 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 171 ISffAPIPVLNQLFAgppMGIGLFTAGLILsiMIIPYIASVMRdvfsvVPPMFKESAYGLGATTWEVMWRVVLPYTKGGV 250
Cdd:COG1176  144 ID--EPLRLLYTEFA---VVIGLVYVYLPF--MVLPLYAALEK-----IDPSLLEAARDLGASPWQTFRRVILPLSLPGI 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 251 IGGIMLGLGRALGETMAVTFVIGNAfrspnsifapSNSIASAIANEFNEASGLQLAALieLGLILFLITTVVLSLSRWML 330
Cdd:COG1176  212 IAGSLLVFIPALGAFVTPALLGGGK----------VLMIGNLIYQQFLSALNWPLAAA--LAVVLLLIVLLVLLLYLRLL 279


                 ....*...
gi 917437167 331 YRMNKGQG 338
Cdd:COG1176  280 RRRRLLGG 287
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
55-330 3.93e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 51.32  E-value: 3.93e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  55 ILLAAIMLSLVYGSWDSLKAFGVSFLFSTE-WNPVQNqygavvpiigTLVTAGIALVIAVPASFGIAmFLTELAPTWIKR 133
Cdd:COG1178   22 LLVLLPLLALLLRAFTDGLANFWALLSDPYlWRALGN----------TLLLALLVTLLSLLLGVPLA-WLLARTDFPGRR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 134 PLGIAVEMLAAIPSIIYGMwglfvfvplfqkyiqvHLISFFAPIPVLNQLFAGPPmGI------GLFTAGLILSIMIIPY 207
Cdd:COG1178   91 LLRWLLLLPLALPPYVVAL----------------AWIALFGPNGLLNTLLRALF-GLeppdiyGLGGIILVLVLFNYPY 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 208 IASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGEtMAVTFVIGNAFrspnsifapsN 287
Cdd:COG1178  154 VYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD-FGTPLVLGGGY----------T 222

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 917437167 288 SIASAIANEFNEASGLQLAALieLGLILFLITTVVLSLSRWML 330
Cdd:COG1178  223 TLTTAIYQAWLGDFDLGAAAA--LALVLLLLVLLLLLLERRLR 263
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
205-274 5.99e-07

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 50.14  E-value: 5.99e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 205 IPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIGN 274
Cdd:PRK10971 152 IPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGN 221
cysT CHL00187
sulfate transport protein; Provisional
 193-274 6.73e-07

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 49.63  E-value: 6.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 193 LFTAGLILSIMI---IPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVT 269
Cdd:CHL00187 134 VFTKLGVLLAMIfvsFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIV 213


                 ....*
gi 917437167 270 FVIGN 274
Cdd:CHL00187 214 IISSN 218
modB PRK09421
molybdate ABC transporter permease subunit;
196-335 2.08e-06

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 47.99  E-value: 2.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 196 AGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMA-VTFVign 274
Cdd:PRK09421  95 AALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGAtITFV--- 171

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917437167 275 afrspNSIFAPSNSIASAIANeFNEASGLQLAALiELGLILFLITTVVLSLSRWMLYRMNK 335
Cdd:PRK09421 172 -----SNIPGETQTIPSAMYT-LIQTPGGESAAA-RLCIISIAIALASLLLSEWLARRSRK 225
pstA PRK11268
phosphate ABC transporter permease PstA;
76-270 2.91e-06

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 48.14  E-value: 2.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  76 GVSFLFSTEWNPVQNQYGAVVP--IIGTLVTAGIALVIAVPASFGIAMFLTELAP-TWIKRPLGIAVEMLAAIPSIIYGm 152
Cdd:PRK11268  59 GMSLALFTEMTPPPNTAGGGLAnaIAGSGLLILWATVVGTPLGIMAGIYLAEYGRkSWLAEVIRFINDILLSAPSIVVG- 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 153 wgLFVFVPLFQKYiqvhlisffapipvlnQLFAGppmgiglfTAGLI-LSIMIIPYIASVMRDVFSVVPPMFKESAYGLG 231
Cdd:PRK11268 138 --LFVYTIVVAQM----------------EHFSG--------WAGVIaLALLQIPIVIRTTENMLKLVPDSLREAAYALG 191

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 917437167 232 ATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVTF 270
Cdd:PRK11268 192 TPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLF 230
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 171-294 4.13e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 4.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  171 ISFFAPIPVLNQLFAGPPMGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGV 250
Cdd:pfam00528  30 LPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPI 109

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 917437167  251 IGGIMLGLGRALGETMAVTFV-----IGNAFRSPNSIFAPSNSIASAIA 294
Cdd:pfam00528 110 LTGLALAFGGALGGAVLLEFLgswpgLGLLLIEAILGYDYPEIQGPVLA 158
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 177-274 2.54e-04

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 41.38  E-value: 2.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 177 IPVLNQLFAGPPMGIGLF--------------------TAGLILSIMII-PYIASVMRDVFSVVPPMFKESAYGLGATTW 235
Cdd:NF038017  35 ISLLNTLMGLPPVVVGLIvylllsrsgplgflgllytpTAMIIAQAVLAlPIVAGLTLAAVQGLDPELRLQILSLGATRW 114

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 917437167 236 EVMWrVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIGN 274
Cdd:NF038017 115 QALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVGGN 152
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 189-262 4.57e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 41.29  E-value: 4.57e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917437167 189 MGIGLFTAGLILSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRAL 262
Cdd:COG0600  121 FGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 200-282 1.32e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 40.08  E-value: 1.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 200 LSIMIIPYIASVMRDVFSVVppmfkESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGEtmavtFVIGNAFRSP 279
Cdd:PRK10683 196 LPFMVLPIYTALTRIDYSLV-----EAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGE-----FVIPELLGGP 265


                 ...
gi 917437167 280 NSI 282
Cdd:PRK10683 266 DSI 268
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
215-273 3.39e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 38.58  E-value: 3.39e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 917437167 215 VFSVVPPMFK------ESAYGLGATTWEVMWRVVLPYTKGGVIGGIMLGLGRALGETMAVTFVIG 273
Cdd:PRK11602 162 VRELVPVMLSqgsqedEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSG 226
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 171-244 5.07e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 37.75  E-value: 5.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 171 ISFFAPIPVLNQLF----AGPPMGIGL--FTAGLI-LSIMIIPYIASVMRDVFSVVPPMFKESAYGLGATTWEVMWRVVL 243
Cdd:COG0765   59 VEFFRGTPLLVQLFfiyfGLPLLGIDLspFVAAVIaLTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIIL 138


                 .
gi 917437167 244 P 244
Cdd:COG0765  139 P 139
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 92-262 6.68e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 37.79  E-value: 6.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167  92 YGAVVPIIGTLVTAGIALVIAVPASFGIAMFltelaPTWIKRPLGIAVEMLAAIPSIIYGMwgLFVFVplfqkyiqvhli 171
Cdd:COG1173   76 YGARISLLVGLLAVLIALVIGVLLGLLAGYF-----GGWVDAVLMRLVDVLLAFPSLLLAI--ALVAV------------ 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917437167 172 sffapipvlnqlfagppMGIGLFTAGLILSIMIIPYIASVMR-DVFSVVPPMFKESAYGLGATTWEVMWRVVLPYTKGGV 250
Cdd:COG1173  137 -----------------LGPGLLNVILALGLTGWPGYARLVRaQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPL 199

                        170
                 ....*....|..
gi 917437167 251 IGGIMLGLGRAL 262
Cdd:COG1173  200 IVQATLGIASAI 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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