|
Name |
Accession |
Description |
Interval |
E-value |
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
6-774 |
4.58e-153 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 472.80 E-value: 4.58e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 6 LLTVVFIMIFGVTVTAFLRLDIDTDIVRSLPSGQTVISDAL-EIFTSHPIHDQIAIDIsvESDNRDILVDCGKYIEEGLR 84
Cdd:COG4258 11 ALLLWLLLLLALLALLASRLRFDTDILALLPADETDEQALLaDQLREGPLSRQILVLI--SGGDPAQLAAAARALAAALR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 85 SSNLFAEVGTDaITTLIPELALHVAGNLPILFSSQEleqmiAPRLEKRFIGQRFEDILLKLSSLEGIGQSQLLQSDPLGF 164
Cdd:COG4258 89 ASGLFASVQNG-IPADLEALRDFLFPHRYLLLPAAD-----RERLTADGLRAALQDRLDQLYSPAGGVSKQLLLRDPLGL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 165 MEPIMAKMAMLTPlpGTSIYKGFVFSPDRRHLLVTARPGSAGSNTASARQIAELLDDLSTGLTNKYSSsgitPILTPVGA 244
Cdd:COG4258 163 SRRLLEKLQPLGS--RPRLRDGVLVSRDGTWALLLAETRASGFDTDAQQQLVAALRAAFAALNAAFPG----AQLLLTGA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 245 YRAALDNESIIRHDVNLALALSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLFHQSISIMVLGFGGAIISIT 324
Cdd:COG4258 237 GLFAVAAAQQIKHDISTIGLISLLGILLLLLLVFRSLRPLLLGLLPVAVGALAGLAAVSLVFGSVHGITLGFGSSLIGVA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 325 VDHGIAYLLFLDRPQETKGKEASSEVRAIGILAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFLFVHFIFPRITPS 404
Cdd:COG4258 317 VDYSLHYLTHRRAAGEWDPRAALRRIWPTLLLGLLTTVLGYLALLFSPFPGLRQLGVFAAAGLLAAALTTLLWLPLLLPR 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 405 MAAASRQNLP--LRRFVDTLYSTGRPGAIAATLLAASLLFF-ARPDFNVSLESMNTVSSETRAADSLFSMVWGDMGTKVV 481
Cdd:COG4258 397 AAPRPPAPALalLARLLARWPRRLRWLLALLAVLALASLLGlNRLKWNDDLRALNPVPAALLAQEARLRALLGAPDVSQY 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 482 LMTRGEAAE-IQRKNDRILMQIESNMASGTISSAFVPSMIFPGPELAARNFDAWKkfwtkeRHENLQESLSSNGKSLGFA 560
Cdd:COG4258 477 LVVYGPDAEqALQRNEALLPRLDALVAQGAIAGYQSLSRLLPSAATQQARQALLP------DLAALRPRLAEALAGLGFR 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 561 EDAFAHFLRLTGNPQKISSTEIPQ-------KFYKLLGLSKKDSQLTQFITITPGTnyNSDDFYSLYGREGK--LFDGPY 631
Cdd:COG4258 551 PDAFAPFLADLEAARAAPPLTPEDllasplaAALRLLLLGRKDGQWAALVPLRGVD--DAAALRAAAAGLPGvrLVDRKA 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 632 FSEQLAKILFHSFTTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGLMLSIVILGMGID 711
Cdd:COG4258 629 ESSSLFGRYRNDALWLLLLALLLILLLLLLRLRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGID 708
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 918061468 712 YSIFFVRAHQryrvpDHPSFSLVRMAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGIGYS 774
Cdd:COG4258 709 YALFFTEGLL-----DKGELARTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGILLA 766
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
621-772 |
4.82e-17 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 86.43 E-value: 4.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 621 GREGKLFDGPYFSEQLAKILFHSFTTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGLM 700
Cdd:TIGR00921 172 GKFLDVTGSPAINYDIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 701 LSIVILGMGIDYSIFFvraHQRY-------RVPDHPSFSLVR---MAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLG 770
Cdd:TIGR00921 252 AVPMLIGVGIDYGIQT---LNRYeeerdigRAKGEAIVTAVRrtgRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAG 328
|
..
gi 918061468 771 IG 772
Cdd:TIGR00921 329 LI 330
|
|
| Methyltransf_23 |
pfam13489 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
834-995 |
1.67e-12 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 404385 [Multi-domain] Cd Length: 162 Bit Score: 66.30 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 834 DLPQLLAADRDSVKTILDIGCGYGVpgcWCLEYFPE-SRVFGLDPDGERVRVAALAMgeqgeILEDMAPDLPIVPN-PPD 911
Cdd:pfam13489 11 DLLLRLLPKLPSPGRVLDFGCGTGI---FLRLLRAQgFSVTGVDPSPIAIERALLNV-----RFDQFDEQEAAVPAgKFD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 912 LILLLDMLHYLDDksILILFQKCFQMLNDQGLLVtrFVIRPNGVPSWSWKLEDRRVRFSGGEAHYRTAQRMAHLLEKTGF 991
Cdd:pfam13489 83 VIVAREVLEHVPD--PPALLRQIAALLKPGGLLL--LSTPLASDEADRLLLEWPYLRPRNGHISLFSARSLKRLLEEAGF 158
|
....
gi 918061468 992 RIET 995
Cdd:pfam13489 159 EVVS 162
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
833-945 |
1.82e-12 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 65.04 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 833 TDLPQLLAADRDSVKTILDIGCGYGvpgcWCLEYFPES--RVFGLDPDGERVRVAALAMGEQG-EILEDMAPDLPIVPNP 909
Cdd:COG2227 12 RRLAALLARLLPAGGRVLDVGCGTG----RLALALARRgaDVTGVDISPEALEIARERAAELNvDFVQGDLEDLPLEDGS 87
|
90 100 110
....*....|....*....|....*....|....*.
gi 918061468 910 PDLILLLDMLHYLDDksILILFQKCFQMLNDQGLLV 945
Cdd:COG2227 88 FDLVICSEVLEHLPD--PAALLRELARLLKPGGLLL 121
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
645-771 |
1.14e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 51.91 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 645 TTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPG-----LMLSIVILGMGIDYSIFFVRA 719
Cdd:pfam03176 145 GLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILAHILGIGLstfalNLLVVLLIAVGTDYALFLVSR 224
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 918061468 720 HQRYRVPDHPSFSLVR-------MAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGI 771
Cdd:pfam03176 225 YREELRAGEDREEAVIravrgtgKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGV 283
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
848-950 |
2.02e-05 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 44.34 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 848 TILDIGCGYGVPGCWcLEYFPESRVFGLDPDGERVRVAALAMGEQGE-----ILEDMAPDLPIVPNPPDLILLLDMLHYL 922
Cdd:cd02440 1 RVLDLGCGTGALALA-LASGPGARVTGVDISPVALELARKAAAALLAdnvevLKGDAEELPPEADESFDVIISDPPLHHL 79
|
90 100
....*....|....*....|....*...
gi 918061468 923 DDkSILILFQKCFQMLNDQGLLVTRFVI 950
Cdd:cd02440 80 VE-DLARFLEEARRLLKPGGVLVLTLVL 106
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
6-774 |
4.58e-153 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 472.80 E-value: 4.58e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 6 LLTVVFIMIFGVTVTAFLRLDIDTDIVRSLPSGQTVISDAL-EIFTSHPIHDQIAIDIsvESDNRDILVDCGKYIEEGLR 84
Cdd:COG4258 11 ALLLWLLLLLALLALLASRLRFDTDILALLPADETDEQALLaDQLREGPLSRQILVLI--SGGDPAQLAAAARALAAALR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 85 SSNLFAEVGTDaITTLIPELALHVAGNLPILFSSQEleqmiAPRLEKRFIGQRFEDILLKLSSLEGIGQSQLLQSDPLGF 164
Cdd:COG4258 89 ASGLFASVQNG-IPADLEALRDFLFPHRYLLLPAAD-----RERLTADGLRAALQDRLDQLYSPAGGVSKQLLLRDPLGL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 165 MEPIMAKMAMLTPlpGTSIYKGFVFSPDRRHLLVTARPGSAGSNTASARQIAELLDDLSTGLTNKYSSsgitPILTPVGA 244
Cdd:COG4258 163 SRRLLEKLQPLGS--RPRLRDGVLVSRDGTWALLLAETRASGFDTDAQQQLVAALRAAFAALNAAFPG----AQLLLTGA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 245 YRAALDNESIIRHDVNLALALSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLFHQSISIMVLGFGGAIISIT 324
Cdd:COG4258 237 GLFAVAAAQQIKHDISTIGLISLLGILLLLLLVFRSLRPLLLGLLPVAVGALAGLAAVSLVFGSVHGITLGFGSSLIGVA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 325 VDHGIAYLLFLDRPQETKGKEASSEVRAIGILAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFLFVHFIFPRITPS 404
Cdd:COG4258 317 VDYSLHYLTHRRAAGEWDPRAALRRIWPTLLLGLLTTVLGYLALLFSPFPGLRQLGVFAAAGLLAAALTTLLWLPLLLPR 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 405 MAAASRQNLP--LRRFVDTLYSTGRPGAIAATLLAASLLFF-ARPDFNVSLESMNTVSSETRAADSLFSMVWGDMGTKVV 481
Cdd:COG4258 397 AAPRPPAPALalLARLLARWPRRLRWLLALLAVLALASLLGlNRLKWNDDLRALNPVPAALLAQEARLRALLGAPDVSQY 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 482 LMTRGEAAE-IQRKNDRILMQIESNMASGTISSAFVPSMIFPGPELAARNFDAWKkfwtkeRHENLQESLSSNGKSLGFA 560
Cdd:COG4258 477 LVVYGPDAEqALQRNEALLPRLDALVAQGAIAGYQSLSRLLPSAATQQARQALLP------DLAALRPRLAEALAGLGFR 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 561 EDAFAHFLRLTGNPQKISSTEIPQ-------KFYKLLGLSKKDSQLTQFITITPGTnyNSDDFYSLYGREGK--LFDGPY 631
Cdd:COG4258 551 PDAFAPFLADLEAARAAPPLTPEDllasplaAALRLLLLGRKDGQWAALVPLRGVD--DAAALRAAAAGLPGvrLVDRKA 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 632 FSEQLAKILFHSFTTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGLMLSIVILGMGID 711
Cdd:COG4258 629 ESSSLFGRYRNDALWLLLLALLLILLLLLLRLRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGID 708
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 918061468 712 YSIFFVRAHQryrvpDHPSFSLVRMAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGIGYS 774
Cdd:COG4258 709 YALFFTEGLL-----DKGELARTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGILLA 766
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
183-774 |
9.68e-35 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 143.08 E-value: 9.68e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 183 IYKGFVFSPDRRHLLVTARPGSAGSNTASARQiaELLDDLSTgLTNKYSSSGITPILTPVGAYRAALDNEsiIRHDVNLA 262
Cdd:COG1033 149 LYVGRLVSPDGKATLIVVTLDPDPLSSDLDRK--EVVAEIRA-IIAKYEDPGVEVYLTGFPVLRGDIAEA--IQSDLAIF 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 263 LALSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLFHQSISIMVLGFGGAIISITVDHGIaYLL--FLDRPQE 340
Cdd:COG1033 224 FPLALLLILLLLFLFFRSLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGI-HLLnrYREERRK 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 341 TKGKEASSE--VRAIGI---LAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFLFVHFIFP------RITPSMAAAS 409
Cdd:COG1033 303 GLDKREALReaLRKLGPpvlLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLLPallsllPRPKPKTRRL 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 410 RQNLPLRRFVDTL--YSTGRPGAIAATLLAASLLFFArpdfnvslesmntVSSETRAADSLFSMVWGDMgtkvvlmtrge 487
Cdd:COG1033 383 KKPPELGRLLAKLarFVLRRPKVILVVALVLAVVSLY-------------GISRLKVEYDFEDYLPEDS----------- 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 488 aaEIQRKNDRIlmqiESNMasGTISSAFVpsMIFPGPELAARNFDAWKkfWTKERHENLqESLSSNGKSLGFAEdaFAHF 567
Cdd:COG1033 439 --PIRQDLDFI----EENF--GGSDPLEV--VVDTGEPDGLKDPEVLK--EIDRLQDYL-ESLPEVGKVLSLAD--LVKE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 568 LRLTGNPQKISSTEIPQ-----KFYKLLGLSKKDSQLTQFITITP------------GTNYNSDDFYSLYGREGKLFDGP 630
Cdd:COG1033 504 LNQALNEGDPKYYALPEsrellAQLLLLLSSPPGDDLSRFVDEDYsaarvtvrlkdlDSEEIKALVEEVRAFLAENFPPD 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 631 YFSEQLA----------KILFHSFTTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGLM 700
Cdd:COG1033 584 GVEVTLTgsavlfaainESVIESQIRSLLLALLLIFLLLLLAFRSLRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAV 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 701 LSIVILGMGIDYSIFFVRAHQRYRVPDHP-------SFSLVRMAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGIGY 773
Cdd:COG1033 664 VASIALGIGVDYTIHFLSRYREERRKGGDleeairrALRTTGKAILFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLV 743
|
.
gi 918061468 774 S 774
Cdd:COG1033 744 A 744
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
3-399 |
1.95e-17 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 87.61 E-value: 1.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 3 NYRLLTVVFIMIFGVTVTAFLRLDIDTDIVRSLPSGQTVISDALEI---FTShpihdQIAIDISVESDNRDILVDCGKY- 78
Cdd:COG1033 402 RPKVILVVALVLAVVSLYGISRLKVEYDFEDYLPEDSPIRQDLDFIeenFGG-----SDPLEVVVDTGEPDGLKDPEVLk 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 79 ----IEEGLRSSNLFAEVgtDAITTLIPELALHVAGNLPILFSSQELEQMIAprlekrfigqrfedillklsslegigqs 154
Cdd:COG1033 477 eidrLQDYLESLPEVGKV--LSLADLVKELNQALNEGDPKYYALPESRELLA---------------------------- 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 155 QLLqsdplgfmepimakmaMLTPLPGTSIYKGFVfSPDRRHLLVTARPGSAGSNTasarqIAELLDDLSTGLTNKYSSSG 234
Cdd:COG1033 527 QLL----------------LLLSSPPGDDLSRFV-DEDYSAARVTVRLKDLDSEE-----IKALVEEVRAFLAENFPPDG 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 235 ITPILTpvGAYRAALDNESIIRHDVNLALALSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLFHQSISIMVL 314
Cdd:COG1033 585 VEVTLT--GSAVLFAAINESVIESQIRSLLLALLLIFLLLLLAFRSLRLGLISLIPNLLPILLTFGLMGLLGIPLNIATA 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 315 GFGGAIISITVDHGIaYLL--FLDRPQETKGKEASSE--VRAIG---ILAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGV 387
Cdd:COG1033 663 VVASIALGIGVDYTI-HFLsrYREERRKGGDLEEAIRraLRTTGkaiLFTSLTLAAGFGVLLFSSFPPLADFGLLLALGL 741
|
410
....*....|..
gi 918061468 388 LLSFLFVHFIFP 399
Cdd:COG1033 742 LVALLAALLLLP 753
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
621-772 |
4.82e-17 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 86.43 E-value: 4.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 621 GREGKLFDGPYFSEQLAKILFHSFTTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGLM 700
Cdd:TIGR00921 172 GKFLDVTGSPAINYDIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 701 LSIVILGMGIDYSIFFvraHQRY-------RVPDHPSFSLVR---MAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLG 770
Cdd:TIGR00921 252 AVPMLIGVGIDYGIQT---LNRYeeerdigRAKGEAIVTAVRrtgRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAG 328
|
..
gi 918061468 771 IG 772
Cdd:TIGR00921 329 LI 330
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
247-774 |
1.81e-13 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 75.03 E-value: 1.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 247 AALDNE--SIIRHDVNLALALSMAGIGLLLFVAFPRP------LLGLFSLLPALAGTAsALCIFSLFHQSISIMVLgfgg 318
Cdd:TIGR03480 257 VALSDEelATVSEGATVAGLLSFVLVLVLLWLALRSPrlvfavLVTLIVGLILTAAFA-TLAVGHLNLISVAFAVL---- 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 319 aIISITVDHGIAY------LLFLDRPQETKGKEASSEVRAIGILAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFL 392
Cdd:TIGR03480 332 -FIGLGVDFAIQFslryreERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYKGVSELGIIAGTGMFIALF 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 393 FVHFIFP---RITPSMAAASRQNLPLRRFVDTLYSTGRPGAIAATLLAASLLF----FARPDFNV------SLESMNTV- 458
Cdd:TIGR03480 411 VTLTVLPallRLLRPPRRRKPPGYATLAPLDAFLRRHRRPVLGVTLILGIAALallpQLRFDFNPlnlqdpKTESVRTFl 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 459 -----------SSETRAADSLFSMVWGDMGTKV--VLMTRGEAAEIQRKNDRILMQIEsNMASgTISSAFVPSMIFPGPE 525
Cdd:TIGR03480 491 elladpdtspySAEVLAPSAPEARALTERLEALpeVDQVVTLPDFVPDDQEAKLALIA-DLAL-VLGPTLNPGEADPAPS 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 526 LAArNFDAWKKFwtkerHENLQESLSSNGKSLGFAEDAFA-HFLRLTGNPQkiSSTEIPQKFYK--LLGLSKKDSQLTQF 602
Cdd:TIGR03480 569 AEE-VAAALRRL-----AARLRAAAAKSQDPDAAAAGRLAaSLDRLLAKAP--AQAATLRALQGalLAGLPGELDRLRDS 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 603 ITITPGTNYN-SDDFYSLY----GR-------EGKLFD--------------------GPYFSEQLAKILFHSFTTMLAI 650
Cdd:TIGR03480 641 LQAEPVTLEDlPPDLRRRWvakdGRarlevfpKEDLNDnealrrfvravrkvapdatgAPVSILESGDTVVGAFLQAFIY 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 651 IAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGLMLSIVILGMGIDYSIFFVRAHQRYRVPDHPS 730
Cdd:TIGR03480 721 ALVAITVLLLLTLRRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDSGNLL 800
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 918061468 731 FSLVRMAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGIGYS 774
Cdd:TIGR03480 801 QSSTARAVFFSALTTATAFGSLAVSSHPGTASMGILLSLGLGLT 844
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
184-771 |
6.37e-13 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 72.95 E-value: 6.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 184 YKGFVFSPDRRHLLVTARPGSAgsntASARQIAELLDDLSTGLTNKYSSSGITPILTpvGAYRAALDNESIIRHDVNLAL 263
Cdd:TIGR00921 126 SKEMFLSKDHTVAIIIVQLKSD----ADYKQVVPIYNDVERSLERTNPPSGKFLDVT--GSPAINYDIEREFGKDMGTTM 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 264 ALSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLFHQSISIMVLGFGGAIISITVDHGIAyllFLDRPQETKG 343
Cdd:TIGR00921 200 AISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQ---TLNRYEEERD 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 344 KEASSE------VRAIG---ILAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFLFVHFIFPRITPSMAAASRQNLP 414
Cdd:TIGR00921 277 IGRAKGeaivtaVRRTGravLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKVKK 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 415 LRRFVdtlysTGRPGAIAATLLAASLLFFARP---------DFNVSLESMNTVSSETR-------------AADSLFSMV 472
Cdd:TIGR00921 357 EIIAI-----GGKSSEIEEELSKVLSITVRHPvpalvaaliITGLGLYGAAGIKPEVNiekfipqdlpslqARKVIESHM 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 473 WG--DMGTKVVLMTRGEAAEIQRKNDRILMQIESNMASGTISSAfvPSMI--------FPGPElaarnfdawKKFWTKER 542
Cdd:TIGR00921 432 GGshDFATILVKADDVRDPELVRFMDELSRDIKATGVAARVFGA--PSIIdlvkevegLPAPE---------RSALEPIP 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 543 HENLQESLSSNGKSLGFaedafahflrltgnpqkiSSTEIPQKFYKLLGlsKKDSQLTQFITITPGTNYNsddfyslygr 622
Cdd:TIGR00921 501 EDEEGGYISGGQIKVAV------------------IQVQLKQGEPKVQG--RKILRDVQHEHPPPGVKVG---------- 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 623 egkLFDGPYFSEQLAKILFHSFTTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGhsldIPGLMLS 702
Cdd:TIGR00921 551 ---VTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRG----IPSFLAM 623
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 918061468 703 IV----ILGMGIDYSIFFVRAHQRYRVPDHPSFSLVRM------AVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGI 771
Cdd:TIGR00921 624 ATtisiILGLGMDYSIHLAERYFEERKEHGPKEAITHTmertgpGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGV 702
|
|
| Methyltransf_23 |
pfam13489 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
834-995 |
1.67e-12 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 404385 [Multi-domain] Cd Length: 162 Bit Score: 66.30 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 834 DLPQLLAADRDSVKTILDIGCGYGVpgcWCLEYFPE-SRVFGLDPDGERVRVAALAMgeqgeILEDMAPDLPIVPN-PPD 911
Cdd:pfam13489 11 DLLLRLLPKLPSPGRVLDFGCGTGI---FLRLLRAQgFSVTGVDPSPIAIERALLNV-----RFDQFDEQEAAVPAgKFD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 912 LILLLDMLHYLDDksILILFQKCFQMLNDQGLLVtrFVIRPNGVPSWSWKLEDRRVRFSGGEAHYRTAQRMAHLLEKTGF 991
Cdd:pfam13489 83 VIVAREVLEHVPD--PPALLRQIAALLKPGGLLL--LSTPLASDEADRLLLEWPYLRPRNGHISLFSARSLKRLLEEAGF 158
|
....
gi 918061468 992 RIET 995
Cdd:pfam13489 159 EVVS 162
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
833-945 |
1.82e-12 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 65.04 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 833 TDLPQLLAADRDSVKTILDIGCGYGvpgcWCLEYFPES--RVFGLDPDGERVRVAALAMGEQG-EILEDMAPDLPIVPNP 909
Cdd:COG2227 12 RRLAALLARLLPAGGRVLDVGCGTG----RLALALARRgaDVTGVDISPEALEIARERAAELNvDFVQGDLEDLPLEDGS 87
|
90 100 110
....*....|....*....|....*....|....*.
gi 918061468 910 PDLILLLDMLHYLDDksILILFQKCFQMLNDQGLLV 945
Cdd:COG2227 88 FDLVICSEVLEHLPD--PAALLRELARLLKPGGLLL 121
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
849-942 |
1.58e-11 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 61.43 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 849 ILDIGCGYGVPGCWCLEYFpESRVFGLDPDGERVRVAALAMGEQG---EILEDMAPDLPIVPNPPDLILLLDMLHYLDDK 925
Cdd:pfam13649 1 VLDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGlnvEFVQGDAEDLPFPDGSFDLVVSSGVLHHLPDP 79
|
90
....*....|....*..
gi 918061468 926 SILILFQKCFQMLNDQG 942
Cdd:pfam13649 80 DLEAALREIARVLKPGG 96
|
|
| Tam |
COG4106 |
Trans-aconitate methyltransferase [Energy production and conversion]; |
848-945 |
3.64e-10 |
|
Trans-aconitate methyltransferase [Energy production and conversion];
Pssm-ID: 443282 [Multi-domain] Cd Length: 100 Bit Score: 57.91 E-value: 3.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 848 TILDIGCGYGVPGCWCLEYFPESRVFGLDPDGERVRVAALAMGEQGEILEDMApDLPIvPNPPDLILLLDMLHYLDDksI 927
Cdd:COG4106 4 RVLDLGCGTGRLTALLAERFPGARVTGVDLSPEMLARARARLPNVRFVVADLR-DLDP-PEPFDLVVSNAALHWLPD--H 79
|
90
....*....|....*...
gi 918061468 928 LILFQKCFQMLNDQGLLV 945
Cdd:COG4106 80 AALLARLAAALAPGGVLA 97
|
|
| COG4976 |
COG4976 |
Predicted methyltransferase, contains TPR repeat [General function prediction only]; |
834-994 |
8.46e-10 |
|
Predicted methyltransferase, contains TPR repeat [General function prediction only];
Pssm-ID: 444001 [Multi-domain] Cd Length: 181 Bit Score: 59.24 E-value: 8.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 834 DLPQLLAAD------RDSVKTILDIGCGYGVpgcwCLEYFPE--SRVFGLDPDGERVRVAAlAMGEQGEILEDMAPDLPI 905
Cdd:COG4976 29 EAPALLAEEllarlpPGPFGRVLDLGCGTGL----LGEALRPrgYRLTGVDLSEEMLAKAR-EKGVYDRLLVADLADLAE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 906 VPNPPDLILLLDMLHYLDDksiLI-LFQKCFQMLNDQGLLVtrFVIRPngvpswswklEDRRVRFSGGEAHYRtaqrmaH 984
Cdd:COG4976 104 PDGRFDLIVAADVLTYLGD---LAaVFAGVARALKPGGLFI--FSVED----------ADGSGRYAHSLDYVR------D 162
|
170
....*....|
gi 918061468 985 LLEKTGFRIE 994
Cdd:COG4976 163 LLAAAGFEVP 172
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
649-772 |
1.46e-09 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 62.29 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 649 AIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGLM-----LSIVILGMGIDYSIFFV-RAHQR 722
Cdd:TIGR00833 180 ATTGIIVLIILLLVYRSPITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAqttvlLTALVIGAGTDYAVFLTgRYHEE 259
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 918061468 723 YRVPDHPSFSLVRM------AVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGIG 772
Cdd:TIGR00833 260 RRKGESLEEAAAEAlrgtgkAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVL 315
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
629-781 |
2.47e-09 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 61.32 E-value: 2.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 629 GPYFSEQLAKILFHSFTTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGL---MLSIVI 705
Cdd:COG2409 156 PAALAADLNEAFEEDLGRAELITLPVALVVLLLVFRSLVAALLPLLTAGLAVGVALGLLALLAAFTDVSSFapnLLTMLG 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 706 LGMGIDYSIFFVRahqRYR-----VPDHPSfSLVRM------AVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGIGYS 774
Cdd:COG2409 236 LGVGIDYALFLVS---RYReelraGEDREE-AVARAvatagrAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVA 311
|
....*..
gi 918061468 775 LLGAFLL 781
Cdd:COG2409 312 VLAALTL 318
|
|
| Methyltransf_12 |
pfam08242 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
850-944 |
2.98e-09 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 400515 [Multi-domain] Cd Length: 98 Bit Score: 55.07 E-value: 2.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 850 LDIGCGYGVPGCWCLEYFPESRVFGLDPDGERVRVAALAMGEQG----EILEDMAPDLPIVPNPP-DLILLLDMLHYLDD 924
Cdd:pfam08242 1 LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGllnaVRVELFQLDLGELDPGSfDVVVASNVLHHLAD 80
|
90 100
....*....|....*....|
gi 918061468 925 ksILILFQKCFQMLNDQGLL 944
Cdd:pfam08242 81 --PRAVLRNIRRLLKPGGVL 98
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
265-401 |
2.42e-08 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 57.92 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 265 LSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLFHQSISIMVLGFGGAIISITVDHGIAYL-LFLDRPQETKG 343
Cdd:TIGR00921 575 AGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRGIPSFLAMATTISIILGLGMDYSIHLAeRYFEERKEHGP 654
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 918061468 344 KEA---SSEVRAIGILA-VLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFLFVHFIFPRI 401
Cdd:TIGR00921 655 KEAithTMERTGPGILFsGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPAL 716
|
|
| Cfa |
COG2230 |
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ... |
848-945 |
3.46e-08 |
|
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];
Pssm-ID: 441831 [Multi-domain] Cd Length: 158 Bit Score: 53.78 E-value: 3.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 848 TILDIGCGYGVPGCWCLEYFpESRVFGLDPDGERV-----RVAALAMGEQGEI-LEDMApDLPIvPNPPDLILLLDMLHY 921
Cdd:COG2230 54 RVLDIGCGWGGLALYLARRY-GVRVTGVTLSPEQLeyareRAAEAGLADRVEVrLADYR-DLPA-DGQFDAIVSIGMFEH 130
|
90 100
....*....|....*....|....
gi 918061468 922 LDDKSILILFQKCFQMLNDQGLLV 945
Cdd:COG2230 131 VGPENYPAYFAKVARLLKPGGRLL 154
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
822-945 |
4.57e-07 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 51.46 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 822 ARFKLQSDPMFTDLPQLLAaDRDSVKTILDIGCGYGVPGCWCLEYFpESRVFGLDPDGERVRVAALAMGEQGE-----IL 896
Cdd:COG0500 4 SYYSDELLPGLAALLALLE-RLPKGGRVLDLGCGTGRNLLALAARF-GGRVIGIDLSPEAIALARARAAKAGLgnvefLV 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 918061468 897 EDMAPDLPIVPNPPDLILLLDMLHYLDDKSILILFQKCFQMLNDQGLLV 945
Cdd:COG0500 82 ADLAELDPLPAESFDLVVAFGVLHHLPPEEREALLRELARALKPGGVLL 130
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
234-413 |
9.08e-07 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 53.05 E-value: 9.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 234 GITPILTPVGAYRAalDNESIIRHDVNLALALSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLFHQSISIMV 313
Cdd:TIGR00833 152 GLTVHVTGPLATIA--DILESGDKDMNRITATTGIIVLIILLLVYRSPITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGV 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 314 LGFG-GAIISITVDHGIAYLLFL-DRPQETKGKEASSE------VRAIG--IL-AVLTTCGAFLTLSFSGFPIFVQLGQF 382
Cdd:TIGR00833 230 NAQTtVLLTALVIGAGTDYAVFLtGRYHEERRKGESLEeaaaeaLRGTGkaILgSALTVAVAFLALSLARLPSFKTLGVS 309
|
170 180 190
....*....|....*....|....*....|.
gi 918061468 383 TAMGVLLSFLFVHFIFPRItpsMAAASRQNL 413
Cdd:TIGR00833 310 CAVGVLVALLNAVTLTPAL---LTLEGREGL 337
|
|
| Methyltransf_11 |
pfam08241 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
850-945 |
1.08e-06 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 462406 [Multi-domain] Cd Length: 94 Bit Score: 47.66 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 850 LDIGCGYGVPGCWCLEYFPesRVFGLDPDGERVRVAALAMGEQGE--ILEDMApDLPIVPNPPDLILLLDMLHYLDDKSi 927
Cdd:pfam08241 1 LDVGCGTGLLTELLARLGA--RVTGVDISPEMLELAREKAPREGLtfVVGDAE-DLPFPDNSFDLVLSSEVLHHVEDPE- 76
|
90
....*....|....*...
gi 918061468 928 lILFQKCFQMLNDQGLLV 945
Cdd:pfam08241 77 -RALREIARVLKPGGILI 93
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
645-771 |
1.14e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 51.91 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 645 TTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPG-----LMLSIVILGMGIDYSIFFVRA 719
Cdd:pfam03176 145 GLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILAHILGIGLstfalNLLVVLLIAVGTDYALFLVSR 224
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 918061468 720 HQRYRVPDHPSFSLVR-------MAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGI 771
Cdd:pfam03176 225 YREELRAGEDREEAVIravrgtgKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGV 283
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
847-953 |
2.31e-06 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 48.07 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 847 KTILDIGCGYGvpgcWCLEYFPE--SRVFGLDPDGERVRVAALAMGEQGEILE----DMApDLPIVPNPPDLILLLDMLH 920
Cdd:COG2226 24 ARVLDLGCGTG----RLALALAErgARVTGVDISPEMLELARERAAEAGLNVEfvvgDAE-DLPFPDGSFDLVISSFVLH 98
|
90 100 110
....*....|....*....|....*....|...
gi 918061468 921 YLDDKsiLILFQKCFQMLNDQGLLVTRFVIRPN 953
Cdd:COG2226 99 HLPDP--ERALAEIARVLKPGGRLVVVDFSPPD 129
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
172-417 |
6.40e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 49.60 E-value: 6.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 172 MAMLTPLPGTSIYKGFVFSPDRRHLLVTAR-PGSAGSNTA--SARQIAELLDDLSTGltnkyssSGITPILTPVGAYRAa 248
Cdd:pfam03176 63 VGSVQDFWGDPDTAALFVSPDGKAAYVVVTlEGDPGTTEAdeSVAAVRDAVEQAPPP-------EGLKAYLTGPAATVA- 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 249 lDNESIIRHDVNLALALSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLF----HQSISIMVLGFGGAIIsIT 324
Cdd:pfam03176 135 -DLRDAGDRDLGLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLVAILahilGIGLSTFALNLLVVLL-IA 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 325 VdhGIAYLLFL-DRPQETKGKEASSE------VRAIG---ILAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFLFV 394
Cdd:pfam03176 213 V--GTDYALFLvSRYREELRAGEDREeaviraVRGTGkvvTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAA 290
|
250 260
....*....|....*....|...
gi 918061468 395 HFIFPRItpsMAAASRQNLPLRR 417
Cdd:pfam03176 291 LTLLPAL---LALLGRWGLWPPK 310
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
188-392 |
1.86e-05 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 48.61 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 188 VFSPDRRHLLVTARPgSAGSNTASARQIAELLDDLStgltnKYSSSGITPILTpvGAYRAALDNESIIRHDVNLALALSM 267
Cdd:COG2409 108 LVSEDGKAALVTVTL-DGDAGDEAAEAVDALRDAVA-----AAPAPGLTVYVT--GPAALAADLNEAFEEDLGRAELITL 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 268 AGIGLLLFVAFPRPLLGLFSLLPALAGTASALCI-------FSLFHQSISIM-VLGFGGAIisitvDHGiayLLFLDRPQ 339
Cdd:COG2409 180 PVALVVLLLVFRSLVAALLPLLTAGLAVGVALGLlallaafTDVSSFAPNLLtMLGLGVGI-----DYA---LFLVSRYR 251
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 918061468 340 ETKGKEASSE---VRAIG------ILAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFL 392
Cdd:COG2409 252 EELRAGEDREeavARAVAtagravLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVL 313
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
848-950 |
2.02e-05 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 44.34 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 848 TILDIGCGYGVPGCWcLEYFPESRVFGLDPDGERVRVAALAMGEQGE-----ILEDMAPDLPIVPNPPDLILLLDMLHYL 922
Cdd:cd02440 1 RVLDLGCGTGALALA-LASGPGARVTGVDISPVALELARKAAAALLAdnvevLKGDAEELPPEADESFDVIISDPPLHHL 79
|
90 100
....*....|....*....|....*...
gi 918061468 923 DDkSILILFQKCFQMLNDQGLLVTRFVI 950
Cdd:cd02440 80 VE-DLARFLEEARRLLKPGGVLVLTLVL 106
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
643-781 |
8.94e-05 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 46.38 E-value: 8.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 643 SFTTMLAIIAIsiVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLIGHSLDIPGLMLSIVILGMGIDYSIFFVRAHQR 722
Cdd:COG4258 252 STIGLISLLGI--LLLLLLVFRSLRPLLLGLLPVAVGALAGLAAVSLVFGSVHGITLGFGSSLIGVAVDYSLHYLTHRRA 329
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 723 YRVPDH-PSFSLVRMAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGIGYSLLGAFLL 781
Cdd:COG4258 330 AGEWDPrAALRRIWPTLLLGLLTTVLGYLALLFSPFPGLRQLGVFAAAGLLAAALTTLLW 389
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
240-392 |
4.58e-04 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 44.22 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 240 TPVGAYRAAldneSIIRHDVNLALALSMAGIGLLLFVAFPRPLLGLFSLLPALAGTASALCIFSLFHQSI---SIMVLGF 316
Cdd:TIGR03480 699 APVSILESG----DTVVGAFLQAFIYALVAITVLLLLTLRRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFnfaNIIALPL 774
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 918061468 317 ggaIISITVDHGIAYLLFLDRPQETKGKEASSEVRAIgILAVLTTCGAFLTLSFSGFPIFVQLGQFTAMGVLLSFL 392
Cdd:TIGR03480 775 ---LLGLGVDFGIYMVHRWRNGVDSGNLLQSSTARAV-FFSALTTATAFGSLAVSSHPGTASMGILLSLGLGLTLL 846
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
646-771 |
5.09e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 44.19 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 646 TMLAIIAISIVVLLLFFFASWQLTLITLIPPLF-SYICTLGTMKLIG-HSLDIPG-----LMLSIVILGMGIDYSIFFVr 718
Cdd:TIGR00833 747 GLISIITLAIVFMILALLLRAPVAPIVLIGSVAlSYLWALGLSVLAFqHILGAELhwsvlAGVFVLLVALGVDYNMLLV- 825
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 918061468 719 ahQRYR--VPDHPSFSLVR------MAVFMAGASTVIGFGVLCLAEHSLLRSIGVTSLLGI 771
Cdd:TIGR00833 826 --SRIKeeSPAGNRTGIIRalgstgGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGI 884
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
847-910 |
8.48e-04 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 41.42 E-value: 8.48e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 918061468 847 KTILDIGCGYGVPGCWCLEYFPESRVFGLDPDGERVRVA----ALAMGEQGEI--------LEDMAPDLpIVPNPP 910
Cdd:pfam05175 33 GKVLDLGCGAGVLGAALAKESPDAELTMVDINARALESArenlAANGLENGEVvasdvysgVEDGKFDL-IISNPP 107
|
|
| TrmR |
COG4122 |
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ... |
847-945 |
1.00e-03 |
|
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443298 Cd Length: 173 Bit Score: 40.94 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 847 KTILDIGCGYGVPGCWCLEYFPE-SRVFGLDPDGERVRVAALAMGEQG-----EILEDMAPD-LPIVPNPP-DLILL-LD 917
Cdd:COG4122 18 KRILEIGTGTGYSTLWLARALPDdGRLTTIEIDPERAAIARENFARAGladriRLILGDALEvLPRLADGPfDLVFIdAD 97
|
90 100
....*....|....*....|....*...
gi 918061468 918 MLHYLDDksililFQKCFQMLNDQGLLV 945
Cdd:COG4122 98 KSNYPDY------LELALPLLRPGGLIV 119
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
640-724 |
1.64e-03 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 42.45 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 640 LFHSFTTMLAIIAISIVVLLLFFFASWQLTLITLIPPLFSYICTLGTMKLI---GHSL---DIPGLM-----LSIVIL-G 707
Cdd:COG2409 515 LADDLPLVIPVVLGLIFLLLLLLFRSVVAPLKAVLTNLLSLGAALGVLVLVfqhGWLLlgfTPGPLDsfvplLLFVILfG 594
|
90
....*....|....*...
gi 918061468 708 MGIDYSIFFV-RAHQRYR 724
Cdd:COG2409 595 LGMDYEVFLVsRIREEYD 612
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
838-950 |
1.83e-03 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 40.56 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 838 LLAA-DRDSVKTILDIGCGYGVPGCWCLEYFPESRVFGLD---------------PDGERVRVAAlamGEQGEILEDMAP 901
Cdd:COG2813 41 LLEHlPEPLGGRVLDLGCGYGVIGLALAKRNPEARVTLVDvnaravelaranaaaNGLENVEVLW---SDGLSGVPDGSF 117
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 918061468 902 DLpIVPNPPdlillldmLH--YLDDKSIL-ILFQKCFQMLNDQGLLvtRFVI 950
Cdd:COG2813 118 DL-ILSNPP--------FHagRAVDKEVAhALIADAARHLRPGGEL--WLVA 158
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
649-714 |
5.74e-03 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 40.86 E-value: 5.74e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918061468 649 AIIAISIVVLLLFFF-ASWQLTLITL--IPplFSYICTLGTMKLIGHSLDIPGLM-LSIVIlGMGIDYSI 714
Cdd:COG0841 337 LLEAILLVVLVVFLFlRSWRATLIPAvaIP--VSLIGTFAVMYLLGFSLNILTLFaLVLAI-GIVVDDAI 403
|
|
| |
