|
Name |
Accession |
Description |
Interval |
E-value |
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
18-650 |
0e+00 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 620.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 18 RIADAReRLLSIGTLPDETVRSVIKASWQRCVSKEVNPLVAKQAIDLKSAQLEKIRAAHQELICASETIMRDAHDLLAQS 97
Cdd:COG3284 6 HLREAR-WFLSGGRLPAGGVRPLIARSWQRCREYGLDPDRPPAPRVLSGAELRELRERNEELLRAARPVLERLYEQLAGS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 98 GTIMHLVAPSGVILRSHGDPKTLELANQFRLVPGANWAESVAGTNAIGTALRIGSPVQVHAYEHFCANISNWTCSAAVIR 177
Cdd:COG3284 85 GSVVLLTDADGVILDTLGDPRFLDRARRVGLAPGADWSEEARGTNAIGTALAEGRPVTVHGAEHFLEANHGLTCSAAPIF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 178 DPfENKVLGAVNISGLKNTQHDYCLALAVSGAHRIEGQLAHLLLSKRELLLGETLGRFTSPGNDGLLLMDLEGRLVRGNG 257
Cdd:COG3284 165 DP-DGRLLGVLDISGPARSSQPHTLALVRAAARRIENRLFLRSFRREWRLRLHFLPEFLGSLSEGLLAFDEDGRIVAANR 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 258 HAERVLAAHGIKLDLTPYSPVLSLngegrlapRVELILPRLAREW--IEPVRHRGETIGYFAVIPFPRPRTTRvekddKR 335
Cdd:COG3284 244 AARRLLGLADAALLGRPLEELFGL--------DLEALPDGARRAPasPRPLRLRDGRRLGALLRLRPARRAAR-----AA 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 336 TQETTRHAGFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAG 415
Cdd:COG3284 311 PAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIES 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 416 ELFGYVEGAFTGARRGGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTE 495
Cdd:COG3284 391 ELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRE 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 496 EVAAGRFRMDLYYRISSMTLTLPALRErRGDTTLLAEHILARLVEQHGGVpkRLSLDLQTALEGHSWPGNIRELSNLVTA 575
Cdd:COG3284 471 LVAAGRFREDLYYRLNGLTLTLPPLRE-REDLPALIEHLLRELAAGRGPL--RLSPEALALLAAYPWPGNVRELRNVLRT 547
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 919187881 576 AYFLCDGGELTPADLPVTL---CASAARVEEASDHPLESAEKAVIAEVILEQGGNLTRAAKALNIAKSTLYSKLKKYD 650
Cdd:COG3284 548 ALALADGGVITVEDLPDELraeLAAAAPAAAAPLTSLEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
348-516 |
1.61e-88 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 272.74 E-value: 1.61e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 348 LIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGAFTG 427
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 428 ARRGGMtGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRMDLY 507
Cdd:pfam00158 81 ADSDRK-GLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 919187881 508 YRISSMTLT 516
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
325-651 |
6.22e-87 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 278.94 E-value: 6.22e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 325 RTTRVEKDDKRTQETTRHAGFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALN 404
Cdd:TIGR02915 118 HLYTLETENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAIN 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 405 CGGLSRDLLAGELFGYVEGAFTGARRGGMtGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFR 484
Cdd:TIGR02915 198 CAAIPENLLESELFGYEKGAFTGAVKQTL-GKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVR 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 485 LIAATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTALEGHSWPG 564
Cdd:TIGR02915 277 IVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 565 NIRELSNLVTAAYFLCDGGELTPADLPVTLCASAARVEEASDHPL-ESAEKAVIAEVILEQGGNLTRAAKALNIAKSTLY 643
Cdd:TIGR02915 357 NVRELENKVKRAVIMAEGNQITAEDLGLDARERAETPLEVNLREVrERAEREAVRKAIARVDGNIARAAELLGITRPTLY 436
|
....*...
gi 919187881 644 SKLKKYDL 651
Cdd:TIGR02915 437 DLMKKHGI 444
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
324-648 |
1.16e-85 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 278.53 E-value: 1.16e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 324 PRTTRVEKDDKRTQETTRHAGfsRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGA---- 399
Cdd:PRK15424 199 TLRHNTHYATRNALRTRYVLG--DLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDArqgk 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 400 ----FIALNCGGLSRDLLAGELFGYVEGAFTGARRGGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGE 475
Cdd:PRK15424 277 kshpFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGG 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 476 TRPRKVNFRLIAATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVeqhGGVPKRLSLDL-- 553
Cdd:PRK15424 357 HQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSL---AALSAPFSAALrq 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 554 -----QTALEGHSWPGNIRELSNLVTA-AYFLCDGGE--LTPADLpvtLCASAARVEEASDHPLESAEKAVIAEVILEQG 625
Cdd:PRK15424 434 glqqcETLLLHYDWPGNVRELRNLMERlALFLSVEPTpdLTPQFL---QLLLPELARESAKTPAPRLLAATLQQALERFN 510
|
330 340
....*....|....*....|...
gi 919187881 626 GNLTRAAKALNIAKSTLYSKLKK 648
Cdd:PRK15424 511 GDKTAAANYLGISRTTLWRRLKA 533
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
353-512 |
1.51e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 91.44 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 353 PLFLKTVQQAQRLAKAPIP--ILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEgaftgarR 430
Cdd:cd00009 1 VGQEEAIEALREALELPPPknLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL-------V 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 431 GGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEicrvgETRPRKVNFRLIAATNRDLteevaAGRFRMDLYYRI 510
Cdd:cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN-----DLRIDRENVRVIGATNRPL-----LGDLDRALYDRL 143
|
..
gi 919187881 511 SS 512
Cdd:cd00009 144 DI 145
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
369-509 |
5.48e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.46 E-value: 5.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 369 PIPILLQGETGVGKELFANAMH-EAGPHCEGaFIALNCGGL---SRDLLAGELFGYVEGAFTGARR-GGMTGKIEAANGG 443
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALArELGPPGGG-VIYIDGEDIleeVLDQLLLIIVGGKKASGSGELRlRLALALARKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 919187881 444 TLFLDEIGEMPLDLQplfLRVLQELEICRVGETRPRKVNFRLIAATNR--DLTEEVAAGRFRMDLYYR 509
Cdd:smart00382 81 VLILDEITSLLDAEQ---EALLLLLEELRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLL 145
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
18-650 |
0e+00 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 620.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 18 RIADAReRLLSIGTLPDETVRSVIKASWQRCVSKEVNPLVAKQAIDLKSAQLEKIRAAHQELICASETIMRDAHDLLAQS 97
Cdd:COG3284 6 HLREAR-WFLSGGRLPAGGVRPLIARSWQRCREYGLDPDRPPAPRVLSGAELRELRERNEELLRAARPVLERLYEQLAGS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 98 GTIMHLVAPSGVILRSHGDPKTLELANQFRLVPGANWAESVAGTNAIGTALRIGSPVQVHAYEHFCANISNWTCSAAVIR 177
Cdd:COG3284 85 GSVVLLTDADGVILDTLGDPRFLDRARRVGLAPGADWSEEARGTNAIGTALAEGRPVTVHGAEHFLEANHGLTCSAAPIF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 178 DPfENKVLGAVNISGLKNTQHDYCLALAVSGAHRIEGQLAHLLLSKRELLLGETLGRFTSPGNDGLLLMDLEGRLVRGNG 257
Cdd:COG3284 165 DP-DGRLLGVLDISGPARSSQPHTLALVRAAARRIENRLFLRSFRREWRLRLHFLPEFLGSLSEGLLAFDEDGRIVAANR 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 258 HAERVLAAHGIKLDLTPYSPVLSLngegrlapRVELILPRLAREW--IEPVRHRGETIGYFAVIPFPRPRTTRvekddKR 335
Cdd:COG3284 244 AARRLLGLADAALLGRPLEELFGL--------DLEALPDGARRAPasPRPLRLRDGRRLGALLRLRPARRAAR-----AA 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 336 TQETTRHAGFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAG 415
Cdd:COG3284 311 PAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIES 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 416 ELFGYVEGAFTGARRGGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTE 495
Cdd:COG3284 391 ELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRE 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 496 EVAAGRFRMDLYYRISSMTLTLPALRErRGDTTLLAEHILARLVEQHGGVpkRLSLDLQTALEGHSWPGNIRELSNLVTA 575
Cdd:COG3284 471 LVAAGRFREDLYYRLNGLTLTLPPLRE-REDLPALIEHLLRELAAGRGPL--RLSPEALALLAAYPWPGNVRELRNVLRT 547
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 919187881 576 AYFLCDGGELTPADLPVTL---CASAARVEEASDHPLESAEKAVIAEVILEQGGNLTRAAKALNIAKSTLYSKLKKYD 650
Cdd:COG3284 548 ALALADGGVITVEDLPDELraeLAAAAPAAAAPLTSLEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
240-651 |
3.21e-154 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 452.30 E-value: 3.21e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 240 NDGLLLMDLEGRLVRGNGHAERVLaahGIK---------LDLTPYSPVLSLNGEGRlapRVELILPRLAREWIE------ 304
Cdd:COG3829 21 DDGIIVVDADGRITYVNRAAERIL---GLPreevigknvTELIPNSPLLEVLKTGK---PVTGVIQKTGGKGKTvivtai 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 305 PVRHRGETIGYFAVIPFPRPRTTRVEKDDKRTQETTRHA--GFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGK 382
Cdd:COG3829 95 PIFEDGEVIGAVETFRDITELKRLERKLREEELERGLSAkyTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 383 ELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGAFTGARRGGMTGKIEAANGGTLFLDEIGEMPLDLQPLFL 462
Cdd:COG3829 175 ELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIGEMPLSLQAKLL 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 463 RVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQH 542
Cdd:COG3829 255 RVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKY 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 543 GGVPKRLSLDLQTALEGHSWPGNIRELSNLVTAAYFLCDGGELTPADLPVTLCASAARVEEASDHPL----ESAEKAVIA 618
Cdd:COG3829 335 GKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAEAASAAEEGSLkealEEVEKELIE 414
|
410 420 430
....*....|....*....|....*....|...
gi 919187881 619 EVILEQGGNLTRAAKALNIAKSTLYSKLKKYDL 651
Cdd:COG3829 415 EALEKTGGNKSKAAKALGISRSTLYRKLKKYGI 447
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
334-650 |
1.12e-116 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 355.04 E-value: 1.12e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 334 KRTQETTRHAGFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLL 413
Cdd:COG2204 119 ERRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELL 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 414 AGELFGYVEGAFTGARRGGMtGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDL 493
Cdd:COG2204 199 ESELFGHEKGAFTGAVARRI-GKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDL 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 494 TEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHgGVPKRLSLDLQTALEGHSWPGNIRELSNLV 573
Cdd:COG2204 278 EELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAEL-GKPVKLSPEALEALLAYDWPGNVRELENVI 356
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 919187881 574 TAAYFLCDGGELTPADLPVTlcasaarveeasdhpLESAEKAVIAEVILEQGGNLTRAAKALNIAKSTLYSKLKKYD 650
Cdd:COG2204 357 ERAVILADGEVITAEDLPEA---------------LEEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
344-653 |
1.06e-89 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 288.24 E-value: 1.06e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 344 GFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEG 423
Cdd:COG3283 202 GFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPG 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 424 AFtGARRGGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFR 503
Cdd:COG3283 282 AF-GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFR 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 504 MDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTALEGHSWPGNIRELSNLVTAAYFLCDGG 583
Cdd:COG3283 361 EDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGD 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 584 ELTPAD--LPvTLCASAARVEEASDHPLESAEKAVIAEVileqggnLTR----------AAKALNIAKSTLYSKLKKYDL 651
Cdd:COG3283 441 ELTPEDlqLP-EYAASAGLLDDLLEGSLDEIVKRFERSL-------LRRlypsypstrkLAKRLGVSHTAIANKLREYGI 512
|
..
gi 919187881 652 PR 653
Cdd:COG3283 513 GK 514
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
348-516 |
1.61e-88 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 272.74 E-value: 1.61e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 348 LIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGAFTG 427
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 428 ARRGGMtGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRMDLY 507
Cdd:pfam00158 81 ADSDRK-GLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 919187881 508 YRISSMTLT 516
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
325-651 |
6.22e-87 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 278.94 E-value: 6.22e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 325 RTTRVEKDDKRTQETTRHAGFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALN 404
Cdd:TIGR02915 118 HLYTLETENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAIN 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 405 CGGLSRDLLAGELFGYVEGAFTGARRGGMtGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFR 484
Cdd:TIGR02915 198 CAAIPENLLESELFGYEKGAFTGAVKQTL-GKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVR 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 485 LIAATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTALEGHSWPG 564
Cdd:TIGR02915 277 IVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 565 NIRELSNLVTAAYFLCDGGELTPADLPVTLCASAARVEEASDHPL-ESAEKAVIAEVILEQGGNLTRAAKALNIAKSTLY 643
Cdd:TIGR02915 357 NVRELENKVKRAVIMAEGNQITAEDLGLDARERAETPLEVNLREVrERAEREAVRKAIARVDGNIARAAELLGITRPTLY 436
|
....*...
gi 919187881 644 SKLKKYDL 651
Cdd:TIGR02915 437 DLMKKHGI 444
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
324-648 |
1.16e-85 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 278.53 E-value: 1.16e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 324 PRTTRVEKDDKRTQETTRHAGfsRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGA---- 399
Cdd:PRK15424 199 TLRHNTHYATRNALRTRYVLG--DLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDArqgk 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 400 ----FIALNCGGLSRDLLAGELFGYVEGAFTGARRGGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGE 475
Cdd:PRK15424 277 kshpFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGG 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 476 TRPRKVNFRLIAATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVeqhGGVPKRLSLDL-- 553
Cdd:PRK15424 357 HQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSL---AALSAPFSAALrq 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 554 -----QTALEGHSWPGNIRELSNLVTA-AYFLCDGGE--LTPADLpvtLCASAARVEEASDHPLESAEKAVIAEVILEQG 625
Cdd:PRK15424 434 glqqcETLLLHYDWPGNVRELRNLMERlALFLSVEPTpdLTPQFL---QLLLPELARESAKTPAPRLLAATLQQALERFN 510
|
330 340
....*....|....*....|...
gi 919187881 626 GNLTRAAKALNIAKSTLYSKLKK 648
Cdd:PRK15424 511 GDKTAAANYLGISRTTLWRRLKA 533
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
33-651 |
3.97e-84 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 277.33 E-value: 3.97e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 33 PDETVRSVIKASWQRCvSKEVNPLVAKQAIDLKSAQLEKIRAAHQELICASETIMRDAHDLLAQSGTIMHLVAPSGVILR 112
Cdd:PRK11388 8 DGRGISPLIATSWERC-NKLMKRETWNVPHQAQGVTFASIYRRKKALLTLGQAALEDAWEYMADRECALLILDETGCILS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 113 SHGDPKTLELANQFRLVPGANWAESVAGTNAIGTALRIGSPVQVHAYEHFCANISNWTCSAAVIRDPFeNKVLGAVNISG 192
Cdd:PRK11388 87 RNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQALHNWAFCATPVFDSK-GRLTGTIALAC 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 193 LKNTQHDYCLALAVSGAHRIEGQLahlllskrellLGETL----GRFTSPGN-------DGLLLMDLEGRLVRGNGHAER 261
Cdd:PRK11388 166 PVEQTSAADLPLTLSIAREVGNLL-----------LTDSLlaesNRHLNQLNallesmdDGVIAWDEQGNLQFLNAQAAR 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 262 VLaahgiKLDltpysPVLSLngeGRLAPRVeLILPRLAREWIE---PVRHRGETI---GYF--AVIPF-PRPRTTRVE-- 330
Cdd:PRK11388 235 LL-----RLD-----ATASQ---GRAITEL-LTLPAVLQQAIKqahPLKHVEVTFesqGQFidAVITLkPIIEGQGTSfi 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 331 ----KDDKRTQETTRHAG-----FSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFI 401
Cdd:PRK11388 301 lllhPVEQMRQLMTSQLGkvshtFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYI 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 402 ALNCGGLSRDLLAGELFGYVEGAftgaRRGGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKV 481
Cdd:PRK11388 381 AVNCQLYPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPV 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 482 NFRLIAATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLvEQHGGVPKRLSLDLQTALEGHS 561
Cdd:PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSL-EKRFSTRLKIDDDALARLVSYR 535
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 562 WPGNIRELSNLVTAAYFLCDGGELTPADLPVTLCASAARVEEASDHP-----LESAEKAVIAEVILEQGGNLTRAAKALN 636
Cdd:PRK11388 536 WPGNDFELRSVIENLALSSDNGRIRLSDLPEHLFTEQATDDVSATRLstslsLAELEKEAIINAAQVCGGRIQEMAALLG 615
|
650
....*....|....*
gi 919187881 637 IAKSTLYSKLKKYDL 651
Cdd:PRK11388 616 IGRTTLWRKMKQHGI 630
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
348-643 |
4.91e-83 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 270.50 E-value: 4.91e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 348 LIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGAFTG 427
Cdd:PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTG 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 428 A---RRGgmtgKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRM 504
Cdd:PRK05022 269 AisnRSG----KFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRA 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 505 DLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTALEGHSWPGNIRELSNLVTAAYFL----C 580
Cdd:PRK05022 345 DLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLararG 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 919187881 581 DGGELT--------PADLPVTLCASAARVEEASDHPL----ESAEKAVIAEVILEQGGNLTRAAKALNIAKSTLY 643
Cdd:PRK05022 425 AGRIVTleaqhldlPAEVALPPPEAAAAPAAVVSQNLreatEAFQRQLIRQALAQHQGNWAAAARALELDRANLH 499
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
317-648 |
5.59e-83 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 270.96 E-value: 5.59e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 317 AVIPFPRPRTTRVEKDDKRTQETTRHAgFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHC 396
Cdd:TIGR02329 184 DVARATRLRQAATLRSATRNQLRTRYR-LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 397 EGAFIALNCGGLSRDLLAGELFGYVEGAFTGARRGGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGET 476
Cdd:TIGR02329 263 DFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGT 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 477 RPRKVNFRLIAATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILarlveQHGGVPKRLSLD---- 552
Cdd:TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYL-----VQAAAALRLPDSeaaa 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 553 -----LQTALEGHSWPGNIRELSNLVT-AAYFLC--DGGELTPADLPVTLCASAARVEEASDHPLESAEKAVIAEVILEQ 624
Cdd:TIGR02329 418 qvlagVADPLQRYPWPGNVRELRNLVErLALELSamPAGALTPDVLRALAPELAEASGKGKTSALSLRERSRVEALAVRA 497
|
330 340
....*....|....*....|....*....
gi 919187881 625 -----GGNLTRAAKALNIAKSTLYSKLKK 648
Cdd:TIGR02329 498 alerfGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
348-648 |
1.59e-74 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 246.10 E-value: 1.59e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 348 LIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGAFTG 427
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 428 A--RRggmTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRMD 505
Cdd:PRK10365 221 AdkRR---EGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQD 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 506 LYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTALEGHSWPGNIRELSNLVTAAYFLCDGGEL 585
Cdd:PRK10365 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYI 377
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 919187881 586 TPADLPVTLCASAARVEEASD-HPLESAEKAVIAEVILEQGGNLTRAAKALNIAKSTLYSKLKK 648
Cdd:PRK10365 378 SERELPLAIASTPIPLGQSQDiQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
331-649 |
3.75e-73 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 242.83 E-value: 3.75e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 331 KDDKRT--QETTRHAGFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGL 408
Cdd:PRK11361 126 KKEIRHlhQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAAL 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 409 SRDLLAGELFGYVEGAFTGA--RRggmTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLI 486
Cdd:PRK11361 206 PESLLESELFGHEKGAFTGAqtLR---QGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRII 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 487 AATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARL-----VEQHGGVPKRLSLdlqtaLEGHS 561
Cdd:PRK11361 283 AATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFssenqRDIIDIDPMAMSL-----LTAWS 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 562 WPGNIRELSNLVTAAYFLCDGGELTPADLPVTLCASAARVEEASDHP---------LESAEKAVIAEVILEQGGNLTRAA 632
Cdd:PRK11361 358 WPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPvgernlkeeIKRVEKRIIMEVLEQQEGNRTRTA 437
|
330
....*....|....*..
gi 919187881 633 KALNIAKSTLYSKLKKY 649
Cdd:PRK11361 438 LMLGISRRALMYKLQEY 454
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
242-651 |
7.38e-67 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 222.42 E-value: 7.38e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 242 GLLLMDLEGRLVRGNGHAERVLAAHGIKLDLTPYSPVLSLNGEGRLAPRVELILPRLAREWIE-----PVRHRGETIGyf 316
Cdd:COG3604 12 LLLLLALALLLLVLLLLALLLRGDLLASALVLEESLELLALALSEALLAAQARQAALAARERQlflgvPLRVGGEVLG-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 317 aVIPFPRPRTTRVEKDDKRtqettrhagfsrligqsplFLKTVqqAQRLAKApipilLQGETGVGKELFANAMHEAGPHC 396
Cdd:COG3604 90 -VLTLDSRRPGAFSEEDLR-------------------LLETL--ASLAAVA-----ILGETGTGKELVANAIHELSPRA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 397 EGAFIALNCGGLSRDLLagelfgyvegaftgarrggmtgkiEAanggtlfldeigempldlqplflrvLQELEICRVGET 476
Cdd:COG3604 143 DKPFVKVNCAALPESLL------------------------ES-------------------------LQEGEFERVGGD 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 477 RPRKVNFRLIAATNRDLTEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTA 556
Cdd:COG3604 174 ETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEA 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 557 LEGHSWPGNIRELSNLVTAAYFLCDGGELTPADLPVtlcasaarveeASDHPLESAEKAVIAEVILEQGGNLTRAAKALN 636
Cdd:COG3604 254 LMAYPWPGNVRELENVIERAVILAEGGVLDADDLAP-----------GSREALEEVEREHILEALERTGGNIAGAARLLG 322
|
410
....*....|....*
gi 919187881 637 IAKSTLYSKLKKYDL 651
Cdd:COG3604 323 LTPSTLRSRMKKLGI 337
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
344-651 |
9.35e-65 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 222.25 E-value: 9.35e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 344 GFSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEG 423
Cdd:PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPG 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 424 AFTGARRGgMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFR 503
Cdd:PRK10820 282 AYPNALEG-KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFR 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 504 MDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGgVPK-RLSLDLQTALEGHSWPGNIRELSNLVTAAYFLCDG 582
Cdd:PRK10820 361 EDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQG-VPRpKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEG 439
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 919187881 583 GELTPAD--LPvTLCASAARVEEASDHPLESAEKAVIAEVI--LEQGGNLTRA-AKALNIAKSTLYSKLKKYDL 651
Cdd:PRK10820 440 YELRPQDilLP-DYDAAVAVGEDAMEGSLDEITSRFERSVLtrLYRNYPSTRKlAKRLGVSHTAIANKLREYGL 512
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
348-573 |
1.01e-64 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 220.09 E-value: 1.01e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 348 LIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGAFTG 427
Cdd:PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 428 A--RRGGMtgkIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRMD 505
Cdd:PRK15115 216 AvsNREGL---FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRED 292
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 919187881 506 LYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTALEGHSWPGNIRELSNLV 573
Cdd:PRK15115 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
346-648 |
4.02e-63 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 216.66 E-value: 4.02e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 346 SRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGAF 425
Cdd:PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 426 TGARRGgMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRMD 505
Cdd:PRK10923 218 TGANTI-RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRED 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 506 LYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTALEGHSWPGNIRELSNLVTAAYFLCDGGEL 585
Cdd:PRK10923 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 586 TPADLPVTLCASAAR--------------VEEASDHPLESAEKAVIAEVILE------------QGGNLTRAAKALNIAK 639
Cdd:PRK10923 377 LIQDLPGELFESTVPestsqmqpdswatlLAQWADRALRSGHQNLLSEAQPElertllttalrhTQGHKQEAARLLGWGR 456
|
....*....
gi 919187881 640 STLYSKLKK 648
Cdd:PRK10923 457 NTLTRKLKE 465
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
348-573 |
7.43e-59 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 200.67 E-value: 7.43e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 348 LIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGAFTG 427
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 428 ARRGGMtGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRMDLY 507
Cdd:PRK11608 88 AQKRHP-GRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 919187881 508 YRISSMTLTLPALRERRGDTTLLAEHILARLVEQhggvpkrLSLDL--------QTALEGHSWPGNIRELSNLV 573
Cdd:PRK11608 167 DRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRE-------LGLPLfpgfteraRETLLNYRWPGNIRELKNVV 233
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
345-648 |
1.61e-55 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 200.83 E-value: 1.61e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 345 FSRLIGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEGA 424
Cdd:PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 425 FTGARRGGMtGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDLTEEVAAGRFRM 504
Cdd:PRK15429 455 FTGASAQRI-GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 505 DLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVPKRLSLDLQTALEGHSWPGNIRELSNLVTAAYFLCDGGE 584
Cdd:PRK15429 534 DLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNV 613
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 919187881 585 LTpADLPVTLCASAARVEEASDHPLESA-EKAVIAEVILEQGGNLT---RAAKALNIAKSTLYSKLKK 648
Cdd:PRK15429 614 LQ-LSLPDITLPEPETPPAATVVAQEGEdEYQLIVRVLKETNGVVAgpkGAAQRLGLKRTTLLSRMKR 680
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
340-588 |
2.44e-45 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 169.24 E-value: 2.44e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 340 TRHAGFSRLIgqsplflktvQQAQRLA-KAPIPILLQGETGVGKELFANAMHE---AGPHCEGAFIALNCGGLSRDLLAG 415
Cdd:COG4650 188 TRNAAFNRLI----------EQIERVAiRSRAPILLTGPTGAGKSQLARRIYElkkARHQVSGRFVEVNCATLRGDGAMS 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 416 ELFGYVEGAFTGAR--RGGMtgkIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVGETRPRKVNFRLIAATNRDL 493
Cdd:COG4650 258 ALFGHVKGAFTGAVsdRAGL---LRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 494 TEEVAAGRFRMDLYYRISSMTLTLPALRERRGDTTLLAEHILARLVEQHGGVP------KRLSLDLQTALEGhSWPGNIR 567
Cdd:COG4650 335 RQEVAEGRFREDLLARINLWTFRLPGLAERREDIEPNLDYELARFAREQGRRVrfnkeaRARYLAFATSPEA-LWSGNFR 413
|
250 260
....*....|....*....|.
gi 919187881 568 ELSNLVTAAYFLCDGGELTPA 588
Cdd:COG4650 414 DLNASVTRMATLAEGGRITVA 434
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
315-579 |
1.59e-31 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 131.00 E-value: 1.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 315 YFAVIPFPRPRTTRVEKDDKRTQETT--RHAGFSRLIG--QSplfLKT-VQQAqrlaKAPI-------PILLQGETGVGK 382
Cdd:COG1221 71 AFEEQFGTKLKSEYSFVELLAEKENNeeEEDPFDNLIGanGS---LKNaIEQA----KAAIlyppkglHTLILGPTGVGK 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 383 ELFANAMHEAGPHC----EGA-FIALNCGglsrD------LLAGELFGYVEGAFTGA---RRggmtGKIEAANGGTLFLD 448
Cdd:COG1221 144 SFFAELMYEYAIEIgvlpEDApFVVFNCA----DyannpqLLMSQLFGYVKGAFTGAdkdKE----GLIEKADGGILFLD 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 449 EI------G-EMpldlqpLFLrVLQELEICRVGET-RPRKVNFRLIAATnrdlTEEVAA---GRF-RmdlyyRIsSMTLT 516
Cdd:COG1221 216 EVhrlppeGqEM------LFT-FMDKGIYRRLGETeKTRKANVRIIFAT----TEDPESsllKTFlR-----RI-PMVIK 278
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 919187881 517 LPALRERrgdtTL-----LAEHIL----ARLveqhgGVPKRLSLDLQTALEGHSWPGNIRELSN---LVTAAYFL 579
Cdd:COG1221 279 LPSLEER----SLeerleLIKHFFkeeaKRL-----NKPIKVSKEVLKALLLYDCPGNIGQLKSdiqLACAKAFL 344
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
353-512 |
1.51e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 91.44 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 353 PLFLKTVQQAQRLAKAPIP--ILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGELFGYVEgaftgarR 430
Cdd:cd00009 1 VGQEEAIEALREALELPPPknLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL-------V 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 431 GGMTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEicrvgETRPRKVNFRLIAATNRDLteevaAGRFRMDLYYRI 510
Cdd:cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN-----DLRIDRENVRVIGATNRPL-----LGDLDRALYDRL 143
|
..
gi 919187881 511 SS 512
Cdd:cd00009 144 DI 145
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
349-520 |
6.54e-16 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 74.69 E-value: 6.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 349 IGQSPLFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLagelfgyvegaftga 428
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELL--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 429 rrggmtgkiEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICRVgetrprkvnfRLIAATNRDLTEEVAAGRFRMDLYY 508
Cdd:pfam14532 66 ---------EQAKGGTLYLKDIADLSKALQKGLLLLLAKAEGYRV----------RLVCTSSKDLPQLAAAGLFDEQLYF 126
|
170
....*....|..
gi 919187881 509 RISSMTLTLPAL 520
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
369-509 |
5.48e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.46 E-value: 5.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 369 PIPILLQGETGVGKELFANAMH-EAGPHCEGaFIALNCGGL---SRDLLAGELFGYVEGAFTGARR-GGMTGKIEAANGG 443
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALArELGPPGGG-VIYIDGEDIleeVLDQLLLIIVGGKKASGSGELRlRLALALARKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 919187881 444 TLFLDEIGEMPLDLQplfLRVLQELEICRVGETRPRKVNFRLIAATNR--DLTEEVAAGRFRMDLYYR 509
Cdd:smart00382 81 VLILDEITSLLDAEQ---EALLLLLEELRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLL 145
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
609-648 |
5.54e-07 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 46.23 E-value: 5.54e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 919187881 609 LESAEKAVIAEVILEQGGNLTRAAKALNIAKSTLYSKLKK 648
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
371-491 |
3.10e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 46.90 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 371 PILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDL-----LAGELFGYVEGAFTGArrggmtgkieAANGGTL 445
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLfgrrnIDPGGASWVDGPLVRA----------AREGEIA 70
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 919187881 446 FLDEIGEMPLDLQPLFLRVLQE---LEICRVGETRPRKVNFRLIAATNR 491
Cdd:pfam07728 71 VLDEINRANPDVLNSLLSLLDErrlLLPDGGELVKAAPDGFRLIATMNP 119
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
609-651 |
1.34e-05 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 43.65 E-value: 1.34e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 919187881 609 LESAEKAVIaEVILEQ-GGNLTRAAKALNIAKSTLYSKLKKYDL 651
Cdd:COG2901 40 LAEVEKPLL-ETVLEHtRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
372-507 |
5.78e-05 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 43.35 E-value: 5.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 372 ILLQGETGVGKELFANAM-HEAGPHcegaFIALNCGGLsRDLLAGELFGYVEGAFTGARrggmtgkieAANGGTLFLDEI 450
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVaKELGAP----FIEISGSEL-VSKYVGESEKRLRELFEAAK---------KLAPCVIFIDEI 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 919187881 451 -----------GEMPLDLQPLFLRVLQELEIcrvgetrpRKVNFRLIAATNR-DLTEEVAAGRFRMDLY 507
Cdd:pfam00004 67 dalagsrgsggDSESRRVVNQLLTELDGFTS--------SNSKVIVIAATNRpDKLDPALLGRFDRIIE 127
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
354-491 |
6.79e-04 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 40.73 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 354 LFLKTVQQAQRLAKAPIPILLQGETGVGKELFANAM-HEAGPHcegaFIALNCGGlsrdlLAGELFGYVEGA----FTGA 428
Cdd:cd19481 11 APRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALaGELGLP----LIVVKLSS-----LLSKYVGESEKNlrkiFERA 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 919187881 429 RRggMTGKIeaanggtLFLDEI---------GEMPLDLQPLFLRVLQELEicrvGETRPRKVNFrlIAATNR 491
Cdd:cd19481 82 RR--LAPCI-------LFIDEIdaigrkrdsSGESGELRRVLNQLLTELD----GVNSRSKVLV--IAATNR 138
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
345-512 |
8.91e-04 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 40.62 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 345 FSRLIGQSPLfLKTVQQAQRLAKA--------PIPILLQGETGVGKELFANAMHEAGPHCEGAFIALNCGGLSRDLLAGE 416
Cdd:cd19499 10 HERVVGQDEA-VKAVSDAIRRARAglsdpnrpIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEYMEKHSVSR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919187881 417 LFGYVEGaFTGARRGG-MTGKIEAANGGTLFLDEIGEMPLDLQPLFLRVLQELEICrvgETRPRKVNFR---LIAATNrd 492
Cdd:cd19499 89 LIGAPPG-YVGYTEGGqLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLT---DSHGRTVDFKntiIIMTSN-- 162
|
170 180
....*....|....*....|
gi 919187881 493 lteevaagRFRMDLYYRISS 512
Cdd:cd19499 163 --------HFRPEFLNRIDE 174
|
|
| fis |
PRK00430 |
DNA-binding transcriptional regulator Fis; |
626-651 |
2.73e-03 |
|
DNA-binding transcriptional regulator Fis;
Pssm-ID: 179020 [Multi-domain] Cd Length: 95 Bit Score: 37.35 E-value: 2.73e-03
10 20
....*....|....*....|....*.
gi 919187881 626 GNLTRAAKALNIAKSTLYSKLKKYDL 651
Cdd:PRK00430 69 GNQTRAALMLGINRGTLRKKLKKYGM 94
|
|
| |
