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Conserved domains on  [gi|919395840|ref|WP_052821380|]
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MULTISPECIES: amino acid ABC transporter permease [Agrobacterium]

Protein Classification

amino acid ABC transporter permease( domain architecture ID 11433582)

amino acid ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter which binds and transports amino acids

Gene Ontology:  GO:0140359|GO:0042626|GO:0006865
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 3-211 4.89e-76

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 228.42  E-value: 4.89e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   3 YTFQFGPLVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPN 82
Cdd:COG0765    1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  83 LGVRMSPLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLST 162
Cdd:COG0765   81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 919395840 163 SLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAILNL 211
Cdd:COG0765  161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARR 209
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 3-211 4.89e-76

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 228.42  E-value: 4.89e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   3 YTFQFGPLVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPN 82
Cdd:COG0765    1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  83 LGVRMSPLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLST 162
Cdd:COG0765   81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 919395840 163 SLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAILNL 211
Cdd:COG0765  161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARR 209
PRK15100 PRK15100
cystine ABC transporter permease;
1-210 5.82e-41

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 139.11  E-value: 5.82e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   1 MDYTFQFgpLVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGL 80
Cdd:PRK15100   1 MQESIQL--VIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  81 PNLGVRMSPLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLML 160
Cdd:PRK15100  79 PQFGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVK 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 919395840 161 STSLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAILN 210
Cdd:PRK15100 159 DTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQN 208
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 14-209 5.98e-26

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 99.93  E-value: 5.98e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   14 LPQFISGFWLTMLLAFVGIFGGIALGVGCAVAS-TLPGWLPRfLVRGYVEAMRNTPLLVQIFVIFFGLPNLGVRMSPLTS 92
Cdd:TIGR03003  10 LPTLIEGLKITILATALGFAIAAVLGLVFAILRrSAPTPISW-PTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   93 VFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVED 172
Cdd:TIGR03003  89 GVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLE 168

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 919395840  173 LTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAIL 209
Cdd:TIGR03003 169 LMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFL 205
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 21-205 1.38e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 77.32  E-value: 1.38e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  21 FWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNLGVRMSPLTSVFIALVL- 99
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILa 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840 100 --NNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAA 177
Cdd:cd06261   81 llLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*...
gi 919395840 178 MIASSETFRTMEVYLVIAAVYVLMNFVF 205
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 35-211 1.03e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 61.55  E-value: 1.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   35 GIALGVGCAVastLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNLGVRmSPLTSVFIALVLNNGGYIAEIVRGGIQ 114
Cdd:pfam00528   1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILG-HGILPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  115 STHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIASSETFRTME---VY 191
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEiqgPV 156

                         170       180
                  ....*....|....*....|
gi 919395840  192 LVIAAVYVLMNFVFRAILNL 211
Cdd:pfam00528 157 LAAALILLLLNLLVDILQRL 176
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 3-211 4.89e-76

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 228.42  E-value: 4.89e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   3 YTFQFGPLVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPN 82
Cdd:COG0765    1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  83 LGVRMSPLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLST 162
Cdd:COG0765   81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 919395840 163 SLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAILNL 211
Cdd:COG0765  161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARR 209
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 10-222 9.60e-55

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 174.90  E-value: 9.60e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  10 LVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNL-GVRMS 88
Cdd:COG4160    6 LFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFeWVRES 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  89 PLTSVF--------IALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLML 160
Cdd:COG4160   86 WLWPLLrdpwfcalLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVILMLK 165

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 919395840 161 STSLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAILNLAG--LLIFRRSRR 222
Cdd:COG4160  166 ATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLErrLLRHLRPRR 229
PRK15100 PRK15100
cystine ABC transporter permease;
1-210 5.82e-41

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 139.11  E-value: 5.82e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   1 MDYTFQFgpLVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGL 80
Cdd:PRK15100   1 MQESIQL--VIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  81 PNLGVRMSPLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLML 160
Cdd:PRK15100  79 PQFGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVK 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 919395840 161 STSLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAILN 210
Cdd:PRK15100 159 DTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQN 208
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 14-209 3.32e-38

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 132.10  E-value: 3.32e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  14 LPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNL--GVRMSPLT 91
Cdd:PRK09494  12 IPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAfnDLRIDPFT 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  92 SVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVE 171
Cdd:PRK09494  92 AAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVA 171

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 919395840 172 DLT--GAAMIASSetFRTMEVYLVIAAVYVLMNFVFRAIL 209
Cdd:PRK09494 172 ELTrqGQEIIAGN--FRALEIWSAVAVIYLIITLVLSFIL 209
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 14-209 5.98e-26

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 99.93  E-value: 5.98e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   14 LPQFISGFWLTMLLAFVGIFGGIALGVGCAVAS-TLPGWLPRfLVRGYVEAMRNTPLLVQIFVIFFGLPNLGVRMSPLTS 92
Cdd:TIGR03003  10 LPTLIEGLKITILATALGFAIAAVLGLVFAILRrSAPTPISW-PTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   93 VFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVED 172
Cdd:TIGR03003  89 GVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLE 168

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 919395840  173 LTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAIL 209
Cdd:TIGR03003 169 LMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFL 205
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 12-211 4.25e-25

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 101.38  E-value: 4.25e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  12 NYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIF----------------- 74
Cdd:COG4597   83 TYGRAFLVGLLNTLLVAVLGIVLATILGFLVGIARLSSNWLVSKLATVYVEIFRNIPLLLQIFfwyfavlealpsprqsl 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  75 ---------------------------------------------------------------VIFFGLPNL-------- 83
Cdd:COG4597  163 slfdgvflnnrglylpapvfepgfgwvlaallaaivaafvlrrwarrrqeatgqrfpvwwislALLVGLPLLaflllgap 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  84 ---------------GVRMSP-LTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKV 147
Cdd:COG4597  243 lsldypelkgfnfrgGLTLSPeFVALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVI 322

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 919395840 148 FTPVVSQCVLLMLSTSLVSAIGVEDLTGAAM-IASSETFRTMEVYLVIAAVYVLMNFVFRAILNL 211
Cdd:COG4597  323 IPPLTSQYLNLTKNSSLAVAIGYPDLVSVFAgTTLNQTGQAIEIIAITMAVYLTISLLISLLMNW 387
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 13-111 5.54e-25

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 94.14  E-value: 5.54e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   13 YLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNLGVRMSPLTS 92
Cdd:TIGR01726   1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTA 80

                          90
                  ....*....|....*....
gi 919395840   93 VFIALVLNNGGYIAEIVRG 111
Cdd:TIGR01726  81 AVIALTLFYGAYLAEIFRG 99
PRK15069 PRK15069
histidine ABC transporter permease HisM;
18-212 6.06e-22

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 90.11  E-value: 6.06e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  18 ISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNLG-VRMSPLTSVF-- 94
Cdd:PRK15069  20 FTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMYSLEiVRGTDLLDAFfr 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  95 -------IALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFtPVVSQCVLLML-STSLVS 166
Cdd:PRK15069 100 sglnctiLAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRAL-PAYSNEVILMLhATTLAF 178

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 919395840 167 AIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAILNLA 212
Cdd:PRK15069 179 TATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISLFRRA 224
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 21-205 1.38e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 77.32  E-value: 1.38e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  21 FWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNLGVRMSPLTSVFIALVL- 99
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILa 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840 100 --NNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAA 177
Cdd:cd06261   81 llLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*...
gi 919395840 178 MIASSETFRTMEVYLVIAAVYVLMNFVF 205
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
artM PRK11122
arginine ABC transporter permease ArtM;
12-202 5.15e-17

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 76.54  E-value: 5.15e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  12 NYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFG---------LPN 82
Cdd:PRK11122   3 EYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGpgqfpwlqeYPW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  83 LGVRMS-PLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRfVILPPALEKVFTPVVSQCVLLMLS 161
Cdd:PRK11122  83 LWHLLSqPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKS 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 919395840 162 TSLVSAIGVEDLTGAAMIASSETFRTMeVYLVIAAVYVLMN 202
Cdd:PRK11122 162 TSLAYTITLMDVMGYSQLLYGRTYDVM-VFGAAGIIYLVVN 201
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
3-203 5.42e-16

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 74.10  E-value: 5.42e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   3 YTFQFGPLVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPN 82
Cdd:PRK15107   2 YEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  83 LGVR---MSP-----LTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQ 154
Cdd:PRK15107  82 FLQNvlgLSPktdirLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQ 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 919395840 155 CVLLMLSTSLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNF 203
Cdd:PRK15107 162 GIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISL 210
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 35-211 1.03e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 61.55  E-value: 1.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   35 GIALGVGCAVastLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNLGVRmSPLTSVFIALVLNNGGYIAEIVRGGIQ 114
Cdd:pfam00528   1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILG-HGILPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  115 STHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIASSETFRTME---VY 191
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEiqgPV 156

                         170       180
                  ....*....|....*....|
gi 919395840  192 LVIAAVYVLMNFVFRAILNL 211
Cdd:pfam00528 157 LAAALILLLLNLLVDILQRL 176
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
12-209 5.86e-11

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 60.08  E-value: 5.86e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  12 NYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLPNL-------- 83
Cdd:PRK11123   2 NEFFPLASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLlltlsdgf 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  84 ----------------GVRMSPLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKV 147
Cdd:PRK11123  82 tlnlgfvqipvqmdieNFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHA 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 919395840 148 FTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAIL 209
Cdd:PRK11123 162 LPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYIL 223
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 7-141 1.31e-10

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 59.48  E-value: 1.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840    7 FGPLVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVAS---TLPGWLPRFLVRGYVEAMRNTPLLV--QIFVIFFGLp 81
Cdd:TIGR01097  46 FPPDWSYLPRILKALLETLAMAILGTVLAAVLAVPLALLAarnITPSPWLYGLARLLLNFLRAIPELVwaLIFVAAVGL- 124

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   82 nlgvrmSPLTSVFiALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILP 141
Cdd:TIGR01097 125 ------GPFAGVL-ALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLP 177
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 7-141 1.58e-10

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 58.94  E-value: 1.58e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840   7 FGPLVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVAS---TLPGWLPRFLVRGYVEAMRNTPLLV--QIFVIFFGLp 81
Cdd:COG3639   39 FPPDWSYLPDLLSALLETLAIALLGTLLGAVLALPLAFLAarnLAPNPWVRLLARRLLNVLRAIPELVwaLIFVAAVGL- 117

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  82 nlgvrmSPLTSVfIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILP 141
Cdd:COG3639  118 ------GPFAGV-LALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLP 170
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 15-208 1.20e-09

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 56.69  E-value: 1.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  15 PQFISGFWLTMLLAFVGIFGGIALGVGCAVAStlpGWLPRF--LVRGYVEAMRNTPL--LVQIFVIFFGLPNLGVRMSPL 90
Cdd:COG0600   57 GELWEHLLASLLRVLLGFALAALLGVPLGLLL---GLSRLLrrLLDPLLVFLRPIPPlaLAPLLILWFGIGEASKIFVIF 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  91 TSVFIALVLNnggyiaeiVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVsqcvlLMLSTSLVSAIGV 170
Cdd:COG0600  134 LGAFFPILLN--------TAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLR-----IALGLAWIGLVVA 200

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 919395840 171 EDLT-----GAAMIASSETFRTMEVY---LVIAAVYVLMNFVFRAI 208
Cdd:COG0600  201 ELLGassglGYLILDARQLLDTDLVFaaiLVIGLLGLLLDLLLRLL 246
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
10-209 1.64e-09

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 55.95  E-value: 1.64e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  10 LVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLPRFLVRGYVEAMRNTPLLVQIFVIFFGLP-------- 81
Cdd:PRK15135   2 LYGFSGVILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQialnsvte 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  82 NLGVR---MSPLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLL 158
Cdd:PRK15135  82 ALGVGqidIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVI 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 919395840 159 MLSTSLVSAIGVEDLTGAAMIASSETFRTMEVYLVIAAVYVLMNFVFRAIL 209
Cdd:PRK15135 162 LKATALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVL 212
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 15-141 4.30e-07

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 49.34  E-value: 4.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  15 PQFISGFWLTMLLAFVGIFGGIALGVGCAVAStlpgWLPRFLVRGYVEAMRNTPLLVQIFVIFFGL----PNLGVRMSPL 90
Cdd:COG1177   57 PRLLDALLNSLLIALLSTLLATVLGTPAALAL----ARYRFRGRRLLLALLLLPLVVPGIVLGVALlllfSALGLSGGLW 132

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 919395840  91 TsVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILP 141
Cdd:COG1177  133 G-LILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLP 182
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 10-170 2.51e-04

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 40.81  E-value: 2.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  10 LVNYLPQFISGFWLTMLLAFVGIFGGIALGVGCAVASTLPGWLpRFLVRGYVEAMRNTP---LLVqIFVIFFGLpnlgvr 86
Cdd:COG1174    9 LADNRDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRL-AGLVLGVANILQTIPslaLLA-LLIPLLGI------ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  87 mSPLTSVfIALVLnnggY-IAEIVRG---GIQSTHRSQVEAAESLGMTYFQTLRFVILPPALekvftPVvsqcVLLMLST 162
Cdd:COG1174   81 -GPAPAI-IALVL----YaLLPILRNtytGLRSVDPAVVEAARGMGMTPWQRLWRVELPLAL-----PV----ILAGIRT 145


                 ....*...
gi 919395840 163 SLVSAIGV 170
Cdd:COG1174  146 AAVQNIGT 153
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
15-141 3.66e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.91  E-value: 3.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  15 PQFISGFWLTMLLAFVGIFGGIALGVGCA---------------VASTLPGWLPRFLVR-GYVEAMRNTPLLVQIFVIFF 78
Cdd:COG1178   50 PYLWRALGNTLLLALLVTLLSLLLGVPLAwllartdfpgrrllrWLLLLPLALPPYVVAlAWIALFGPNGLLNTLLRALF 129

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 919395840  79 GLPNLGVRMspLTSVFIALVLNNGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILP 141
Cdd:COG1178  130 GLEPPDIYG--LGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLP 190
PRK10160 PRK10160
taurine ABC transporter permease TauC;
23-149 2.94e-03

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 37.84  E-value: 2.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  23 LTMLLAFVGIfgGIALGVGCAVASTLPGWLPRFlvrgyVEAMRNTPLL--VQIFVIFFGLPNlgvrmsplTSVFIALVLN 100
Cdd:PRK10160  88 VLALLAAVVI--GIPVGIAMGLSPTVRGILDPL-----IELYRPVPPLayLPLMVIWFGIGE--------TSKILLIYLA 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 919395840 101 NGGYIAEIVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFT 149
Cdd:PRK10160 153 IFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILT 201
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
28-201 9.25e-03

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 36.45  E-value: 9.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840  28 AFVGIFGGIALGVGCAVASTLPGWLPRfLVRGYVEAMRNTP--LLVQIFVIFFGLPNLG----VRMSPLTSVFIAlvlnn 101
Cdd:PRK11365  69 ALIGFSIGGSLGLILGLISGLSRWGER-LLDTSIQMLRNVPhlALIPLVILWFGIDESAkiflVALGTLFPIYIN----- 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919395840 102 ggyiaeiVRGGIQSTHRSQVEAAESLGMTYFQTLRFVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIAS 181
Cdd:PRK11365 143 -------TWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNA 215

                        170       180
                 ....*....|....*....|
gi 919395840 182 SETFRTmEVYLVIAAVYVLM 201
Cdd:PRK11365 216 REFLQT-DVVVVAIILYALL 234
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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