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Conserved domains on  [gi|919594122|ref|WP_052891873|]
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zinc ribbon domain-containing protein [Sulfolobus islandicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YvbJ super family cl26236
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
3-71 6.08e-06

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


The actual alignment was detected with superfamily member COG4640:

Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 43.61  E-value: 6.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919594122   3 KYCTICGSPNEDNANFCTKCGNKFPLVPNTAFQIDNNKS-KIIFESQVKRA------IPIYS-------LSSIFTIYRNW 68
Cdd:COG4640    2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAqSAVSNTAVKKKitkkkkIIIASiavililLIGFYYLGKNY 81


                 ...
gi 919594122  69 YSK 71
Cdd:COG4640   82 YSP 84
 
Name Accession Description Interval E-value
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
3-71 6.08e-06

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 43.61  E-value: 6.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919594122   3 KYCTICGSPNEDNANFCTKCGNKFPLVPNTAFQIDNNKS-KIIFESQVKRA------IPIYS-------LSSIFTIYRNW 68
Cdd:COG4640    2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAqSAVSNTAVKKKitkkkkIIIASiavililLIGFYYLGKNY 81


                 ...
gi 919594122  69 YSK 71
Cdd:COG4640   82 YSP 84
zinc_ribbon_2 pfam13240
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 4-24 6.26e-06

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 433054 [Multi-domain]  Cd Length: 21  Bit Score: 40.18  E-value: 6.26e-06
                          10        20
                  ....*....|....*....|.
gi 919594122    4 YCTICGSPNEDNANFCTKCGN 24
Cdd:pfam13240   1 FCPNCGAENPDGAKFCPKCGA 21
 
Name Accession Description Interval E-value
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
3-71 6.08e-06

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 43.61  E-value: 6.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919594122   3 KYCTICGSPNEDNANFCTKCGNKFPLVPNTAFQIDNNKS-KIIFESQVKRA------IPIYS-------LSSIFTIYRNW 68
Cdd:COG4640    2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAqSAVSNTAVKKKitkkkkIIIASiavililLIGFYYLGKNY 81


                 ...
gi 919594122  69 YSK 71
Cdd:COG4640   82 YSP 84
zinc_ribbon_2 pfam13240
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 4-24 6.26e-06

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 433054 [Multi-domain]  Cd Length: 21  Bit Score: 40.18  E-value: 6.26e-06
                          10        20
                  ....*....|....*....|.
gi 919594122    4 YCTICGSPNEDNANFCTKCGN 24
Cdd:pfam13240   1 FCPNCGAENPDGAKFCPKCGA 21
zf-ribbon_3 pfam13248
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 3-26 8.70e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 404185 [Multi-domain]  Cd Length: 25  Bit Score: 31.78  E-value: 8.70e-03
                          10        20
                  ....*....|....*....|....
gi 919594122    3 KYCTICGSPNEDNANFCTKCGNKF 26
Cdd:pfam13248   2 VRCPNCGAPVSPDDNVCPYCGTKL 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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