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Conserved domains on  [gi|920021272|ref|WP_052935990|]
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MULTISPECIES: Ig-like domain-containing protein [Enterobacteriaceae]

Protein Classification

Ig-like domain-containing protein( domain architecture ID 11475235)

Ig-like domain containing protein similar to bacterial surface-expressed proteins that mediate host cell invasion or attachment and to phage Ig-like domains, which may play an accessory role in phage infection by weakly interacting with carbohydrates on the bacterial cell surface

Gene Ontology:  GO:0005515
PubMed:  10436082|9417933|7932691|16631788

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 4-91 5.15e-06

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


:

Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 42.76  E-value: 5.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920021272   4 IQVTITPSDATDKSFTVESDHPDIVRVDGT-TCTALKAGQAVLTIKTNDGNKTAQCTVTVREAHKSVSTVSVEPTTKEVT 82
Cdd:COG5492  365 LTATVTPANATNKNVTWSSSDPSVATVDSNgLVTAVAAGTATITATTKDGGKTATCTVTVTAAGSTGTVVVVSLAATSAV 444


                 ....*....
gi 920021272  83 VGDNFTVSQ 91
Cdd:COG5492  445 SASVVLTPA 453
 
Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 4-91 5.15e-06

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 42.76  E-value: 5.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920021272   4 IQVTITPSDATDKSFTVESDHPDIVRVDGT-TCTALKAGQAVLTIKTNDGNKTAQCTVTVREAHKSVSTVSVEPTTKEVT 82
Cdd:COG5492  365 LTATVTPANATNKNVTWSSSDPSVATVDSNgLVTAVAAGTATITATTKDGGKTATCTVTVTAAGSTGTVVVVSLAATSAV 444


                 ....*....
gi 920021272  83 VGDNFTVSQ 91
Cdd:COG5492  445 SASVVLTPA 453
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 5-60 1.34e-03

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 34.29  E-value: 1.34e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 920021272   5 QVTITPSDATDKSFTVESDHPDIVRVDGT-TCTALKAGQAVLTIKTNDGNKTAQCTV 60
Cdd:pfam02368 21 TVYVTPSNASDKKVTWTSSNGSVATVSQTgLVTGVAAGKATITATSKDGNDKATKTV 77
 
Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 4-91 5.15e-06

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 42.76  E-value: 5.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 920021272   4 IQVTITPSDATDKSFTVESDHPDIVRVDGT-TCTALKAGQAVLTIKTNDGNKTAQCTVTVREAHKSVSTVSVEPTTKEVT 82
Cdd:COG5492  365 LTATVTPANATNKNVTWSSSDPSVATVDSNgLVTAVAAGTATITATTKDGGKTATCTVTVTAAGSTGTVVVVSLAATSAV 444


                 ....*....
gi 920021272  83 VGDNFTVSQ 91
Cdd:COG5492  445 SASVVLTPA 453
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 5-60 1.34e-03

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 34.29  E-value: 1.34e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 920021272   5 QVTITPSDATDKSFTVESDHPDIVRVDGT-TCTALKAGQAVLTIKTNDGNKTAQCTV 60
Cdd:pfam02368 21 TVYVTPSNASDKKVTWTSSNGSVATVSQTgLVTGVAAGKATITATSKDGNDKATKTV 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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