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Conserved domains on  [gi|921155854|ref|WP_053101951|]
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YheV family putative zinc ribbon protein [Thiopseudomonas alkaliphila]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2387 super family cl01410
Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 ...
 5-79 6.69e-27

Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.


The actual alignment was detected with superfamily member pfam09526:

Pssm-ID: 470193  Cd Length: 72  Bit Score: 93.33  E-value: 6.69e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 921155854   5 VVKRFIAGAVCPACEVQDGVRMWQEQGVQHRDCVHCGYGDTLNAQgnAIPKELPTRVsSQATVKPAPSSQALQFF 79
Cdd:pfam09526  1 TKKRFIAGAVCPACSEMDKLVMWKEDGVPHRECVACGFSDTLNEK--SVPKELGTRV-NVSAPAADPQVQTVQFF 72
 
Name Accession Description Interval E-value
DUF2387 pfam09526
Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 ...
 5-79 6.69e-27

Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.


Pssm-ID: 430664  Cd Length: 72  Bit Score: 93.33  E-value: 6.69e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 921155854   5 VVKRFIAGAVCPACEVQDGVRMWQEQGVQHRDCVHCGYGDTLNAQgnAIPKELPTRVsSQATVKPAPSSQALQFF 79
Cdd:pfam09526  1 TKKRFIAGAVCPACSEMDKLVMWKEDGVPHRECVACGFSDTLNEK--SVPKELGTRV-NVSAPAADPQVQTVQFF 72
COG3529 COG3529
Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction ...
 2-56 2.97e-24

Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 442751  Cd Length: 67  Bit Score: 86.49  E-value: 2.97e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 921155854  2 TTSVVKRFIAGAVCPACEVQDGVRMWQEQGVQHRDCVHCGYGDTLNAQGNAIPKE 56
Cdd:COG3529   1 MTKMKKRFIAGAVCPKCQAMDTLVLWRENGVEVRECVSCGYTETQPDEEVEAATE 55
TIGR02443 TIGR02443
conserved hypothetical metal-binding protein; Members of this family are small proteins, about ...
 7-50 1.02e-18

conserved hypothetical metal-binding protein; Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.


Pssm-ID: 131496  Cd Length: 59  Bit Score: 72.48  E-value: 1.02e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 921155854   7 KRFIAGAVCPACEVQDGVRMWQEQGVQHRDCVHCGYGDTLNAQG 50
Cdd:TIGR02443  4 KRFIAGAVCPACSAQDTLAMWKENNIELVECVECGYQEQQKDQS 47
 
Name Accession Description Interval E-value
DUF2387 pfam09526
Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 ...
 5-79 6.69e-27

Probable metal-binding protein (DUF2387); Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.


Pssm-ID: 430664  Cd Length: 72  Bit Score: 93.33  E-value: 6.69e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 921155854   5 VVKRFIAGAVCPACEVQDGVRMWQEQGVQHRDCVHCGYGDTLNAQgnAIPKELPTRVsSQATVKPAPSSQALQFF 79
Cdd:pfam09526  1 TKKRFIAGAVCPACSEMDKLVMWKEDGVPHRECVACGFSDTLNEK--SVPKELGTRV-NVSAPAADPQVQTVQFF 72
COG3529 COG3529
Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction ...
 2-56 2.97e-24

Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 442751  Cd Length: 67  Bit Score: 86.49  E-value: 2.97e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 921155854  2 TTSVVKRFIAGAVCPACEVQDGVRMWQEQGVQHRDCVHCGYGDTLNAQGNAIPKE 56
Cdd:COG3529   1 MTKMKKRFIAGAVCPKCQAMDTLVLWRENGVEVRECVSCGYTETQPDEEVEAATE 55
TIGR02443 TIGR02443
conserved hypothetical metal-binding protein; Members of this family are small proteins, about ...
 7-50 1.02e-18

conserved hypothetical metal-binding protein; Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.


Pssm-ID: 131496  Cd Length: 59  Bit Score: 72.48  E-value: 1.02e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 921155854   7 KRFIAGAVCPACEVQDGVRMWQEQGVQHRDCVHCGYGDTLNAQG 50
Cdd:TIGR02443  4 KRFIAGAVCPACSAQDTLAMWKENNIELVECVECGYQEQQKDQS 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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