|
Name |
Accession |
Description |
Interval |
E-value |
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
4-234 |
5.10e-108 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 312.79 E-value: 5.10e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFILSKQRQseLILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRM 83
Cdd:COG1116 5 APALELRGVSKRFPTGGGGV--TALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:COG1116 83 GVVFQEPALLPWLTVLDNVALGLELRGVPKAERRE-RARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 164 LDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVLGGKPAQIMNTYQIKTPR 234
Cdd:COG1116 162 MDEPFGALDALTRERLQDELLRLWQETGK---TVLFVTHDVDEAVFLADRVVVLSARPGRIVEEIDVDLPR 229
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
7-230 |
2.28e-98 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 286.68 E-value: 2.28e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFILSKQRQseLILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMV 86
Cdd:cd03293 1 LEVRNVSKTYGGGGGAV--TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 87 FQNFALFPWLTVRQNIMFGLESQLNSDCQyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPKAE-ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 167 PFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLGGKPAQIMNTYQI 230
Cdd:cd03293 158 PFSALDALTREQLQEELLDIWRETG---KTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
7-224 |
2.33e-72 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 220.47 E-value: 2.33e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APNRR-M 83
Cdd:cd03259 1 LELKGLSKTY------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTgvPPERRnI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQNFALFPWLTVRQNIMFGLESQLNSDCQyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:cd03259 75 GMVFQDYALFPHLTVAENIAFGLKLRGVPKAE-IRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922315154 164 LDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:cd03259 154 LDEPLSALDAKLREELREELKELQRELGI---TTIYVTHDQEEALALADRIAVMnEGRIVQV 212
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-224 |
4.47e-71 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 221.90 E-value: 4.47e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAvLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA-- 78
Cdd:COG3842 1 MAMP-ALELENVSKRY------GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGlp 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 79 PNRR-MSMVFQNFALFPWLTVRQNIMFGLESQLNSDcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:COG3842 74 PEKRnVGMVFQDYALFPHLTVAENVAFGLRMRGVPK-AEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 158 EPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:COG3842 153 EPRVLLLDEPLSALDAKLREEMREELRRL--QRELGI-TFIYVTHDQEEALALADRIAVMnDGRIEQV 217
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
7-237 |
4.22e-68 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 211.26 E-value: 4.22e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMV 86
Cdd:COG4525 4 LTVRHVSVRY--PGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGADRGVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 87 FQNFALFPWLTVRQNIMFGLesQLN----SDCQyvdNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELL 162
Cdd:COG4525 82 FQKDALLPWLNVLDNVAFGL--RLRgvpkAERR---ARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 163 LLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLGGKPAQIMNTYQIktPRNQR 237
Cdd:COG4525 157 LMDEPFGALDALTREQMQELLLDVWQRTG---KGVFLITHSVEEALFLATRLVVMSPGPGRIVERLEL--DFSRR 226
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
7-235 |
1.19e-65 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 207.69 E-value: 1.19e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilsKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT----APNRR 82
Cdd:COG1118 3 IEVRNISKRF---GSFT---LLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFtnlpPRERR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQNFALFPWLTVRQNIMFGLESQLNSDcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELL 162
Cdd:COG1118 77 VGFVFQHYALFPHMTVAENIAFGLRVRPPSK-AEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 163 LLDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL-GGKPAQIMNTYQI-KTPRN 235
Cdd:COG1118 156 LLDEPFGALDAKVRKELRRWLRRLHDELGG---TTVFVTHDQEEALELADRVVVMnQGRIEQVGTPDEVyDRPAT 227
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
28-234 |
2.74e-60 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 190.37 E-value: 2.74e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMVFQNFALFPWLTVRQNIMFGLE 107
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 108 SqLNSDCQYVDNQ--IDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLIT 185
Cdd:TIGR01184 81 R-VLPDLSKSERRaiVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 922315154 186 LWERRKFkmqAIVLITHNISEAVRLSDVIYVLGGKP-AQIMNTYQIKTPR 234
Cdd:TIGR01184 160 IWEEHRV---TVLMVTHDVDEALLLSDRVVMLTNGPaANIGQILEVPFPR 206
|
|
| ABC_ATP_SaoA |
NF040729 |
ABC transporter ATP-binding protein SaoA; SaoA is the ATP-binding subunit of an ABC ... |
7-245 |
4.55e-60 |
|
ABC transporter ATP-binding protein SaoA; SaoA is the ATP-binding subunit of an ABC transporter in which both the permease subunit SaoP, and the substrate-binding protein SaoB, are nearly always selenoproteins that were unrecognized as such until recently (2022). The SAO system is found in Clostridium difficile and various other anaerobic heterotrophs.
Pssm-ID: 468693 [Multi-domain] Cd Length: 248 Bit Score: 190.34 E-value: 4.55e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFILSKQRQSelILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMV 86
Cdd:NF040729 2 LKIQNISKTFINNKKENE--VLKDISFDVEEGEFVSLLGPSGCGKTTLLTIIAGFQNATSGEILVNGNEVTKPGPDRGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 87 FQNFALFPWLTVRQNIMFGLEsQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:NF040729 80 FQNYALFPWMTVKENIEYPMK-QQKMPKQEREKRLNELLEMAQLTGKENLYPHQISGGMKQRTAVIRALACKPEVLLMDE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 167 PFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLGGKPAQIMNTYQIKT--PRNQRTEQQIRA 244
Cdd:NF040729 159 PLGAVDFQMRQILQEELESIWLKDK---TTVLMVTHDVDEAVYLSDRVIVMSRDKGKILEDLKIDLprPRNRESEKYLEY 235
|
.
gi 922315154 245 K 245
Cdd:NF040729 236 K 236
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
5-227 |
7.36e-60 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 189.42 E-value: 7.36e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 5 VLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN---- 80
Cdd:COG1127 4 PMIEVRNLTKSF------GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSekel 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ----RRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALA 156
Cdd:COG1127 78 yelrRRIGMLFQGGALFDSLTVFENVAFPLREHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 157 VEPELLLLDEPFSALDVLTGQRLgQDLI-TLweRRKFKMqAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMNT 227
Cdd:COG1127 158 LDPEILLYDEPTAGLDPITSAVI-DELIrEL--RDELGL-TSVVVTHDLDSAFAIADRVAVLAdgkiiaeGTPEELLAS 232
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
43-224 |
1.01e-59 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 193.78 E-value: 1.01e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 43 IIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN---------RRMSMVFQNFALFPWLTVRQNIMFGLEsqlnsd 113
Cdd:COG4175 58 IMGLSGSGKSTLVRCLNRLIEPTAGEVLIDGEDITKLSkkelrelrrKKMSMVFQHFALLPHRTVLENVAFGLE------ 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 114 CQYVD-----NQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLgQD-LITLW 187
Cdd:COG4175 132 IQGVPkaerrERAREALELVGLAGWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRREM-QDeLLELQ 210
|
170 180 190
....*....|....*....|....*....|....*...
gi 922315154 188 ERRKfkmQAIVLITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:COG4175 211 AKLK---KTIVFITHDLDEALRLGDRIAIMkDGRIVQI 245
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
7-234 |
1.48e-57 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 184.77 E-value: 1.48e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSF---------ILSKQRQSELILEA---------VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGA 68
Cdd:cd03294 1 IKIKGLYKIFgknpqkafkLLAKGKSKEEILKKtgqtvgvndVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 69 ITFDGNLVTAPNR---------RMSMVFQNFALFPWLTVRQNIMFGLEsqlnsdCQYVDNQI-----DNLINLIGLKGLK 134
Cdd:cd03294 81 VLIDGQDIAAMSRkelrelrrkKISMVFQSFALLPHRTVLENVAFGLE------VQGVPRAEreeraAEALELVGLEGWE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 135 NAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVI 214
Cdd:cd03294 155 HKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ---KTIVFITHDLDEALRLGDRI 231
|
250 260
....*....|....*....|
gi 922315154 215 YVLggKPAQIMntyQIKTPR 234
Cdd:cd03294 232 AIM--KDGRLV---QVGTPE 246
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-217 |
3.70e-56 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 187.80 E-value: 3.70e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFILSKQRQSElILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN--- 80
Cdd:COG1123 258 EPLLEVRNLSKRYPVRGKGGVR-AVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSrrs 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 -----RRMSMVFQN-FA-LFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFA 152
Cdd:COG1123 337 lrelrRRVQMVFQDpYSsLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIA 416
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 153 RALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG1123 417 RALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGL---TYLFISHDLAVVRYIADRVAVM 478
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
7-217 |
6.54e-56 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 177.38 E-value: 6.54e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilsKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN------ 80
Cdd:cd03229 1 LELKNVSKRY---GQKT---VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEdelppl 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 -RRMSMVFQNFALFPWLTVRQNIMFGlesqlnsdcqyvdnqidnlinliglkglknaypyeLSGGMKQRVGFARALAVEP 159
Cdd:cd03229 75 rRRIGMVFQDFALFPHLTVLENIALG-----------------------------------LSGGQQQRVALARALAMDP 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 160 ELLLLDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGI---TVVLVTHDLDEAARLADRVVVL 174
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
6-240 |
1.24e-55 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 178.65 E-value: 1.24e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN----- 80
Cdd:COG1126 1 MIEIENLHKSF------GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKkdink 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 --RRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVE 158
Cdd:COG1126 75 lrRKVGMVFQQFNLFPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAME 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 159 PELLLLDEPFSALD-VLTG------QRLGQDLITlwerrkfkmqaIVLITHNISEAVRLSD-VIYVLGGK------PAQI 224
Cdd:COG1126 155 PKVMLFDEPTSALDpELVGevldvmRDLAKEGMT-----------MVVVTHEMGFAREVADrVVFMDGGRiveegpPEEF 223
|
250
....*....|....*.
gi 922315154 225 mntyqIKTPRNQRTEQ 240
Cdd:COG1126 224 -----FENPQHERTRA 234
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
7-230 |
7.42e-55 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 176.66 E-value: 7.42e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA--PNRR-M 83
Cdd:cd03300 1 IELENVSKFY------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNlpPHKRpV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQNFALFPWLTVRQNIMFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:cd03300 75 NTVFQNYALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 164 LDEPFSALDVltgqRLGQDL-ITLWERRKFKMQAIVLITHNISEAVRLSDVIYVLG-GKPAQIMNTYQI 230
Cdd:cd03300 154 LDEPLGALDL----KLRKDMqLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNkGKIQQIGTPEEI 218
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
7-224 |
2.49e-53 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 176.03 E-value: 2.49e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APNRR-M 83
Cdd:COG3839 4 LELENVSKSY------GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTdlPPKDRnI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQNFALFPWLTVRQNIMFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:COG3839 78 AMVFQSYALYPHMTVYENIAFPLKLR-KVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922315154 164 LDEPFSALDVLTGQRLGQDLITLWERRKFKMqaiVLITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:COG3839 157 LDEPLSNLDAKLRVEMRAEIKRLHRRLGTTT---IYVTHDQVEAMTLADRIAVMnDGRIQQV 215
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
7-218 |
4.19e-53 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 171.92 E-value: 4.19e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN------ 80
Cdd:cd03261 1 IELRGLTKSF------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSeaelyr 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 --RRMSMVFQNFALFPWLTVRQNIMFGLESQLnsdcQYVDNQIDNL----INLIGLKGLKNAYPYELSGGMKQRVGFARA 154
Cdd:cd03261 75 lrRRMGMLFQSGALFDSLTVFENVAFPLREHT----RLSEEEIREIvlekLEAVGLRGAEDLYPAELSGGMKKRVALARA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 155 LAVEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYVLG 218
Cdd:cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSL--KKELGL-TSIMVTHDLDTAFAIADRIAVLY 211
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
7-227 |
5.75e-53 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 172.10 E-value: 5.75e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----R 81
Cdd:cd03295 1 IEFENVTKRY-----GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDpvelrR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPWLTVRQNImfGLESQLNS-DCQYVDNQIDNLINLIGL--KGLKNAYPYELSGGMKQRVGFARALAVE 158
Cdd:cd03295 76 KIGYVIQQIGLFPHMTVEENI--ALVPKLLKwPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAAD 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 159 PELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMNT 227
Cdd:cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELG---KTIVFVTHDIDEAFRLADRIAIMKngeivqvGTPDEILRS 226
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
39-217 |
1.76e-52 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 169.78 E-value: 1.76e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 39 QFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG--------NLVTAP-NRRMSMVFQNFALFPWLTVRQNIMFGLESQ 109
Cdd:cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdsrkKINLPPqQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 110 LNSDCQYvdnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWER 189
Cdd:cd03297 104 RNREDRI---SVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180
|
170 180
....*....|....*....|....*...
gi 922315154 190 rkFKMQAIvLITHNISEAVRLSDVIYVL 217
Cdd:cd03297 181 --LNIPVI-FVTHDLSEAEYLADRIVVM 205
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
6-244 |
2.29e-52 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 171.04 E-value: 2.29e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHvsksfiLSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSM 85
Cdd:PRK11248 1 MLQISH------LYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLiNLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLD 165
Cdd:PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML-KKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 166 EPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLGGKPAQIMNTYQIKTPRNQRTEQQIRA 244
Cdd:PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETG---KQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLNFARRFVAGESSRS 229
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
4-220 |
3.09e-52 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 169.45 E-value: 3.09e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFILSKQRQSelILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAP---- 79
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGEVT--ALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLsere 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 80 -----NRRMSMVFQNFALFPWLTVRQNIMFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARA 154
Cdd:COG1136 80 larlrRRHIGFVFQFFNLLPELTALENVALPLLLA-GVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 155 LAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:COG1136 159 LVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELG---TTIVMVTHDPELAARADRVIRLRDGR 221
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
7-217 |
3.38e-52 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 169.21 E-value: 3.38e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAP------- 79
Cdd:cd03255 1 IELKNLSKTY--GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLsekelaa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 80 --NRRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:cd03255 79 frRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE-RAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 158 EPELLLLDEPFSALDVLTGQRLgQDLITlwERRKFKMQAIVLITHNIsEAVRLSDVIYVL 217
Cdd:cd03255 158 DPKIILADEPTGNLDSETGKEV-MELLR--ELNKEAGTTIVVVTHDP-ELAEYADRIIEL 213
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
7-230 |
8.96e-52 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 168.28 E-value: 8.96e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSksFILSKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----R 81
Cdd:COG1122 1 IELENLS--FSYPGGTP---ALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNlrelrR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQN-----FALfpwlTVRQNIMFGLEsQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALA 156
Cdd:COG1122 76 KVGLVFQNpddqlFAP----TVEEDVAFGPE-NLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 157 VEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMNTYQ 229
Cdd:COG1122 151 MEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGK----TVIIVTHDLDLVAELADRVIVLDdgrivadGTPREVFSDYE 226
|
.
gi 922315154 230 I 230
Cdd:COG1122 227 L 227
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
18-224 |
1.70e-51 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 168.29 E-value: 1.70e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT---APNRRMSMVFQNFALFP 94
Cdd:cd03296 8 VSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATdvpVQERNVGFVFQHYALFR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 95 WLTVRQNIMFGLESQLNS---DCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:cd03296 88 HMTVFDNVAFGLRVKPRSerpPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 172 DVLTGQRLGQdlitlWERRKFKMQAI--VLITHNISEAVRLSDVIYVLG-GKPAQI 224
Cdd:cd03296 168 DAKVRKELRR-----WLRRLHDELHVttVFVTHDQEEALEVADRVVVMNkGRIEQV 218
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
6-220 |
2.38e-51 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 167.30 E-value: 2.38e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRM-- 83
Cdd:cd03257 1 LLEVKNLSVSF--PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLrk 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 ------SMVFQN--FALFPWLTVRQNIMFGLESQ--LNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFAR 153
Cdd:cd03257 79 irrkeiQMVFQDpmSSLNPRMTIGEQIAEPLRIHgkLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIAR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 154 ALAVEPELLLLDEPFSALDVLTgQRLGQDLITLwERRKFKMqAIVLITHNISEAVRLSDVIYVL-GGK 220
Cdd:cd03257 159 ALALNPKLLIADEPTSALDVSV-QAQILDLLKK-LQEELGL-TLLFITHDLGVVAKIADRVAVMyAGK 223
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
9-209 |
3.32e-51 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 166.99 E-value: 3.32e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 9 VDHVSKSFilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-------- 80
Cdd:cd03258 4 LKNVSKVF--GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSgkelrkar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 RRMSMVFQNFALFPWLTVRQNIMFGLESqLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPE 160
Cdd:cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEI-AGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 922315154 161 LLLLDEPFSALDVLTGQ---RLGQDLitlweRRKFKMqAIVLITHNIsEAVR 209
Cdd:cd03258 161 VLLCDEATSALDPETTQsilALLRDI-----NRELGL-TIVLITHEM-EVVK 205
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
9-202 |
1.16e-50 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 169.10 E-value: 1.16e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 9 VDHVSKSFilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-------- 80
Cdd:COG1135 4 LENLSKTF--PTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSerelraar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 RRMSMVFQNFALFPWLTVRQNIMFGLEsQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPE 160
Cdd:COG1135 82 RKIGMIFQHFNLLSSRTVAENVALPLE-IAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 922315154 161 LLLLDEPFSALDVLTGQ---RLGQDLitlweRRKFKMqAIVLITH 202
Cdd:COG1135 161 VLLCDEATSALDPETTRsilDLLKDI-----NRELGL-TIVLITH 199
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
7-228 |
1.67e-50 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 165.24 E-value: 1.67e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN---RR 82
Cdd:COG1131 1 IEVRGLTKRY------GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGeDVARDPAevrRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQNFALFPWLTVRQNI-----MFGLesqlnsDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:COG1131 75 IGYVPQEPALYPDLTVRENLrffarLYGL------PRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLH 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 158 EPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMNTY 228
Cdd:COG1131 149 DPELLILDEPTSGLDPEARRELWELLRELAAEGK----TVLLSTHYLEEAERLCDRVAIIDkgrivadGTPDELKARL 222
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
7-237 |
4.08e-50 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 164.43 E-value: 4.08e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrqSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--AP-NRRM 83
Cdd:cd03299 1 LKVENLSKDW-------KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITnlPPeKRDI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQNFALFPWLTVRQNIMFGLESQLNSDCQyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:cd03299 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE-IERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 164 LDEPFSALDVLTGQRLGQDLITLweRRKFKMQAIvLITHNISEAVRLSD-VIYVLGGKPAQIMNTYQI-KTPRNQR 237
Cdd:cd03299 153 LDEPFSALDVRTKEKLREELKKI--RKEFGVTVL-HVTHDFEEAWALADkVAIMLNGKLIQVGKPEEVfKKPKNEF 225
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
9-217 |
7.01e-50 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 163.02 E-value: 7.01e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 9 VDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRM 83
Cdd:cd03225 2 LKNLSFSY----PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSlkelrRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQN-----FALfpwlTVRQNIMFGLEsQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVE 158
Cdd:cd03225 78 GLVFQNpddqfFGP----TVEEEVAFGLE-NLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 159 PELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGK----TIIIVTHDLDLLLELADRVIVL 207
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-217 |
2.02e-49 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 163.05 E-value: 2.02e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQRQSelILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAP-----N 80
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVP--VLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRrrkafR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 RRMSMVFQNF--ALFPWLTVRQNIMFGLESQLNSDcqyVDNQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:COG1124 79 RRVQMVFQDPyaSLHPRHTVDRILAEPLRIHGLPD---REERIAELLEQVGLpPSFLDRYPHQLSGGQRQRVAIARALIL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 158 EPELLLLDEPFSALDVLTgQ----RLGQDLitlweRRKFKMqAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG1124 156 EPELLLLDEPTSALDVSV-QaeilNLLKDL-----REERGL-TYLFVSHDLAVVAHLCDRVAVM 212
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
7-224 |
2.31e-49 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 161.65 E-value: 2.31e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APNRR-M 83
Cdd:cd03301 1 VELENVTKRF------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTdlPPKDRdI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQNFALFPWLTVRQNIMFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:cd03301 75 AMVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922315154 164 LDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLG---TTTIYVTHDQVEAMTMADRIAVMnDGQIQQI 212
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
7-233 |
2.36e-49 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 166.03 E-value: 2.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFILSKqrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT---APNRRM 83
Cdd:PRK10851 3 IEIANIKKSFGRTQ------VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSrlhARDRKV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQNFALFPWLTVRQNIMFGL-----ESQLNSDcqYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVE 158
Cdd:PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLtvlprRERPNAA--AIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 159 PELLLLDEPFSALDVLTGQRLGQDLITLWERRKFKMqaiVLITHNISEAVRLSDVIYVLGGKpaqimNTYQIKTP 233
Cdd:PRK10851 155 PQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS---VFVTHDQEEAMEVADRVVVMSQG-----NIEQAGTP 221
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
22-227 |
3.61e-46 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 154.14 E-value: 3.61e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 22 RQSELILEAvSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APNRR-MSMVFQNFALFPWLTV 98
Cdd:COG3840 10 RYGDFPLRF-DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTalPPAERpVSMLFQENNLFPHLTV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNIMFGLES--QLNSDCQyvdNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDvltg 176
Cdd:COG3840 89 AQNIGLGLRPglKLTAEQR---AQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALD---- 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 922315154 177 QRLGQDLITLWERRKFKMQAIVL-ITHNISEAVRLSD-VIYVLGGKPAQIMNT 227
Cdd:COG3840 162 PALRQEMLDLVDELCRERGLTVLmVTHDPEDAARIADrVLLVADGRIAADGPT 214
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
7-220 |
2.21e-45 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 151.53 E-value: 2.21e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN------ 80
Cdd:cd03262 1 IEIKNLHKSF------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKkninel 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 -RRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEP 159
Cdd:cd03262 75 rQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 160 ELLLLDEPFSALD------VL-TGQRLGQDLITlwerrkfkmqaIVLITHNISEAVRLSD-VIYVLGGK 220
Cdd:cd03262 155 KVMLFDEPTSALDpelvgeVLdVMKDLAEEGMT-----------MVVVTHEMGFAREVADrVIFMDDGR 212
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
43-224 |
4.38e-45 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 154.19 E-value: 4.38e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 43 IIGSSGVGKSTLLRMIAGIIRPSYGAITFDG---NLVTAPNRRMSMVFQNFALFPWLTVRQNIMFGLESQlNSDCQYVDN 119
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGedvTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRAEIKP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 120 QIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVL 199
Cdd:TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI---TFVF 156
|
170 180
....*....|....*....|....*.
gi 922315154 200 ITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:TIGR01187 157 VTHDQEEAMTMSDRIAIMrKGKIAQI 182
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
7-217 |
8.14e-45 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 148.70 E-value: 8.14e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilsKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN---RR 82
Cdd:cd03230 1 IEVRNLSKRY---GKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGkDIKKEPEevkRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQNFALFPWLTVRQNImfglesqlnsdcqyvdnqidnlinliglkglknaypyELSGGMKQRVGFARALAVEPELL 162
Cdd:cd03230 75 IGYLPEEPSLYENLTVRENL-------------------------------------KLSGGMKQRLALAQALLHDPELL 117
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 163 LLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGK----TILLSSHILEEAERLCDRVAIL 168
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-220 |
9.47e-45 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 152.90 E-value: 9.47e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQRqseliLEAV---SLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSY---GAITFDG-NLVTA 78
Cdd:COG0444 1 LLEVRNLKVYFPTRRGV-----VKAVdgvSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGitsGEILFDGeDLLKL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 79 PN--------RRMSMVFQNF--ALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGL---KGLKNAYPYELSGGM 145
Cdd:COG0444 76 SEkelrkirgREIQMIFQDPmtSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLpdpERRLDRYPHELSGGM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 146 KQRVGFARALAVEPELLLLDEPFSALDVLTgQR----LGQDLitlweRRKFKMqAIVLITHNISEAVRLSDVIYVL-GGK 220
Cdd:COG0444 156 RQRVMIARALALEPKLLIADEPTTALDVTI-QAqilnLLKDL-----QRELGL-AILFITHDLGVVAEIADRVAVMyAGR 228
|
|
| ABC_choXWV_ATP |
TIGR03415 |
choline ABC transporter, ATP-binding protein; Members of this protein family are the ... |
31-224 |
1.48e-44 |
|
choline ABC transporter, ATP-binding protein; Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 188317 [Multi-domain] Cd Length: 382 Bit Score: 154.17 E-value: 1.48e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAI---TFDG--NLVTAP--------NRRMSMVFQNFALFPWLT 97
Cdd:TIGR03415 43 ASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVlvkDGDGsvDVANCDaatlrrlrTHRVSMVFQQFALLPWRT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 VRQNIMFGLESQLNSDCQYVDnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQ 177
Cdd:TIGR03415 123 VEENVAFGLEMQGMPKAERRK-RVDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 922315154 178 RLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLG-------GKPAQI 224
Cdd:TIGR03415 202 QLQDELLELQSKLK---KTIVFVSHDLDEALKIGNRIAIMEggriiqhGTPEEI 252
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
4-226 |
7.20e-44 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 149.03 E-value: 7.20e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFilskqrqSEL-ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APN 80
Cdd:COG0411 2 DPLLEVRGLTKRF-------GGLvAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITglPPH 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 RR----MSMVFQNFALFPWLTVRQNIMFGLESQLNS--------------DCQYVDNQIDNLINLIGLKGLKNAYPYELS 142
Cdd:COG0411 75 RIarlgIARTFQNPRLFPELTVLENVLVAAHARLGRgllaallrlprarrEEREARERAEELLERVGLADRADEPAGNLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 143 GGMKQRVGFARALAVEPELLLLDEPFSAL-DVLTgQRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYVL--G- 218
Cdd:COG0411 155 YGQQRRLEIARALATEPKLLLLDEPAAGLnPEET-EELAELIRRL--RDERGI-TILLIEHDMDLVMGLADRIVVLdfGr 230
|
250
....*....|..
gi 922315154 219 ----GKPAQIMN 226
Cdd:COG0411 231 viaeGTPAEVRA 242
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
10-205 |
9.62e-44 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 147.51 E-value: 9.62e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 10 DHVSKSFilskqRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN-------R 81
Cdd:COG2884 5 ENVSKRY-----PGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGqDLSRLKRreipylrR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPWLTVRQNIMFGLESQLNSDcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPEL 161
Cdd:COG2884 80 RIGVVFQDFRLLPDRTVYENVALPLRVTGKSR-KEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPEL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 922315154 162 LLLDEPFSALDvltgQRLGQDLITLWERrkFKMQ--AIVLITHNIS 205
Cdd:COG2884 159 LLADEPTGNLD----PETSWEIMELLEE--INRRgtTVLIATHDLE 198
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
6-217 |
1.19e-43 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 148.08 E-value: 1.19e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN---R 81
Cdd:COG4555 1 MIEVENLSKKY------GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGeDVRKEPRearR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPEL 161
Cdd:COG4555 75 QIGVLPDERGLYDRLTVRENIRYFAELYGLFDEE-LKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKV 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 162 LLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG4555 154 LLLDEPTNGLDVMARRLLREILRALKKEGK----TVLFSSHIMQEVEALCDRVVIL 205
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
28-169 |
2.16e-43 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 144.33 E-value: 2.16e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT-----APNRRMSMVFQNFALFPWLTVRQNI 102
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTdderkSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 103 MFGLESQLNSDcQYVDNQIDNLINLIGLKGLKN----AYPYELSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:pfam00005 81 RLGLLLKGLSK-REKDARAEEALEKLGLGDLADrpvgERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
20-217 |
1.29e-42 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 148.33 E-value: 1.29e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 20 KQRQSELILEaVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNL---------VTAPNRRMSMVFQNF 90
Cdd:COG4148 8 RLRRGGFTLD-VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVlqdsargifLPPHRRRIGYVFQEA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 91 ALFPWLTVRQNIMFGLESQLNSDCQYvdnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSA 170
Cdd:COG4148 87 RLFPHLSVRGNLLYGRKRAPRAERRI---SFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 922315154 171 LDvltgQRLGQDLITLWER--RKFKMqAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG4148 164 LD----LARKAEILPYLERlrDELDI-PILYVSHSLDEVARLADHVVLL 207
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-226 |
2.32e-42 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 144.85 E-value: 2.32e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAVLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN 80
Cdd:COG1121 1 MMMMPAIELENLTVSY------GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 RRMSMVFQNFAL---FPwLTVRQNIMFGLESQLN-------SDCQyvdnQIDNLINLIGLKGLKNAYPYELSGGMKQRVG 150
Cdd:COG1121 75 RRIGYVPQRAEVdwdFP-ITVRDVVLMGRYGRRGlfrrpsrADRE----AVDEALERVGLEDLADRPIGELSGGQQQRVL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 151 FARALAVEPELLLLDEPFSALDVLTGQRLgQDLITlwERRKFKMqAIVLITHNISEAVRLSDVIYVLG------GKPAQI 224
Cdd:COG1121 150 LARALAQDPDLLLLDEPFAGVDAATEEAL-YELLR--ELRREGK-TILVVTHDLGAVREYFDRVLLLNrglvahGPPEEV 225
|
..
gi 922315154 225 MN 226
Cdd:COG1121 226 LT 227
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
7-226 |
3.70e-42 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 143.73 E-value: 3.70e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrqSELI-LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA--PNRR- 82
Cdd:cd03219 1 LEVRGLTKRF-------GGLVaLDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGlpPHEIa 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 ---MSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQY---------VDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVG 150
Cdd:cd03219 74 rlgIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLararreereARERAEELLERVGLADLADRPAGELSYGQQRRLE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 151 FARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL--G-----GKPAQ 223
Cdd:cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGI----TVLLVEHDMDVVMSLADRVTVLdqGrviaeGTPDE 229
|
...
gi 922315154 224 IMN 226
Cdd:cd03219 230 VRN 232
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
6-229 |
8.81e-42 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 149.67 E-value: 8.81e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPS---YGAITFDG-NLVTAPN- 80
Cdd:COG1123 4 LLEVRDLSVRY----PGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGrDLLELSEa 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQNF--ALFPwLTVRQNIMFGLESQLNSDCQyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARAL 155
Cdd:COG1123 80 lrgRRIGMVFQDPmtQLNP-VTVGDQIAEALENLGLSRAE-ARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 156 AVEPELLLLDEPFSALDVlTGQRLGQDLITlwERRKFKMQAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMNTY 228
Cdd:COG1123 158 ALDPDLLIADEPTTALDV-TTQAEILDLLR--ELQRERGTTVLLITHDLGVVAEIADRVVVMDdgrivedGPPEEILAAP 234
|
.
gi 922315154 229 Q 229
Cdd:COG1123 235 Q 235
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
7-220 |
1.57e-41 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 142.89 E-value: 1.57e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilsKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMV 86
Cdd:PRK11247 13 LLLNAVSKRY---GERT---VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 87 FQNFALFPWLTVRQNIMFGLESQLNSDCQYVdnqidnlINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQA-------LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 167 PFSALDVLTgqRLG-QDLI-TLWERRKFkmqAIVLITHNISEAVRLSD-VIYVLGGK 220
Cdd:PRK11247 160 PLGALDALT--RIEmQDLIeSLWQQHGF---TVLLVTHDVSEAVAMADrVLLIEEGK 211
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
18-217 |
7.30e-41 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 139.57 E-value: 7.30e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQNFAL 92
Cdd:COG4619 6 LSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPppewrRQVAYVPQEPAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 93 FPwLTVRQNIMFGLEsqlNSDCQYVDNQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:COG4619 86 WG-GTVRDNLPFPFQ---LRERKFDRERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSAL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 922315154 172 DVLTGQRLgQDLITLWERRKFKmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG4619 162 DPENTRRV-EELLREYLAEEGR--AVLWVSHDPEQIERVADRVLTL 204
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-218 |
7.55e-41 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 142.95 E-value: 7.55e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAVLLDVDHVSKSFILSK---QRQSELI--LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNL 75
Cdd:COG4608 2 AMAEPLLEVRDLKKHFPVRGglfGRTVGVVkaVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 76 VTAPN--------RRMSMVFQN-FA-LFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLK-GLKNAYPYELSGG 144
Cdd:COG4608 82 ITGLSgrelrplrRRMQMVFQDpYAsLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRpEHADRYPHEFSGG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 145 MKQRVGFARALAVEPELLLLDEPFSALDV------LTgqrLGQDLitlweRRKFKMqAIVLITHNISeAVR-LSD---VI 214
Cdd:COG4608 162 QRQRIGIARALALNPKLIVCDEPVSALDVsiqaqvLN---LLEDL-----QDELGL-TYLFISHDLS-VVRhISDrvaVM 231
|
....
gi 922315154 215 YvLG 218
Cdd:COG4608 232 Y-LG 234
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
6-224 |
9.68e-41 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 144.21 E-value: 9.68e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAP--NRR 82
Cdd:PRK11607 19 LLEIRNLTKSF------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGvDLSHVPpyQRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELL 162
Cdd:PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE-IASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922315154 163 LLDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVLG-GKPAQI 224
Cdd:PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGV---TCVMVTHDQEEAMTMAGRIAIMNrGKFVQI 231
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
18-230 |
1.87e-40 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 139.24 E-value: 1.87e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGII-----RPSYGAITFDGNLVTAPN-------RRMSM 85
Cdd:cd03260 6 LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIYDLDvdvlelrRRVGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFPwLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKG--LKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:cd03260 86 VFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDevKDRLHALGLSGGQQQRLCLARALANEPEVLL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 164 LDEPFSALDVLTGQRLgQDLItlwerRKFKMQ-AIVLITHNISEAVRLSD-VIYVLGGKPAQIMNTYQI 230
Cdd:cd03260 165 LDEPTSALDPISTAKI-EELI-----AELKKEyTIVIVTHNMQQAARVADrTAFLLNGRLVEFGPTEQI 227
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
18-226 |
2.94e-40 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 139.41 E-value: 2.94e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQNFAL 92
Cdd:COG1120 7 LSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSrrelaRRIAYVPQEPPA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 93 FPWLTVRQNIMFG------LESQLNSDcqyvDNQI-DNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLD 165
Cdd:COG1120 87 PFGLTVRELVALGryphlgLFGRPSAE----DREAvEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLD 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 166 EPFSALD------VLtgqrlgqDLITlwERRKFKMQAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMN 226
Cdd:COG1120 163 EPTSHLDlahqleVL-------ELLR--RLARERGRTVVMVLHDLNLAARYADRLVLLKdgrivaqGPPEEVLT 227
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
7-214 |
8.49e-40 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 138.08 E-value: 8.49e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFILSKQRqseliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--------A 78
Cdd:cd03256 1 IEVENLSKTYPNGKKA-----LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINklkgkalrQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 79 PNRRMSMVFQNFALFPWLTVRQNIMFGLESQLNSdcqyvdnqIDNLINL---------------IGLKGLKNAYPYELSG 143
Cdd:cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRST--------WRSLFGLfpkeekqralaalerVGLLDKAYQRADQLSG 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 144 GMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMQAIVLItHNISEAVRLSDVI 214
Cdd:cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRI--NREEGITVIVSL-HQVDLAREYADRI 215
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
18-202 |
1.33e-39 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 136.45 E-value: 1.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT----APNRRMSMVFQNFALF 93
Cdd:COG4133 8 LSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRdareDYRRRLAYLGHADGLK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 94 PWLTVRQNIMFgleSQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDV 173
Cdd:COG4133 88 PELTVRENLRF---WAALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDA 164
|
170 180
....*....|....*....|....*....
gi 922315154 174 LTGQRLGQdLITLWERRKfkmQAIVLITH 202
Cdd:COG4133 165 AGVALLAE-LIAAHLARG---GAVLLTTH 189
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-224 |
1.96e-39 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 140.47 E-value: 1.96e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAVLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--- 77
Cdd:PRK09452 9 SSLSPLVELRGISKSF------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIThvp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 78 APNRRMSMVFQNFALFPWLTVRQNIMFGLEsqlnsdCQYVDNQ------IDNLiNLIGLKGLKNAYPYELSGGMKQRVGF 151
Cdd:PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLR------MQKTPAAeitprvMEAL-RMVQLEEFAQRKPHQLSGGQQQRVAI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 152 ARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL--QRKLGI-TFVFVTHDQEEALTMSDRIVVMrDGRIEQD 226
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
20-237 |
2.90e-39 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 139.86 E-value: 2.90e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 20 KQRQSELILEaVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNL---------VTAPNRRMSMVFQNF 90
Cdd:TIGR02142 6 SKRLGDFSLD-ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTlfdsrkgifLPPEKRRIGYVFQEA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 91 ALFPWLTVRQNIMFGLesqlnSDCQYVDNQI--DNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:TIGR02142 85 RLFPHLSVRGNLRYGM-----KRARPSERRIsfERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 169 SALDvltgQRLGQDLITLWER--RKFKMqAIVLITHNISEAVRLSDVIYVL-------GGKPAQIMNTYQIKT-PRNQR 237
Cdd:TIGR02142 160 AALD----DPRKYEILPYLERlhAEFGI-PILYVSHSLQEVLRLADRVVVLedgrvaaAGPIAEVWASPDLPWlAREDQ 233
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
23-221 |
9.42e-39 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 134.58 E-value: 9.42e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 23 QSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMVFQNFAL---FPwLTVR 99
Cdd:cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIdrdFP-ISVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 100 QNIMFGLESQLN-------SDCQYVDNQIDnlinLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:cd03235 89 DVVLMGLYGHKGlfrrlskADKAKVDEALE----RVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 922315154 173 VLTgqrlGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVLGGKP 221
Cdd:cd03235 165 PKT----QEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
6-212 |
1.00e-38 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 135.57 E-value: 1.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN----- 80
Cdd:COG3638 2 MLELRNLSKRYPGGTP-----ALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRgralr 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQNFALFPWLTVRQNIMFGLESQLNSdcqyvdnqIDNLINLI---------------GLKGLKNAYPYELS 142
Cdd:COG3638 77 rlrRRIGMIFQQFNLVPRLSVLTNVLAGRLGRTST--------WRSLLGLFppedreralealervGLADKAYQRADQLS 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 143 GGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLIT-HNISEAVRLSD 212
Cdd:COG3638 149 GGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDG----ITVVVNlHQVDLARRYAD 215
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-202 |
6.12e-38 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 132.94 E-value: 6.12e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFilsKQRQSEL-ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-- 80
Cdd:COG4181 6 APIIELRGLTKTV---GTGAGELtILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDed 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 -------RRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQyvdNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFAR 153
Cdd:COG4181 83 ararlraRHVGFVFQSFQLLPTLTALENVMLPLELAGRRDAR---ARARALLERVGLGHRLDHYPAQLSGGEQQRVALAR 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 922315154 154 ALAVEPELLLLDEPFSALDVLTGQRLgQDLItlwerrkFKMQA-----IVLITH 202
Cdd:COG4181 160 AFATEPAILFADEPTGNLDAATGEQI-IDLL-------FELNRergttLVLVTH 205
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
12-237 |
2.12e-37 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 131.75 E-value: 2.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 12 VSKSFILSKqrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-------RRMS 84
Cdd:PRK09493 7 VSKHFGPTQ------VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKvderlirQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 85 MVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLL 164
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 165 DEPFSALD------VLT-GQRLGQDLITLwerrkfkmqaiVLITHNISEAVRL-SDVIYVLGGKPAQIMNTYQ-IKTPRN 235
Cdd:PRK09493 161 DEPTSALDpelrheVLKvMQDLAEEGMTM-----------VIVTHEIGFAEKVaSRLIFIDKGRIAEDGDPQVlIKNPPS 229
|
..
gi 922315154 236 QR 237
Cdd:PRK09493 230 QR 231
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
18-220 |
4.04e-37 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 131.81 E-value: 4.04e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR--------RMSMVFQN 89
Cdd:PRK11831 13 VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRsrlytvrkRMSMLFQS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 90 FALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFs 169
Cdd:PRK11831 93 GALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF- 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 170 aldvltgqrLGQDLITLWERRKFKMQ-------AIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:PRK11831 172 ---------VGQDPITMGVLVKLISElnsalgvTCVVVSHDVPEVLSIADHAYIVADK 220
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
32-222 |
1.11e-36 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 129.15 E-value: 1.11e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 32 SLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA--PNRR-MSMVFQNFALFPWLTVRQNIMFGLES 108
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAapPADRpVSMLFQENNLFAHLTVEQNVGLGLSP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 109 QLNsdCQYVDNQ-IDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLw 187
Cdd:cd03298 98 GLK--LTAEDRQaIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL- 174
|
170 180 190
....*....|....*....|....*....|....*.
gi 922315154 188 eRRKFKMqAIVLITHNISEAVRLSD-VIYVLGGKPA 222
Cdd:cd03298 175 -HAETKM-TVLMVTHQPEDAKRLAQrVVFLDNGRIA 208
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
11-202 |
2.47e-36 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 131.46 E-value: 2.47e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 11 HVSKSFilsKQRQSELI-LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN--------R 81
Cdd:PRK11153 6 NISKVF---PQGGRTIHaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSekelrkarR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPWLTVRQNIMFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPEL 161
Cdd:PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 922315154 162 LLLDEPFSALDVLTGQ-----------RLGqdlITlwerrkfkmqaIVLITH 202
Cdd:PRK11153 162 LLCDEATSALDPATTRsilellkdinrELG---LT-----------IVLITH 199
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
12-226 |
2.56e-36 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 132.85 E-value: 2.56e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 12 VSKSFILSKQRQSeLILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG---------NLVTAPNRR 82
Cdd:PRK10070 29 LSKEQILEKTGLS-LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGvdiakisdaELREVRRKK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLiNLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELL 162
Cdd:PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDAL-RQVGLENYAHSYPDELSGGMRQRVGLARALAINPDIL 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 163 LLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMN 226
Cdd:PRK10070 187 LMDEAFSALDPLIRTEMQDELVKLQAKHQ---RTIVFISHDLDEAMRIGDRIAIMQngevvqvGTPDEILN 254
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
18-217 |
2.84e-36 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 126.21 E-value: 2.84e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQnfal 92
Cdd:cd00267 5 LSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPleelrRRIGYVPQ---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 93 fpwltvrqnimfglesqlnsdcqyvdnqidnlinliglkglknaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:cd00267 81 ------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 922315154 173 VLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd00267 113 PASRERLLELLRELAEEGR----TVIIVTHDPELAELAADRVIVL 153
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
7-226 |
1.06e-35 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 127.93 E-value: 1.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN----- 80
Cdd:TIGR04520 1 IEVENVSFSY----PESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGlDTLDEENlweir 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 RRMSMVFQNfalfP-----WLTVRQNIMFGLEsqlnsdcqyvdNQ----------IDNLINLIGLKGLKNAYPYELSGGM 145
Cdd:TIGR04520 77 KKVGMVFQN----PdnqfvGATVEDDVAFGLE-----------NLgvpreemrkrVDEALKLVGMEDFRDREPHLLSGGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 146 KQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVrLSDVIYVLG------- 218
Cdd:TIGR04520 142 KQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKL--NKEEGI-TVISITHDMEEAV-LADRVIVMNkgkivae 217
|
....*...
gi 922315154 219 GKPAQIMN 226
Cdd:TIGR04520 218 GTPREIFS 225
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
6-217 |
3.39e-35 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 125.56 E-value: 3.39e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAP---NR 81
Cdd:cd03266 1 MITADALTKRF--RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGfDVVKEPaeaRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPWLTVRQNIMF-----GLESQLNSDcqyvdnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALA 156
Cdd:cd03266 79 RLGFVSDSTGLYDRLTARENLEYfaglyGLKGDELTA------RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 157 VEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK----CILFSTHIMQEVERLCDRVVVL 209
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
32-210 |
3.90e-35 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 125.46 E-value: 3.90e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 32 SLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGN--LVTAPNRR-MSMVFQNFALFPWLTVRQNIMFGLES 108
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQdhTTTPPSRRpVSMLFQENNLFSHLTVAQNIGLGLNP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 109 --QLNSDCQyvdNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDvltgQRLGQDLITL 186
Cdd:PRK10771 99 glKLNAAQR---EKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRQEMLTL 171
|
170 180
....*....|....*....|....*...
gi 922315154 187 WE----RRKFKMqaiVLITHNISEAVRL 210
Cdd:PRK10771 172 VSqvcqERQLTL---LMVSHSLEDAARI 196
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
6-231 |
5.63e-35 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 125.49 E-value: 5.63e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN----- 80
Cdd:TIGR02315 1 MLEVENLSKVYPNGKQ-----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRgkklr 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQNFALFPWLTVRQNIMFG-------LESQLNsdcQYVDNQID---NLINLIGLKGLKNAYPYELSGGMKQ 147
Cdd:TIGR02315 76 klrRRIGMIFQHYNLIERLTVLENVLHGrlgykptWRSLLG---RFSEEDKEralSALERVGLADKAYQRADQLSGGQQQ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 148 RVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWErrkfKMQAIVLIT-HNISEAVRLSDVIY-------VLGG 219
Cdd:TIGR02315 153 RVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK----EDGITVIINlHQVDLAKKYADRIVglkageiVFDG 228
|
250
....*....|..
gi 922315154 220 KPAQImNTYQIK 231
Cdd:TIGR02315 229 APSEL-DDEVLR 239
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
7-217 |
6.35e-35 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 123.26 E-value: 6.35e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----R 81
Cdd:cd03228 1 IEFKNVSFSY----PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDleslrK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPwLTVRQNImfglesqlnsdcqyvdnqidnlinliglkglknaypyeLSGGMKQRVGFARALAVEPEL 161
Cdd:cd03228 77 NIAYVPQDPFLFS-GTIRENI--------------------------------------LSGGQRQRIAIARALLRDPPI 117
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 162 LLLDEPFSALDVLTGQRLGQDLitlweRRKFKMQAIVLITHNISeAVRLSDVIYVL 217
Cdd:cd03228 118 LILDEATSALDPETEALILEAL-----RALAKGKTVIVIAHRLS-TIRDADRIIVL 167
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
18-207 |
1.56e-34 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 123.36 E-value: 1.56e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSY---GAITFDGNLVTAPN---RRMSMVFQNFA 91
Cdd:COG4136 7 LTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFsasGEVLLNGRRLTALPaeqRRIGILFQDDL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 92 LFPWLTVRQNIMFGLESQLNSdcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:COG4136 87 LFPHLSVGENLAFALPPTIGR--AQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKL 164
|
170 180 190
....*....|....*....|....*....|....*...
gi 922315154 172 DVLTGQRLGQdlitlWERRKFKMQAI--VLITHNISEA 207
Cdd:COG4136 165 DAALRAQFRE-----FVFEQIRQRGIpaLLVTHDEEDA 197
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
6-205 |
1.66e-34 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 123.51 E-value: 1.66e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT-------- 77
Cdd:TIGR02673 1 MIEFHNVSKAYPGGVA-----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNrlrgrqlp 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 78 APNRRMSMVFQNFALFPWLTVRQNIMFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 922315154 158 EPELLLLDEPFSALDvltgQRLGQDLITLWERRKFKMQAIVLITHNIS 205
Cdd:TIGR02673 155 SPPLLLADEPTGNLD----PDLSERILDLLKRLNKRGTTVIVATHDLS 198
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
7-226 |
1.86e-34 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 123.81 E-value: 1.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilsKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA--PNRR-- 82
Cdd:cd03218 1 LRAENLSKRY---GKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKlpMHKRar 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 --MSMVFQNFALFPWLTVRQNIMFGLESQLNSDcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPE 160
Cdd:cd03218 75 lgIGYLPQEASIFRKLTVEENILAVLEIRGLSK-KEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 161 LLLLDEPFSALDVLTGQRLgQDLItlwerRKFKMQAI-VLIT-HNISEAVRLSDVIYVLG-------GKPAQIMN 226
Cdd:cd03218 154 FLLLDEPFAGVDPIAVQDI-QKII-----KILKDRGIgVLITdHNVRETLSITDRAYIIYegkvlaeGTPEEIAA 222
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
27-226 |
3.41e-34 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 122.93 E-value: 3.41e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APNRR----MSMVFQNFALFPWLTVRQ 100
Cdd:cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITglPPHERaragIGYVPEGRRIFPELTVEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 101 NIMFGLESQLNSDcqyVDNQIDNLINLI-GLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRL 179
Cdd:cd03224 95 NLLLGAYARRRAK---RKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 922315154 180 GQDLITLwerRKFKMqAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMN 226
Cdd:cd03224 172 FEAIREL---RDEGV-TILLVEQNARFALEIADRAYVLErgrvvleGTAAELLA 221
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
7-226 |
6.54e-34 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 122.45 E-value: 6.54e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilsKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTapnrRMSM- 85
Cdd:COG1137 4 LEAENLVKSY---GKRT---VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIT----HLPMh 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 ---------------VFQNfalfpwLTVRQNIMFGLEsQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVG 150
Cdd:COG1137 74 krarlgigylpqeasIFRK------LTVEDNILAVLE-LRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 151 FARALAVEPELLLLDEPFSALDVLTGQRLgQDLItlwerRKFKMQAI-VLIT-HNISEAVRLSDVIYVLG-------GKP 221
Cdd:COG1137 147 IARALATNPKFILLDEPFAGVDPIAVADI-QKII-----RHLKERGIgVLITdHNVRETLGICDRAYIISegkvlaeGTP 220
|
....*
gi 922315154 222 AQIMN 226
Cdd:COG1137 221 EEILN 225
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
18-216 |
8.09e-34 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 121.57 E-value: 8.09e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR---------MSMVFQ 88
Cdd:TIGR03608 4 ISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKkaskfrrekLGYLFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 89 NFALFPWLTVRQNIMFGLESQLNSDCQYvDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:TIGR03608 84 NFALIENETVEENLDLGLKYKKLSKKEK-REKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPT 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 922315154 169 SALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYV 216
Cdd:TIGR03608 163 GSLDPKNRDEVLDLLLELNDEGK----TIIIVTHDPEVAKQADRVIEL 206
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
18-240 |
1.24e-33 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 122.17 E-value: 1.24e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMI-------AGIIRpsYGAITFDG--------NLVTAPNRR 82
Cdd:PRK11264 9 LVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCInlleqpeAGTIR--VGDITIDTarslsqqkGLIRQLRQH 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELL 162
Cdd:PRK11264 87 VGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 163 LLDEPFSALDV-LTGQRLGQDLITLWERRkfkmqAIVLITHNISEAVRLSD-VIYVLGGkpaQIMNTYQIKT----PRNQ 236
Cdd:PRK11264 167 LFDEPTSALDPeLVGEVLNTIRQLAQEKR-----TMVIVTHEMSFARDVADrAIFMDQG---RIVEQGPAKAlfadPQQP 238
|
....
gi 922315154 237 RTEQ 240
Cdd:PRK11264 239 RTRQ 242
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-235 |
4.10e-33 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 123.29 E-value: 4.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAVLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA-- 78
Cdd:PRK11432 1 MTQKNFVVLKNITKRF------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHrs 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 79 -PNRRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:PRK11432 75 iQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE-RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 158 EPELLLLDEPFSALDVLTGQRLGQDLITLWERrkFKMQAIvLITHNISEAVRLSDVIYVLggKPAQIMntyQIKTPRN 235
Cdd:PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSL-YVTHDQSEAFAVSDTVIVM--NKGKIM---QIGSPQE 223
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
18-220 |
7.36e-33 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 118.31 E-value: 7.36e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRmsmvfqnfalfpwlt 97
Cdd:cd03214 5 LSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK--------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 vrqnimfglesQLNSDCQYVdNQIdnlINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQ 177
Cdd:cd03214 70 -----------ELARKIAYV-PQA---LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQI 134
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 178 RLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:cd03214 135 ELLELLRRLARERGK---TVVMVLHDLNLAARYADRVILLKDG 174
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
27-242 |
7.32e-32 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 117.83 E-value: 7.32e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLL----RMIAGIirPSY---GAITFDGNLVTAPN-------RRMSMVFQNFAL 92
Cdd:COG1117 26 ALKDINLDIPENKVTALIGPSGCGKSTLLrclnRMNDLI--PGArveGEILLDGEDIYDPDvdvvelrRRVGMVFQKPNP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 93 FPwLTVRQNIMFGLESQLNSDCQYVDNQI--------------DNLinliglkglkNAYPYELSGGMKQRVGFARALAVE 158
Cdd:COG1117 104 FP-KSIYDNVAYGLRLHGIKSKSELDEIVeeslrkaalwdevkDRL----------KKSALGLSGGQQQRLCIARALAVE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 159 PELLLLDEPFSALDVLTGQRLgQDLIT-LweRRKFkmqAIVLITHNISEAVRLSD-VIYVLGGKPAQIMNTYQI-KTPRN 235
Cdd:COG1117 173 PEVLLMDEPTSALDPISTAKI-EELILeL--KKDY---TIVIVTHNMQQAARVSDyTAFFYLGELVEFGPTEQIfTNPKD 246
|
....*..
gi 922315154 236 QRTEQQI 242
Cdd:COG1117 247 KRTEDYI 253
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
18-237 |
8.65e-32 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 117.76 E-value: 8.65e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITF-----------DGNLVTAPNR----- 81
Cdd:PRK10619 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVngqtinlvrdkDGQLKVADKNqlrll 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 --RMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKG-LKNAYPYELSGGMKQRVGFARALAVE 158
Cdd:PRK10619 91 rtRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIARALAME 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 159 PELLLLDEPFSALDvltgQRLGQDLITLWERRKFKMQAIVLITHNISEAVRLSD-VIYVLGGK------PAQIMNtyQIK 231
Cdd:PRK10619 171 PEVLLFDEPTSALD----PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSShVIFLHQGKieeegaPEQLFG--NPQ 244
|
....*.
gi 922315154 232 TPRNQR 237
Cdd:PRK10619 245 SPRLQQ 250
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
7-217 |
1.06e-31 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 123.02 E-value: 1.06e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN----R 81
Cdd:COG2274 474 IELENVSFRY----PGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGiDLRQIDPaslrR 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPwLTVRQNIMFGlesqlnsDCQYVDNQIDNLINLIGLKGLKNAYP--YE---------LSGGMKQRVG 150
Cdd:COG2274 550 QIGVVLQDVFLFS-GTIRENITLG-------DPDATDEEIIEAARLAGLHDFIEALPmgYDtvvgeggsnLSGGQRQRLA 621
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 151 FARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRkfkmqAIVLITHNISeAVRLSDVIYVL 217
Cdd:COG2274 622 IARALLRNPRILILDEATSALDAETEAIILENLRRLLKGR-----TVIIIAHRLS-TIRLADRIIVL 682
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
20-234 |
1.27e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 117.91 E-value: 1.27e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 20 KQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQN-FALF 93
Cdd:PRK13650 15 KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENvwdirHKIGMVFQNpDNQF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 94 PWLTVRQNIMFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDv 173
Cdd:PRK13650 95 VGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD- 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922315154 174 lTGQRLgqDLITLWERRKFKMQAIVL-ITHNISEaVRLSDVIYVLggKPAQIMNTyqiKTPR 234
Cdd:PRK13650 173 -PEGRL--ELIKTIKGIRDDYQMTVIsITHDLDE-VALSDRVLVM--KNGQVEST---STPR 225
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
26-224 |
1.52e-31 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 119.36 E-value: 1.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 26 LILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG---NLVTAPNRRMSMVFQNFALFPWLTVRQNI 102
Cdd:PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEkrmNDVPPAERGVGMVFQSYALYPHLSVAENM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 103 MFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQD 182
Cdd:PRK11000 97 SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 183 LITLWERRKFKMqaiVLITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:PRK11000 176 ISRLHKRLGRTM---IYVTHDQVEAMTLADKIVVLdAGRVAQV 215
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
20-217 |
3.51e-31 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 118.05 E-value: 3.51e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 20 KQRQSELILEaVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNL---------VTAPNRRMSMVFQNF 90
Cdd:PRK11144 7 KQQLGDLCLT-VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVlfdaekgicLPPEKRRIGYVFQDA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 91 ALFPWLTVRQNIMFGLESQLNSdcqyvdnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSA 170
Cdd:PRK11144 86 RLFPHYKVRGNLRYGMAKSMVA-------QFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 922315154 171 LDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK11144 159 LDLPRKRELLPYLERLAREINI---PILYVSHSLDEILRLADRVVVL 202
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-227 |
4.80e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 120.64 E-value: 4.80e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 3 KAVLLDVDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-- 80
Cdd:COG4987 330 GGPSLELEDVSFRY----PGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDed 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQNFALFPwLTVRQNIMFGL----ESQLNSDCQYVdnQIDNLINliGL-KGLkNAYPYE----LSGGMKQR 148
Cdd:COG4987 406 dlrRRIAVVPQRPHLFD-TTLRENLRLARpdatDEELWAALERV--GLGDWLA--ALpDGL-DTWLGEggrrLSGGERRR 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 149 VGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRkfkmqAIVLITHNISeAVRLSDVIYVLG-------GKP 221
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGR-----TVLLITHRLA-GLERMDRILVLEdgriveqGTH 553
|
....*.
gi 922315154 222 AQIMNT 227
Cdd:COG4987 554 EELLAQ 559
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
31-224 |
6.85e-31 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 117.64 E-value: 6.85e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA--P-NRRMSMVFQNFALFPWLTVRQNIMFGLE 107
Cdd:PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNElePaDRDIAMVFQNYALYPHMSVRENMAYGLK 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 108 SQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDV-------LTGQRLG 180
Cdd:PRK11650 103 IR-GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAklrvqmrLEIQRLH 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 922315154 181 QDLITlwerrkfkmqAIVLITHNISEAVRLSDVIYVL-GGKPAQI 224
Cdd:PRK11650 182 RRLKT----------TSLYVTHDQVEAMTLADRVVVMnGGVAEQI 216
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
7-217 |
7.48e-31 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 114.14 E-value: 7.48e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilsKQRQSeLILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT----APNRR 82
Cdd:cd03263 1 LQIRNLTKTY---KKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRtdrkAARQS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQNFALFPWLTVRQNIMF-----GLESQlnsdcqYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:cd03263 77 LGYCPQFDALFDELTVREHLRFyarlkGLPKS------EIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 158 EPELLLLDEPFSALDVLTgQRLGQDLItLWERrkfKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03263 151 GPSVLLLDEPTSGLDPAS-RRAIWDLI-LEVR---KGRSIILTTHSMDEAEALCDRIAIM 205
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
6-224 |
1.11e-30 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 115.11 E-value: 1.11e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN----- 80
Cdd:PRK13635 5 IIRVEHISFRY----PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETvwdvr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 RRMSMVFQN-FALFPWLTVRQNIMFGLESQLNSDCQYVDnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEP 159
Cdd:PRK13635 81 RQVGMVFQNpDNQFVGATVQDDVAFGLENIGVPREEMVE-RVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 160 ELLLLDEPFSALDVLTGQRLgqdLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVLGGK------PAQI 224
Cdd:PRK13635 160 DIIILDEATSMLDPRGRREV---LETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEileegtPEEI 227
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
19-217 |
3.85e-30 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 111.79 E-value: 3.85e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 19 SKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFdgnlvtapNRRMSMVFQNfalfPWL-- 96
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV--------PGSIAYVSQE----PWIqn 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 -TVRQNIMFGLE------------SQLNSDcqyvdnqIDNLIN----LIGLKGLKnaypyeLSGGMKQRVGFARALAVEP 159
Cdd:cd03250 80 gTIRENILFGKPfdeeryekvikaCALEPD-------LEILPDgdltEIGEKGIN------LSGGQKQRISLARAVYSDA 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 160 ELLLLDEPFSALDVLTGQRLGQDLIT-LWERRKfkmqAIVLITHNIsEAVRLSDVIYVL 217
Cdd:cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILgLLLNNK----TRILVTHQL-QLLPHADQIVVL 200
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
28-245 |
4.37e-30 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 112.95 E-value: 4.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMI--AGIIRPSY---GAITFDGNLVTAPN-------RRMSMVFQNFALFPw 95
Cdd:PRK14239 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPEVtitGSIVYNGHNIYSPRtdtvdlrKEIGMVFQQPNPFP- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 96 LTVRQNIMFGLESQLNSDCQYVDNQIDNliNLIG------LKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:PRK14239 100 MSIYENVVYGLRLKGIKDKQVLDEAVEK--SLKGasiwdeVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTS 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 170 ALDVLTGQRLGQDLITLweRRKFKMqaiVLITHNISEAVRLSD-VIYVLGGKPAQIMNTYQI-KTPRNQRTEQQIRAK 245
Cdd:PRK14239 178 ALDPISAGKIEETLLGL--KDDYTM---LLVTRSMQQASRISDrTGFFLDGDLIEYNDTKQMfMNPKHKETEDYISGK 250
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
6-219 |
4.58e-30 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 113.36 E-value: 4.58e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSF---ILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT----- 77
Cdd:TIGR02769 2 LLEVRDVTHTYrtgGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYqldrk 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 78 ---APNRRMSMVFQNF--ALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKG-LKNAYPYELSGGMKQRVGF 151
Cdd:TIGR02769 82 qrrAFRRDVQLVFQDSpsAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSeDADKLPRQLSGGQLQRINI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 152 ARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYVLGG 219
Cdd:TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL--QQAFGT-AYLFITHDLRLVQSFCQRVAVMDK 226
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-217 |
4.84e-30 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 117.48 E-value: 4.84e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFILSK---QRQSELI--LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIrPSYGAITFDGNLVTA 78
Cdd:COG4172 273 PPLLEARDLKVWFPIKRglfRRTVGHVkaVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 79 PN--------RRMSMVFQN-FA-LFPWLTVRQNIMFGLES-QLNSDCQYVDNQIDNLINLIGLK-GLKNAYPYELSGGMK 146
Cdd:COG4172 352 LSrralrplrRRMQVVFQDpFGsLSPRMTVGQIIAEGLRVhGPGLSAAERRARVAEALEEVGLDpAARHRYPHEFSGGQR 431
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 147 QRVGFARALAVEPELLLLDEPFSALDVlTGQR----LGQDLitlweRRKFKMqAIVLITHNISeAVR-LSDVIYVL 217
Cdd:COG4172 432 QRIAIARALILEPKLLVLDEPTSALDV-SVQAqildLLRDL-----QREHGL-AYLFISHDLA-VVRaLAHRVMVM 499
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
23-223 |
6.48e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 117.55 E-value: 6.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 23 QSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQNFALFPWlT 97
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDpaswrRQIAWVPQNPYLFAG-T 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 VRQNIMFGlesQLNSDcqyvDNQIDNLINLIGLKGLKNAYP--YE---------LSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:COG4988 427 IRENLRLG---RPDAS----DEELEAALEAAGLDEFVAALPdgLDtplgeggrgLSGGQAQRLALARALLRDAPLLLLDE 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 167 PFSALDVLTGQRLGQDLITLWERRkfkmqAIVLITHNISeAVRLSDVIYVL-GGKPAQ 223
Cdd:COG4988 500 PTAHLDAETEAEILQALRRLAKGR-----TVILITHRLA-LLAQADRILVLdDGRIVE 551
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
28-212 |
6.80e-30 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 110.79 E-value: 6.80e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITfdgnlvTAPNRRMSMVFQNFAL---FPwLTVRQNIMF 104
Cdd:NF040873 8 LHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVR------RAGGARVAYVPQRSEVpdsLP-LTVRDLVAM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 105 GLESQLN-------SDCQYVDNQIDNLinliGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQ 177
Cdd:NF040873 81 GRWARRGlwrrltrDDRAAVDDALERV----GLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRE 156
|
170 180 190
....*....|....*....|....*....|....*
gi 922315154 178 RLgQDLITLWERRKfkmQAIVLITHNIsEAVRLSD 212
Cdd:NF040873 157 RI-IALLAEEHARG---ATVVVVTHDL-ELVRRAD 186
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
28-203 |
7.39e-30 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 111.35 E-value: 7.39e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG--------NLVTAPNRRMSMVFQNFALFPWLTVR 99
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGqdvsdlrgRAIPYLRRKIGVVFQDFRLLPDRNVY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 100 QNIMFGLESQLNSDcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRl 179
Cdd:cd03292 97 ENVAFALEVTGVPP-REIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE- 174
|
170 180
....*....|....*....|....
gi 922315154 180 gqdLITLWERRKFKMQAIVLITHN 203
Cdd:cd03292 175 ---IMNLLKKINKAGTTVVVATHA 195
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
6-205 |
3.82e-29 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 110.93 E-value: 3.82e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFI---LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR 82
Cdd:PRK10419 3 LLNVSGLSHHYAhggLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 --------MSMVFQNF--ALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLK-GLKNAYPYELSGGMKQRVGF 151
Cdd:PRK10419 83 qrkafrrdIQMVFQDSisAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDdSVLDKRPPQLSGGQLQRVCL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 152 ARALAVEPELLLLDEPFSALDVLtgqrLGQDLITLWE--RRKFKMqAIVLITHNIS 205
Cdd:PRK10419 163 ARALAVEPKLLILDEAVSNLDLV----LQAGVIRLLKklQQQFGT-ACLFITHDLR 213
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
28-226 |
6.52e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 110.91 E-value: 6.52e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-------RRMSMVFQ--NFALFPWlTV 98
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKvklsdirKKVGLVFQypEYQLFEE-TI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNIMFGLeSQLNSDCQYVDNQIDNLINLIGLK--GLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTG 176
Cdd:PRK13637 102 EKDIAFGP-INLGLSEEEIENRVKRAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 177 QRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYV-------LGGKPAQIMN 226
Cdd:PRK13637 181 DEILNKIKEL--HKEYNM-TIILVSHSMEDVAKLADRIIVmnkgkceLQGTPREVFK 234
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
6-217 |
8.00e-29 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 109.93 E-value: 8.00e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSK---QRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-- 80
Cdd:COG4167 4 LLEVRNLSKTFKYRTglfRRQQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEYGDyk 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQ--NFALFPWLTVRQNIMFGLesQLNSDcqYVDNQIDNLINLI-GLKGL----KNAYPYELSGGMKQRVG 150
Cdd:COG4167 84 yrcKHIRMIFQdpNTSLNPRLNIGQILEEPL--RLNTD--LTAEEREERIFATlRLVGLlpehANFYPHMLSSGQKQRVA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 151 FARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG4167 160 LARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGI---SYIYVSQHLGIVKHISDKVLVM 223
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-217 |
9.56e-29 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 114.01 E-value: 9.56e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAVLLDVDHVSKSFILSKQRQseLILEAVSLQVQTHQFISIIGSSGVGKS----TLLRMIAGIIRPSYGAITFDG-NL 75
Cdd:COG4172 1 MMSMPLLSVEDLSVAFGQGGGTV--EAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGqDL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 76 VTAPNRRM--------SMVFQN--FALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLK---NAYPYELS 142
Cdd:COG4172 79 LGLSERELrrirgnriAMIFQEpmTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPErrlDAYPHQLS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 143 GGMKQRVGFARALAVEPELLLLDEPFSALDVlTGQR----LGQDLitlweRRKFKMqAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG4172 159 GGQRQRVMIAMALANEPDLLIADEPTTALDV-TVQAqildLLKDL-----QRELGM-ALLLITHDLGVVRRFADRVAVM 230
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
7-217 |
1.45e-28 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 107.75 E-value: 1.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT-APNRRMSM 85
Cdd:cd03269 1 LEVENVTKRF------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDiAARNRIGY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFPWLTVRQNIMFgLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLD 165
Cdd:cd03269 75 LPEERGLYPKMKVIDQLVY-LAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 922315154 166 EPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03269 154 EPFSGLDPVNVELLKDVIRELARAGK----TVILSTHQMELVEELCDRVLLL 201
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
18-227 |
1.63e-28 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 109.09 E-value: 1.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APN---RRMSMVFQNFAL 92
Cdd:PRK13548 8 LSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdwSPAelaRRRAVLPQHSSL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 93 -FPWlTVRQNIMFGLeSQLNSDCQYVDNQIDNLINLIGLKGLKN-AYPyELSGGMKQRVGFARALA------VEPELLLL 164
Cdd:PRK13548 88 sFPF-TVEEVVAMGR-APHGLSRAEDDALVAAALAQVDLAHLAGrDYP-QLSGGEQQRVQLARVLAqlwepdGPPRWLLL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922315154 165 DEPFSALDvltgqrLGQDLITLWERRKFKMQ---AIVLITHNISEAVRLSDVIYVL-------GGKPAQIMNT 227
Cdd:PRK13548 165 DEPTSALD------LAHQHHVLRLARQLAHErglAVIVVLHDLNLAARYADRIVLLhqgrlvaDGTPAEVLTP 231
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
3-230 |
1.66e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 109.31 E-value: 1.66e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 3 KAVLLDVDHVSKSFILSKQrqseLILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-- 80
Cdd:PRK13632 4 KSVMIKVENVSFSYPNSEN----NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENlk 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQN-FALFPWLTVRQNIMFGLESQlNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALA 156
Cdd:PRK13632 80 eirKKIGIIFQNpDNQFIGATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 157 VEPELLLLDEPFSALDVLTGQRLGQDLITLwerRKFKMQAIVLITHNISEAVrLSDVIYVLG-------GKPAQIMNTYQ 229
Cdd:PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDL---RKTRKKTLISITHDMDEAI-LADKVIVFSegkliaqGKPKEILNNKE 234
|
.
gi 922315154 230 I 230
Cdd:PRK13632 235 I 235
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
24-217 |
4.19e-28 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 112.18 E-value: 4.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 24 SELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN----RRMSMVFQNFALFPwLTV 98
Cdd:COG1132 352 DRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGvDIRDLTLeslrRQIGVVPQDTFLFS-GTI 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNIMFGLESQLNSDCQ------YVDNQIDNLIN----LIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:COG1132 431 RENIRYGRPDATDEEVEeaakaaQAHEFIEALPDgydtVVGERGVN------LSGGQRQRIAIARALLKDPPILILDEAT 504
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 922315154 169 SALDVLTGQRLGQDLITLWERRkfkmqAIVLITHNISeAVRLSDVIYVL 217
Cdd:COG1132 505 SALDTETEALIQEALERLMKGR-----TTIVIAHRLS-TIRNADRILVL 547
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
7-219 |
8.50e-28 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 105.76 E-value: 8.50e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilsKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT---APNRRM 83
Cdd:cd03268 1 LKTNDLTKTY---GKKR---VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQkniEALRRI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SMVFQNFALFPWLTVRQNI-MFGLESQLNsdcqyvDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELL 162
Cdd:cd03268 75 GALIEAPGFYPNLTARENLrLLARLLGIR------KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLL 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 163 LLDEPFSALDVLtGQRLGQDLItlweRRKFKMQAIVLI-THNISEAVRLSDVIYVLGG 219
Cdd:cd03268 149 ILDEPTNGLDPD-GIKELRELI----LSLRDQGITVLIsSHLLSEIQKVADRIGIINK 201
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
18-227 |
9.57e-28 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 106.71 E-value: 9.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN----RRMSMVFQNFAL 92
Cdd:COG4604 7 VSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGlDVATTPSrelaKRLAILRQENHI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 93 FPWLTVRQNIMFGL--ESQ--LNSDCQYVdnqIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:COG4604 87 NSRLTVRELVAFGRfpYSKgrLTAEDREI---IDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 169 SALDVLTGQRLGQDLITLW-ERRKfkmqAIVLITHNISEAVRLSDVIYVL--G-----GKPAQIMNT 227
Cdd:COG4604 164 NNLDMKHSVQMMKLLRRLAdELGK----TVVIVLHDINFASCYADHIVAMkdGrvvaqGTPEEIITP 226
|
|
| ectoine_ehuA |
TIGR03005 |
ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Members of this family are the ... |
27-244 |
2.01e-27 |
|
ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Pssm-ID: 132050 [Multi-domain] Cd Length: 252 Bit Score: 106.07 E-value: 2.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFD-----------GNLVTAPNR-------RMSMVFQ 88
Cdd:TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEgeqlyhmpgrnGPLVPADEKhlrqmrnKIGMVFQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 89 NFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:TIGR03005 95 SFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 169 SALDvltGQRLGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVI-------YVLGGKPAQIMntyqiKTPRNQRTEQQ 241
Cdd:TIGR03005 175 SALD---PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVcffdkgrIVEQGKPDEIF-----RQPKEERTREF 246
|
...
gi 922315154 242 IRA 244
Cdd:TIGR03005 247 LSK 249
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
18-227 |
2.76e-27 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 105.58 E-value: 2.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPNRRMSM---VF-QNFAL 92
Cdd:COG4559 7 LSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGrPLAAWSPWELARrraVLpQHSSL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 93 -FPWlTVRQNIMFGLESQLNSDCQyvDNQI-DNLINLIGLKGLKN-AYPyELSGGMKQRVGFARALA-------VEPELL 162
Cdd:COG4559 87 aFPF-TVEEVVALGRAPHGSSAAQ--DRQIvREALALVGLAHLAGrSYQ-TLSGGEQQRVQLARVLAqlwepvdGGPRWL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 163 LLDEPFSALDvltgqrLGQDLITLWERRKFKMQ--AIVLITHNISEAVRLSDVIYVL--G-----GKPAQIMNT 227
Cdd:COG4559 163 FLDEPTSALD------LAHQHAVLRLARQLARRggGVVAVLHDLNLAAQYADRILLLhqGrlvaqGTPEEVLTD 230
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-220 |
3.57e-27 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 109.35 E-value: 3.57e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFilskqrqSELI-LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR 82
Cdd:COG3845 3 PPALELRGITKRF-------GGVVaNDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MS------MVFQNFALFPWLTVRQNIMFGLES--QLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARA 154
Cdd:COG3845 76 DAialgigMVHQHFMLVPNLTVAENIVLGLEPtkGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922315154 155 LAVEPELLLLDEPFSaldVLTGQ---RLGQDLitlwerRKFKMQ--AIVLITHNISEAVRLSDVIYVL-GGK 220
Cdd:COG3845 156 LYRGARILILDEPTA---VLTPQeadELFEIL------RRLAAEgkSIIFITHKLREVMAIADRVTVLrRGK 218
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
8-220 |
3.67e-27 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 103.88 E-value: 3.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 8 DVDHVSKSFilskqRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR--MSM 85
Cdd:cd03226 1 RIENISFSY-----KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRksIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQN--FALFPwLTVRQNIMFGLEsqlnsDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:cd03226 76 VMQDvdYQLFT-DSVREELLLGLK-----ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 164 LDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSD-VIYVLGGK 220
Cdd:cd03226 150 FDEPTSGLDYKNMERVGELIRELAAQGK----AVIVITHDYEFLAKVCDrVLLLANGA 203
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
22-217 |
9.60e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 104.88 E-value: 9.60e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 22 RQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR-----MSMVFQN-----FA 91
Cdd:PRK13652 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIRevrkfVGLVFQNpddqiFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 92 LfpwlTVRQNIMFGlESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:PRK13652 94 P----TVEQDIAFG-PINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 922315154 172 DVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK13652 169 DPQGVKELIDFLNDLPETYGM---TVIFSTHQLDLVPEMADYIYVM 211
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
7-217 |
1.18e-26 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 101.35 E-value: 1.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR---- 82
Cdd:cd03216 1 LELRGITKRF------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRdarr 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 --MSMVFQnfalfpwltvrqnimfglesqlnsdcqyvdnqidnlinliglkglknaypyeLSGGMKQRVGFARALAVEPE 160
Cdd:cd03216 75 agIAMVYQ----------------------------------------------------LSVGERQMVEIARALARNAR 102
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 161 LLLLDEPFSALDVLTGQRLGqDLItlwerRKFKMQ--AIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03216 103 LLILDEPTAALTPAEVERLF-KVI-----RRLRAQgvAVIFISHRLDEVFEIADRVTVL 155
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
28-217 |
1.90e-26 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 104.39 E-value: 1.90e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN---RRMSMVFQNFALFPWLTVRQNIM 103
Cdd:TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGyDVVREPRkvrRSIGIVPQYASVDEDLTGRENLE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 104 -----FGLESQLnsdcqyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQR 178
Cdd:TIGR01188 89 mmgrlYGLPKDE------AEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 922315154 179 LgQDLItlwerRKFKMQ--AIVLITHNISEAVRLSDVIYVL 217
Cdd:TIGR01188 163 I-WDYI-----RALKEEgvTILLTTHYMEEADKLCDRIAII 197
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
31-217 |
2.25e-26 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 102.45 E-value: 2.25e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPN---RRMSMVFQNFALFPWLTVRQNI---- 102
Cdd:cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGhDVVREPRevrRRIGIVFQDLSVDDELTGWENLyiha 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 103 -MFGLESQLnsdcqyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTgqRLGq 181
Cdd:cd03265 99 rLYGVPGAE------RRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT--RAH- 169
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 922315154 182 dlitLWERRKfKMQA-----IVLITHNISEAVRLSDVIYVL 217
Cdd:cd03265 170 ----VWEYIE-KLKEefgmtILLTTHYMEEAEQLCDRVAII 205
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-217 |
2.93e-26 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 104.91 E-value: 2.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 2 KKAVLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR 81
Cdd:PRK13536 37 MSTVAIDLAGVSKSY------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 ----RMSMVFQNFALFPWLTVRQNIM-FGLESQLNSdcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALA 156
Cdd:PRK13536 111 laraRIGVVPQFDNLDLEFTVRENLLvFGRYFGMST--REIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 157 VEPELLLLDEPFSALDvltgqRLGQDLItlWERRK---FKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK13536 189 NDPQLLILDEPTTGLD-----PHARHLI--WERLRsllARGKTILLTTHFMEEAERLCDRLCVL 245
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-217 |
3.28e-26 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 106.64 E-value: 3.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFILSKqrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR- 82
Cdd:COG1129 2 EPLLEMRGISKSFGGVK------ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRd 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 -----MSMVFQNFALFPWLTVRQNIMFGLE---------SQLNSDCQyvdnqidNLINLIGLK-------GlknaypyEL 141
Cdd:COG1129 76 aqaagIAIIHQELNLVPNLSVAENIFLGREprrgglidwRAMRRRAR-------ELLARLGLDidpdtpvG-------DL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 142 SGGMKQRVGFARALAVEPELLLLDEPFSAL---DVltgQRLgQDLItlwerRKFKMQ--AIVLITHNISEAVRLSDVIYV 216
Cdd:COG1129 142 SVAQQQLVEIARALSRDARVLILDEPTASLterEV---ERL-FRII-----RRLKAQgvAIIYISHRLDEVFEIADRVTV 212
|
.
gi 922315154 217 L 217
Cdd:COG1129 213 L 213
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
6-209 |
5.13e-26 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 101.78 E-value: 5.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQRQSelILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN----- 80
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHELS--ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDeeara 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ----RRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDnLINLIGLKGLKNAYPYELSGGMKQRVGFARALA 156
Cdd:PRK10584 84 klraKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKA-LLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 922315154 157 VEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKmQAIVLITHNISEAVR 209
Cdd:PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSL--NREHG-TTLILVTHDLQLAAR 212
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
7-214 |
5.59e-26 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 101.32 E-value: 5.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-RRMSM 85
Cdd:TIGR03740 1 LETKNLSKRF------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDlHKIGS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFPWLTVRQNI-----MFGLEsqlnsdcqyvDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPE 160
Cdd:TIGR03740 75 LIESPPLYENLTARENLkvhttLLGLP----------DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 161 LLLLDEPFSALDVLTGQRLgQDLItlwerRKFKMQAIVLI--THNISEAVRLSDVI 214
Cdd:TIGR03740 145 LLILDEPTNGLDPIGIQEL-RELI-----RSFPEQGITVIlsSHILSEVQQLADHI 194
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
7-172 |
6.91e-26 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 100.73 E-value: 6.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilSKQRQseliLEAVSLQVQThQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN----RR 82
Cdd:cd03264 1 LQLENLTKRY--GKKRA----LDGVSLTLGP-GMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPqklrRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQNFALFPWLTVR-----QNIMFGLESQlnsdcqYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:cd03264 74 IGYLPQEFGVYPNFTVRefldyIAWLKGIPSK------EVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG 147
|
170
....*....|....*
gi 922315154 158 EPELLLLDEPFSALD 172
Cdd:cd03264 148 DPSILIVDEPTAGLD 162
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
27-226 |
8.74e-26 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 101.15 E-value: 8.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG---NLVTAPN--RRMSMVFQNFALFPwLTVRQN 101
Cdd:cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGqdiREVTLDSlrRAIGVVPQDTVLFN-DTIGYN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFGLESQlnSDCQYVD----NQIDNLIN--------LIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:cd03253 95 IRYGRPDA--TDEEVIEaakaAQIHDKIMrfpdgydtIVGERGLK------LSGGEKQRVAIARAILKNPPILLLDEATS 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 170 ALDVLTGQRLGQDLITLWERRkfkmqAIVLITHNISEAVRlSDVIYVLG-------GKPAQIMN 226
Cdd:cd03253 167 ALDTHTEREIQAALRDVSKGR-----TTIVIAHRLSTIVN-ADKIIVLKdgriverGTHEELLA 224
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
7-217 |
1.11e-25 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 100.68 E-value: 1.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFILSKQRQSEL----------------ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAIT 70
Cdd:cd03220 1 IELENVSKSYPTYKGGSSSLkklgilgrkgevgefwALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 71 FDGNLVtapnrrmSMVFQNFALFPWLTVRQNIMFGLeSQLNSDCQYVDNQIDNLINLIGLKGLKNaYPY-ELSGGMKQRV 149
Cdd:cd03220 81 VRGRVS-------SLLGLGGGFNPELTGRENIYLNG-RLLGLSRKEIDEKIDEIIEFSELGDFID-LPVkTYSSGMKARL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 150 GFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03220 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK----TVILVSHDPSSIKRLCDRALVL 215
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
18-211 |
1.39e-25 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 99.74 E-value: 1.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV----TAPNRRMSMVFQNFALF 93
Cdd:TIGR01189 6 LACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLaeqrDEPHENILYLGHLPGLK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 94 PWLTVRQNIMFglesqLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDV 173
Cdd:TIGR01189 86 PELSALENLHF-----WAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDK 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 922315154 174 ltgqrLGQDLITLWERRKFKMQAIVLI-TH---NISEAVRLS 211
Cdd:TIGR01189 161 -----AGVALLAGLLRAHLARGGIVLLtTHqdlGLVEARELR 197
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-228 |
1.50e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 102.11 E-value: 1.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRmsmv 86
Cdd:COG4152 2 LELKGLTKRF------GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRR---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 87 fqNFA-------LFPWLTVRQNIMF-----GLESqlnsdcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARA 154
Cdd:COG4152 72 --RIGylpeergLYPKMKVGEQLVYlarlkGLSK------AEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 155 LAVEPELLLLDEPFSALDVLtGQRLGQDLITlwERRKfKMQAIVLITHNISEAVRLSDVIY-------VLGGKPAQIMNT 227
Cdd:COG4152 144 LLHDPELLILDEPFSGLDPV-NVELLKDVIR--ELAA-KGTTVIFSSHQMELVEELCDRIViinkgrkVLSGSVDEIRRQ 219
|
.
gi 922315154 228 Y 228
Cdd:COG4152 220 F 220
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
24-217 |
1.54e-25 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 98.83 E-value: 1.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 24 SELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APN---RRMSMVFQNFALFPWlTV 98
Cdd:cd03246 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISqwDPNelgDHVGYLPQDDELFSG-SI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNImfglesqlnsdcqyvdnqidnlinliglkglknaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQR 178
Cdd:cd03246 93 AENI--------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134
|
170 180 190
....*....|....*....|....*....|....*....
gi 922315154 179 LGQDLITLwerrKFKMQAIVLITHNIsEAVRLSDVIYVL 217
Cdd:cd03246 135 LNQAIAAL----KAAGATRIVIAHRP-ETLASADRILVL 168
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
7-223 |
3.12e-25 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 101.42 E-value: 3.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVtaPNR----- 81
Cdd:PRK13537 8 IDFRNVEKRY------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV--PSRarhar 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 -RMSMVFQNFALFPWLTVRQNIM-----FGLESQlnsdcqYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARAL 155
Cdd:PRK13537 80 qRVGVVPQFDNLDPDFTVRENLLvfgryFGLSAA------AARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922315154 156 AVEPELLLLDEPFSALDvltgqrlGQDLITLWERRKFKM---QAIVLITHNISEAVRLSDVIYVL--GGKPAQ 223
Cdd:PRK13537 154 VNDPDVLVLDEPTTGLD-------PQARHLMWERLRSLLargKTILLTTHFMEEAERLCDRLCVIeeGRKIAE 219
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
28-217 |
4.67e-25 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 98.82 E-value: 4.67e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQNFALFpWLTVRQNI 102
Cdd:cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDpadlrRNIGYVPQDVTLF-YGTLRDNI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 103 MFGlesqlnsdCQYVDNQ-IDNLINLIGLKGLKNAYP-----------YELSGGMKQRVGFARALAVEPELLLLDEPFSA 170
Cdd:cd03245 99 TLG--------APLADDErILRAAELAGVTDFVNKHPngldlqigergRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 922315154 171 LDVLTGQRLGQDLitlweRRKFKMQAIVLITHNISeAVRLSDVIYVL 217
Cdd:cd03245 171 MDMNSEERLKERL-----RQLLGDKTLIIITHRPS-LLDLVDRIIVM 211
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
27-217 |
6.48e-25 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 98.90 E-value: 6.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APNRR----MSMVFQNFALFPWLTVRQ 100
Cdd:COG0410 18 VLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITglPPHRIarlgIGYVPEGRRIFPSLTVEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 101 NIMFGLesQLNSDCQYVDNQIDNLINL--IgLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQR 178
Cdd:COG0410 98 NLLLGA--YARRDRAEVRADLERVYELfpR-LKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEE 174
|
170 180 190
....*....|....*....|....*....|....*....
gi 922315154 179 LGQDLITLwerRKFKMqAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG0410 175 IFEIIRRL---NREGV-TILLVEQNARFALEIADRAYVL 209
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
18-203 |
1.13e-24 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 97.64 E-value: 1.13e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMVF---QNfALFP 94
Cdd:PRK13539 8 LACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYlghRN-AMKP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 95 WLTVRQNIMFGLESQLNSDCqyvdnQIDNLINLIGLKGLKNAyPY-ELSGGMKQRVGFARALAVEPELLLLDEPFSALDV 173
Cdd:PRK13539 87 ALTVAENLEFWAAFLGGEEL-----DIAAALEAVGLAPLAHL-PFgYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
170 180 190
....*....|....*....|....*....|
gi 922315154 174 lTGQRLGQDLItlwERRKFKMQAIVLITHN 203
Cdd:PRK13539 161 -AAVALFAELI---RAHLAQGGIVIAATHI 186
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
2-217 |
1.25e-24 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 100.17 E-value: 1.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 2 KKAVLLDVDHVSKSF-ILSKQR---QSELILEAV---SLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGN 74
Cdd:PRK15079 4 GKKVLLEVADLKVHFdIKDGKQwfwQPPKTLKAVdgvTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 75 LVT--------APNRRMSMVFQN--FALFPWLTVRQNIMFGLES-QLNSDCQYVDNQIDNLINLIGL-KGLKNAYPYELS 142
Cdd:PRK15079 84 DLLgmkddewrAVRSDIQMIFQDplASLNPRMTIGEIIAEPLRTyHPKLSRQEVKDRVKAMMLKVGLlPNLINRYPHEFS 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 143 GGMKQRVGFARALAVEPELLLLDEPFSALDV-LTGQrlgqdLITLWERRKFKMQ-AIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVsIQAQ-----VVNLLQQLQREMGlSLIFIAHDLAVVKHISDRVLVM 235
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-242 |
2.35e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 98.20 E-value: 2.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 8 DVDHVSKSFILSKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV----------- 76
Cdd:PRK14246 9 DVFNISRLYLYINDKA---ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLyfgkdifqida 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 77 TAPNRRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGL----KGLKNAYPYELSGGMKQRVGFA 152
Cdd:PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 153 RALAVEPELLLLDEPFSALDVLTGQRLgQDLITLWErrkfKMQAIVLITHNISEAVRLSD-VIYVLGGKPAQIMNTYQIK 231
Cdd:PRK14246 166 RALALKPKVLLMDEPTSMIDIVNSQAI-EKLITELK----NEIAIVIVSHNPQQVARVADyVAFLYNGELVEWGSSNEIF 240
|
250
....*....|..
gi 922315154 232 T-PRNQRTEQQI 242
Cdd:PRK14246 241 TsPKNELTEKYV 252
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
43-220 |
3.27e-24 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 97.39 E-value: 3.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 43 IIGSSGVGKSTLLRMIAGIIRPSYGAITFDGN---LVTAPN--------RRMSMVFQNFALFPWLTVRQNIMFGLESQLN 111
Cdd:PRK11124 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfdFSKTPSdkairelrRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 112 SDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDV-LTGQ------RLGQDLI 184
Cdd:PRK11124 113 LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPeITAQivsiirELAETGI 192
|
170 180 190
....*....|....*....|....*....|....*..
gi 922315154 185 TlwerrkfkmQAIVliTHNISEAVRL-SDVIYVLGGK 220
Cdd:PRK11124 193 T---------QVIV--THEVEVARKTaSRVVYMENGH 218
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-229 |
3.99e-24 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 97.07 E-value: 3.99e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAVllDVDHVSKSFILSKQRQSEL----------------ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRP 64
Cdd:COG1134 1 MSSMI--EVENVSKSYRLYHEPSRSLkelllrrrrtrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 65 SYGAITFDGNlVTAPnrrmsmvfqnFAL---F-PWLTVRQNIMF-----GLESQlnsdcqyvdnQIDNLINLI----GLK 131
Cdd:COG1134 79 TSGRVEVNGR-VSAL----------LELgagFhPELTGRENIYLngrllGLSRK----------EIDEKFDEIvefaELG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 132 G-----LKNaYpyelSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISE 206
Cdd:COG1134 138 DfidqpVKT-Y----SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGR----TVIFVSHSMGA 208
|
250 260 270
....*....|....*....|....*....|
gi 922315154 207 AVRLSDVIYVL--G-----GKPAQIMNTYQ 229
Cdd:COG1134 209 VRRLCDRAIWLekGrlvmdGDPEEVIAAYE 238
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
23-203 |
5.66e-24 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 100.51 E-value: 5.66e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 23 QSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQNFALFPwLT 97
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDqdevrRRVSVCAQDAHLFD-TT 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 VRQNIMFG------------LES-QLNSdcqYVDNQIDNLINLIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLL 164
Cdd:TIGR02868 425 VRENLRLArpdatdeelwaaLERvGLAD---WLRALPDGLDTVLGEGGAR------LSGGERQRLALARALLADAPILLL 495
|
170 180 190
....*....|....*....|....*....|....*....
gi 922315154 165 DEPFSALDVLTGQRLGQDLITLWERRkfkmqAIVLITHN 203
Cdd:TIGR02868 496 DEPTEHLDAETADELLEDLLAALSGR-----TVVLITHH 529
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
24-212 |
6.07e-24 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 97.16 E-value: 6.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 24 SELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGI--IRPSY---GAITFDGNLVTAPN-------RRMSMVFQNFA 91
Cdd:PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndLIPGFrveGKVTFHGKNLYAPDvdpvevrRRIGMVFQKPN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 92 LFPwLTVRQNIMFGleSQLNSdcqYVDNqIDNLINliglKGLKNAYPYE------------LSGGMKQRVGFARALAVEP 159
Cdd:PRK14243 102 PFP-KSIYDNIAYG--ARING---YKGD-MDELVE----RSLRQAALWDevkdklkqsglsLSGGQQQRLCIARAIAVQP 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 922315154 160 ELLLLDEPFSALDVLTGQRLGQDLITLWERrkfkmQAIVLITHNISEAVRLSD 212
Cdd:PRK14243 171 EVILMDEPCSALDPISTLRIEELMHELKEQ-----YTIIIVTHNMQQAARVSD 218
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
18-202 |
6.68e-24 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 100.14 E-value: 6.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLvtapnrRMSMVFQNFALFPWLT 97
Cdd:COG0488 4 LSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGL------RIGYLPQEPPLDDDLT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 VRQNIMFGLE------------SQLNSDCQYVDNQIDNLIN-----------------LIGLkGLKNAYPY----ELSGG 144
Cdd:COG0488 78 VLDTVLDGDAelraleaeleelEAKLAEPDEDLERLAELQEefealggweaearaeeiLSGL-GFPEEDLDrpvsELSGG 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 145 MKQRVGFARALAVEPELLLLDEPFSALDVLTgqrlgqdliTLW-ER--RKFKMqAIVLITH 202
Cdd:COG0488 157 WRRRVALARALLSEPDLLLLDEPTNHLDLES---------IEWlEEflKNYPG-TVLVVSH 207
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
28-217 |
6.93e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 97.21 E-value: 6.93e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN---------RRMSMVFQnfalFPWL-- 96
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETgnknlkklrKKVSLVFQ----FPEAql 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 ---TVRQNIMFGLESQLNSDcQYVDNQIDNLINLIGLK-GLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PRK13641 99 fenTVLKDVEFGPKNFGFSE-DEAKEKALKWLKKVGLSeDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 922315154 173 vltgQRLGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK13641 178 ----PEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL 218
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
18-245 |
8.14e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 96.64 E-value: 8.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLL----RM--IAGIIRPSYGAITFDGNL------VTAPNRRMSM 85
Cdd:PRK14258 13 LSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLkclnRMneLESEVRVEGRVEFFNQNIyerrvnLNRLRRQVSM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFPwLTVRQNIMFGLE-----SQLNSDcQYVDNQID--NLINLIGLKGLKNAYpyELSGGMKQRVGFARALAVE 158
Cdd:PRK14258 93 VHPKPNLFP-MSVYDNVAYGVKivgwrPKLEID-DIVESALKdaDLWDEIKHKIHKSAL--DLSGGQQQRLCIARALAVK 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 159 PELLLLDEPFSALDVLTGQRLGQDLITLWERRKFKMqaiVLITHNISEAVRLSDVIYVLGGKPAQIMNTYQIKT------ 232
Cdd:PRK14258 169 PKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTM---VIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLtkkifn 245
|
250
....*....|....
gi 922315154 233 -PRNQRTEQQIRAK 245
Cdd:PRK14258 246 sPHDSRTREYVLSR 259
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
6-209 |
1.06e-23 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 95.58 E-value: 1.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQRQSEL-ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-----NLVTAP 79
Cdd:COG4778 4 LLEVENLSKTFTLHLQGGKRLpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHdggwvDLAQAS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 80 NRRMsmvfqnfalfpwLTVRQNIMfGLESQ--------------------LNSDCQYVDNQIDNLINLIGLK-GLKNAYP 138
Cdd:COG4778 84 PREI------------LALRRRTI-GYVSQflrviprvsaldvvaeplleRGVDREEARARARELLARLNLPeRLWDLPP 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 139 YELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLgQDLItlwERRKFKMQAIVLITHNisEAVR 209
Cdd:COG4778 151 ATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVV-VELI---EEAKARGTAIIGIFHD--EEVR 215
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
20-201 |
1.11e-23 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 95.42 E-value: 1.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 20 KQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPS---YGAITFDGNLVTAP--NRRMSMVFQNFALFP 94
Cdd:cd03234 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGgttSGQILFNGQPRKPDqfQKCVAYVRQDDILLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 95 WLTVRQNIMFGLESQL---NSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:cd03234 95 GLTVRETLTYTAILRLprkSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180 190
....*....|....*....|....*....|
gi 922315154 172 DVLTGQRLGQDLITLWERRKfkmqaIVLIT 201
Cdd:cd03234 175 DSFTALNLVSTLSQLARRNR-----IVILT 199
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
7-220 |
2.77e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 95.64 E-value: 2.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFILSKqrqsELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRP---SYGAITFDGNLVTAPN--- 80
Cdd:PRK13640 6 VEFKHVSFTYPDSK----KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnPNSKITVDGITLTAKTvwd 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 --RRMSMVFQN-FALFPWLTVRQNIMFGLESQLNSDCQYVdNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:PRK13640 82 irEKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMI-KIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922315154 158 EPELLLLDEPFSALDVlTGQRLGQDLITlwERRKFKMQAIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:PRK13640 161 EPKIIILDESTSMLDP-AGKEQILKLIR--KLKKKNNLTVISITHDIDEANMADQVLVLDDGK 220
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
10-204 |
3.21e-23 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 94.17 E-value: 3.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 10 DHVSKSFILSKQrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT------AP--NR 81
Cdd:PRK10908 5 EHVSKAYLGGRQ-----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITrlknreVPflRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPWLTVRQNIMFGLESQLNSDcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPEL 161
Cdd:PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASG-DDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 162 LLLDEPFSALDvltgQRLGQDLITLWERRKFKMQAIVLITHNI 204
Cdd:PRK10908 159 LLADEPTGNLD----DALSEGILRLFEEFNRVGVTVLMATHDI 197
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
28-235 |
3.28e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 95.14 E-value: 3.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR-------RMSMVFQN-----FAlfPw 95
Cdd:PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKsllevrkTVGIVFQNpddqlFA--P- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 96 lTVRQNIMFG-LESQLNSDcqYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVL 174
Cdd:PRK13639 95 -TVEEDVAFGpLNLGLSKE--EVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 175 TGQRLGQdliTLWERRKFKMqAIVLITHNISEAVRLSDVIYVL-------GGKPAQIMNtyQIKTPRN 235
Cdd:PRK13639 172 GASQIMK---LLYDLNKEGI-TIIISTHDVDLVPVYADKVYVMsdgkiikEGTPKEVFS--DIETIRK 233
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
24-242 |
3.48e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 94.91 E-value: 3.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 24 SELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPS-----YGAITFDGNLVTAPN-------RRMSMVFQNFA 91
Cdd:PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIYSPDvdpievrREVGMVFQYPN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 92 LFPWLTVRQNIMFGLE-SQLNSDCQYVDNQIDNLINLIGL----KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:PRK14267 96 PFPHLTIYDNVAIGVKlNGLVKSKKELDERVEWALKKAALwdevKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 167 PFSALDVLTGQRLGQDLITLWERrkfkmQAIVLITHNISEAVRLSD-VIYVLGGKPAQIMNTYQI-KTPRNQRTEQQI 242
Cdd:PRK14267 176 PTANIDPVGTAKIEELLFELKKE-----YTIVLVTHSPAQAARVSDyVAFLYLGKLIEVGPTRKVfENPEHELTEKYV 248
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-212 |
3.71e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 94.77 E-value: 3.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSF----ILSKQrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APN 80
Cdd:COG1101 2 LELKNLSKTFnpgtVNEKR-----ALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTklPEY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 RR---MSMVFQNFAL--FPWLTVRQNIM--------FGLESQLNSDCQyvdNQIDNLINLIGLkGLKNAYPYE---LSGG 144
Cdd:COG1101 77 KRakyIGRVFQDPMMgtAPSMTIEENLAlayrrgkrRGLRRGLTKKRR---ELFRELLATLGL-GLENRLDTKvglLSGG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 145 MKQRVGFARALAVEPELLLLDEPFSALDVLTGQRlgqdLITLWER--RKFKMQAIvLITHNISEAVRLSD 212
Cdd:COG1101 153 QRQALSLLMATLTKPKLLLLDEHTAALDPKTAAL----VLELTEKivEENNLTTL-MVTHNMEQALDYGN 217
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
6-206 |
5.09e-23 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 94.00 E-value: 5.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKsfilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGA-ITFDGN---------- 74
Cdd:COG1119 3 LLELRNVTV------RRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdVRLFGErrggedvwel 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 75 -----LVTApnrRMSMVFQnfalfPWLTVRQNIMFGLESQLNSDCQYVDNQI---DNLINLIGLKGLKNAYPYELSGGMK 146
Cdd:COG1119 77 rkrigLVSP---ALQLRFP-----RDETVLDVVLSGFFDSIGLYREPTDEQReraRELLELLGLAHLADRPFGTLSQGEQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 147 QRVGFARALAVEPELLLLDEPFSALDVltGQRlgQDLITLWER-RKFKMQAIVLITHNISE 206
Cdd:COG1119 149 RRVLIARALVKDPELLILDEPTAGLDL--GAR--ELLLALLDKlAAEGAPTLVLVTHHVEE 205
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
31-217 |
5.26e-23 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 93.59 E-value: 5.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRP----SYGAITFDGNLVTAP---NRRMSMVFQN--FALFPWLTVRQN 101
Cdd:TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLPLsirGRHIATIMQNprTAFNPLFTMGNH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFGLESQLNSDCQYVDnQIDNLINLIGL---KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQR 178
Cdd:TIGR02770 85 AIETLRSLGKLSKQARA-LILEALEAVGLpdpEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQAR 163
|
170 180 190
....*....|....*....|....*....|....*....
gi 922315154 179 LgqdLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:TIGR02770 164 V---LKLLRELRQLFGTGILLITHDLGVVARIADEVAVM 199
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
27-219 |
9.12e-23 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 93.37 E-value: 9.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQNFALFPwLTVRQN 101
Cdd:cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNlrwlrSQIGLVSQEPVLFD-GTIAEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFGLESQLNSDCQ------YVDNQIDNLIN----LIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:cd03249 97 IRYGKPDATDEEVEeaakkaNIHDFIMSLPDgydtLVGERGSQ------LSGGQKQRIAIARALLRNPKILLLDEATSAL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 922315154 172 DVLTgQRLGQDliTLWERRKFKMqaIVLITHNISeAVRLSDVIYVLGG 219
Cdd:cd03249 171 DAES-EKLVQE--ALDRAMKGRT--TIVIAHRLS-TIRNADLIAVLQN 212
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
26-226 |
1.01e-22 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 93.52 E-value: 1.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 26 LILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA-PNR---RMSMV--FQNFALFPWLTVR 99
Cdd:PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGlPGHqiaRMGVVrtFQHVRLFREMTVI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 100 QNIMFGLESQLNSdcqyvdNQIDNLINL--------------------IGLKGLKNAYPYELSGGMKQRVGFARALAVEP 159
Cdd:PRK11300 99 ENLLVAQHQQLKT------GLFSGLLKTpafrraesealdraatwlerVGLLEHANRQAGNLAYGQQRRLEIARCMVTQP 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 160 ELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYVLG-------GKPAQIMN 226
Cdd:PRK11300 173 EILMLDEPAAGLNPKETKELDELIAEL--RNEHNV-TVLLIEHDMKLVMGISDRIYVVNqgtplanGTPEEIRN 243
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
27-220 |
1.29e-22 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 92.77 E-value: 1.29e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGN---LVTAPN--------RRMSMVFQNFALFPW 95
Cdd:COG4161 17 ALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfdFSQKPSekairllrQKVGMVFQQYNLWPH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 96 LTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD-VL 174
Cdd:COG4161 97 LTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDpEI 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 922315154 175 TGQ------RLGQDLITlwerrkfkmQAIVliTHNISEAVRL-SDVIYVLGGK 220
Cdd:COG4161 177 TAQvveiirELSQTGIT---------QVIV--THEVEFARKVaSQVVYMEKGR 218
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
18-226 |
1.41e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 93.28 E-value: 1.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSE--LILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR-----MSMVFQNF 90
Cdd:PRK13648 13 VSFQYQSDasFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEklrkhIGIVFQNP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 91 A-LFPWLTVRQNIMFGLESQL--NSDCQYVDNQIdnlINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEP 167
Cdd:PRK13648 93 DnQFVGSIVKYDVAFGLENHAvpYDEMHRRVSEA---LKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 168 FSALDvltgQRLGQDLITLWERRKF-KMQAIVLITHNISEAVRlSDVIYVLG-------GKPAQIMN 226
Cdd:PRK13648 170 TSMLD----PDARQNLLDLVRKVKSeHNITIISITHDLSEAME-ADHVIVMNkgtvykeGTPTEIFD 231
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
6-220 |
1.67e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 93.61 E-value: 1.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-------NLVTA 78
Cdd:PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGldtsdeeNLWDI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 79 PNRrMSMVFQNfalfP-----WLTVRQNIMFGLESqLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFAR 153
Cdd:PRK13633 84 RNK-AGMVFQN----PdnqivATIVEEDVAFGPEN-LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAG 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 154 ALAVEPELLLLDEPFSALDVlTGQRlgQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:PRK13633 158 ILAMRPECIIFDEPTAMLDP-SGRR--EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGK 221
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
14-217 |
2.09e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 93.23 E-value: 2.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 14 KSFILSKQRQSEL-ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVF 87
Cdd:PRK13642 8 ENLVFKYEKESDVnQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENvwnlrRKIGMVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 88 QN-FALFPWLTVRQNIMFGLESQLNSDCQYVdNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:PRK13642 88 QNpDNQFVGATVEDDVAFGMENQGIPREEMI-KRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 922315154 167 PFSALDVlTGQrlgQDLITLWERRKFKMQAIVL-ITHNISEAVRlSDVIYVL 217
Cdd:PRK13642 167 STSMLDP-TGR---QEIMRVIHEIKEKYQLTVLsITHDLDEAAS-SDRILVM 213
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
18-231 |
2.27e-22 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 92.26 E-value: 2.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGN------LVTAPNRRMSMVFQNFA 91
Cdd:PRK10895 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEdisllpLHARARRGIGYLPQEAS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 92 LFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:PRK10895 89 IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGV 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 172 D---VLTGQRLGQDLitlwerRKFKMQaiVLIT-HNISEAVRLSDVIYVLG-------GKPAQIMNTYQIK 231
Cdd:PRK10895 169 DpisVIDIKRIIEHL------RDSGLG--VLITdHNVRETLAVCERAYIVSqghliahGTPTEILQDEHVK 231
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-234 |
2.38e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 93.76 E-value: 2.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAVLLDVDHVSKSFIlSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAI----------T 70
Cdd:PRK13631 16 LSDDIILRVKNLYCVFD-EKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdiyigdkK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 71 FDGNLVTAPN-----------RRMSMVFQ--NFALFPwLTVRQNIMFG---LESQLNSDCQYVDNQIDNLinliglkGLK 134
Cdd:PRK13631 95 NNHELITNPYskkiknfkelrRRVSMVFQfpEYQLFK-DTIEKDIMFGpvaLGVKKSEAKKLAKFYLNKM-------GLD 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 135 NAY----PYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVlTGQRLGQDLItlwERRKFKMQAIVLITHNISEAVRL 210
Cdd:PRK13631 167 DSYlersPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP-KGEHEMMQLI---LDAKANNKTVFVITHTMEHVLEV 242
|
250 260 270
....*....|....*....|....*....|....*..
gi 922315154 211 SDVIYVL-------GGKPAQI------MNTYQIKTPR 234
Cdd:PRK13631 243 ADEVIVMdkgkilkTGTPYEIftdqhiINSTSIQVPR 279
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
18-227 |
3.59e-22 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 94.52 E-value: 3.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV-----TAPNRRMSMVFQNFAL 92
Cdd:PRK09536 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVealsaRAASRRVASVPQDTSL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 93 FPWLTVRQNIMFGLE---SQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:PRK09536 89 SFEFDVRQVVEMGRTphrSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 170 ALDVLTGQRLGQDLITLWERRKFKMQAIvlitHNISEAVRLSDVIYVLG-------GKPAQIMNT 227
Cdd:PRK09536 169 SLDINHQVRTLELVRRLVDDGKTAVAAI----HDLDLAARYCDELVLLAdgrvraaGPPADVLTA 229
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
6-244 |
4.62e-22 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 93.27 E-value: 4.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGII----RPSYGAITFDGNLVTAPN- 80
Cdd:PRK11022 3 LLNVDKLSVHF--GDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIdypgRVMAEKLEFNGQDLQRISe 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 --RR------MSMVFQN--FALFPWLTVRQNIMFGLES-QLNSDCQYVDNQIDnLINLIGL---KGLKNAYPYELSGGMK 146
Cdd:PRK11022 81 keRRnlvgaeVAMIFQDpmTSLNPCYTVGFQIMEAIKVhQGGNKKTRRQRAID-LLNQVGIpdpASRLDVYPHQLSGGMS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 147 QRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHN---ISEAVRLSDVIY----VLGG 219
Cdd:PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL--QQKENM-ALVLITHDlalVAEAAHKIIVMYagqvVETG 236
|
250 260
....*....|....*....|....*
gi 922315154 220 KPAQIMntyqiKTPRNQRTEQQIRA 244
Cdd:PRK11022 237 KAHDIF-----RAPRHPYTQALLRA 256
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
25-217 |
4.70e-22 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 91.14 E-value: 4.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 25 ELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV---TAPN--RRMSMVFQNFALFPWlTVR 99
Cdd:cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVrdyTLASlrRQIGLVSQDVFLFND-TVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 100 QNIMFGLE----------SQLNSDCQYVDNQIDNLINLIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:cd03251 94 ENIAYGRPgatreeveeaARAANAHEFIMELPEGYDTVIGERGVK------LSGGQRQRIAIARALLKDPPILILDEATS 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 922315154 170 ALDVLTgQRLGQD-LITLWERRKfkmqAIVlITHNISeAVRLSDVIYVL 217
Cdd:cd03251 168 ALDTES-ERLVQAaLERLMKNRT----TFV-IAHRLS-TIENADRIVVL 209
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
28-205 |
9.42e-22 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 92.33 E-value: 9.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN--------RRMSMVFQNfalfPW--LT 97
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADpeaqkllrQKIQIVFQN----PYgsLN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 VRQNIMFGLESQL--NSDCQYVDN--QIDNLINLIGLKG-LKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PRK11308 107 PRKKVGQILEEPLliNTSLSAAERreKALAMMAKVGLRPeHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
170 180 190
....*....|....*....|....*....|....*.
gi 922315154 173 V-LTGQRLG--QDLitlweRRKFKMqAIVLITHNIS 205
Cdd:PRK11308 187 VsVQAQVLNlmMDL-----QQELGL-SYVFISHDLS 216
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
31-217 |
1.02e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 91.62 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR---------RMSMVFQnFA---LFPwLTV 98
Cdd:PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKnkklkplrkKVGIVFQ-FPehqLFE-ETV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNIMFGLESQLNSDcQYVDNQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDvltgQ 177
Cdd:PRK13634 104 EKDICFGPMNFGVSE-EDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD----P 178
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 922315154 178 RLGQDLITLWER-RKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK13634 179 KGRKEMMEMFYKlHKEKGLTTVLVTHSMEDAARYADQIVVM 219
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-172 |
1.04e-21 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 94.00 E-value: 1.04e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSF-----ILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKST----LLRMIAgiirpSYGAITFDGN 74
Cdd:PRK15134 273 SPLLDVEQLQVAFpirkgILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQ 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 75 LVTAPNR--------RMSMVFQ--NFALFPWLTVRQNIMFGLE---SQLNSDCQyvDNQIDNLINLIGLK-GLKNAYPYE 140
Cdd:PRK15134 348 PLHNLNRrqllpvrhRIQVVFQdpNSSLNPRLNVLQIIEEGLRvhqPTLSAAQR--EQQVIAVMEEVGLDpETRHRYPAE 425
|
170 180 190
....*....|....*....|....*....|..
gi 922315154 141 LSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
23-217 |
1.11e-21 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 93.66 E-value: 1.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 23 QSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRmsmVF--------QNFALFP 94
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDRE---ELgrhigylpQDVELFD 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 95 WlTVRQNI-MFGlesQLNSD-----CQYVDnqIDNLIN--------LIGLKGLKnaypyeLSGGMKQRVGFARALAVEPE 160
Cdd:COG4618 420 G-TIAENIaRFG---DADPEkvvaaAKLAG--VHEMILrlpdgydtRIGEGGAR------LSGGQRQRIGLARALYGDPR 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 161 LLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISeAVRLSDVIYVL 217
Cdd:COG4618 488 LVVLDEPNSNLDDEGEAALAAAIRALKARGA----TVVVITHRPS-LLAAVDKLLVL 539
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
27-245 |
1.16e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 90.74 E-value: 1.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIR--PS---YGAITFDGNL-----VTAPNRRMSMVFQNFALFPWL 96
Cdd:PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEarvSGEVYLDGQDifkmdVIELRRRVQMVFQIPNPIPNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 TVRQNIMFGLE-SQLNSDCQYVDNQIDNLINLIGL----KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:PRK14247 98 SIFENVALGLKlNRLVKSKKELQERVRWALEKAQLwdevKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 172 DVLTGQRLGQDLITLWerrkfKMQAIVLITHNISEAVRLSD-VIYVLGGKPAQIMNTYQIKT-PRNQRTEQQIRAK 245
Cdd:PRK14247 178 DPENTAKIESLFLELK-----KDMTIVLVTHFPQQAARISDyVAFLYKGQIVEWGPTREVFTnPRHELTEKYVTGR 248
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
9-259 |
1.61e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 91.22 E-value: 1.61e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 9 VDHVSKSFilSKQRQSEL-ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAiTFDGNLVTAPN------- 80
Cdd:PRK13645 9 LDNVSYTY--AKKTPFEFkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGDYAIPANlkkikev 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ----RRMSMVFQ--NFALFPwLTVRQNIMFGlESQLNSDCQYVDNQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFAR 153
Cdd:PRK13645 86 krlrKEIGLVFQfpEYQLFQ-ETIEKDIAFG-PVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 154 ALAVEPELLLLDEPFSALDvltgQRLGQDLITLWER-RKFKMQAIVLITHNISEAVRLSDVIYVLG-------GKPAQI- 224
Cdd:PRK13645 164 IIAMDGNTLVLDEPTGGLD----PKGEEDFINLFERlNKEYKKRIIMVTHNMDQVLRIADEVIVMHegkvisiGSPFEIf 239
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 922315154 225 -----MNTYQIKTPRNQRTEQQIRAKTMAITDQFKRDMNE 259
Cdd:PRK13645 240 snqelLTKIEIDPPKLYQLMYKLKNKGIDLLNKNIRTIEE 279
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
18-211 |
2.14e-21 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 89.49 E-value: 2.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQ----SELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGN----LVTAP-----NRRMS 84
Cdd:PRK11629 11 LCKRYQegsvQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQpmskLSSAAkaelrNQKLG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 85 MVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDnLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLL 164
Cdd:PRK11629 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE-MLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 922315154 165 DEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLS 211
Cdd:PRK11629 170 DEPTGNLDARNADSIFQLLGELNRLQG---TAFLVVTHDLQLAKRMS 213
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
25-220 |
4.75e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 88.44 E-value: 4.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 25 ELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR-----RMSMVFQNFALFPWlTVR 99
Cdd:cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRkslrsMIGVVLQDTFLFSG-TIM 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 100 QNIMFGLESQLNSDCQYVDN--QIDNLInliglKGLKNAYPYE-------LSGGMKQRVGFARALAVEPELLLLDEPFSA 170
Cdd:cd03254 95 ENIRLGRPNATDEEVIEAAKeaGAHDFI-----MKLPNGYDTVlgenggnLSQGERQLLAIARAMLRDPKILILDEATSN 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 922315154 171 LDVLTGQRLGQDLITLWERRKFkmqaiVLITHNISeAVRLSDVIYVL-GGK 220
Cdd:cd03254 170 IDTETEKLIQEALEKLMKGRTS-----IIIAHRLS-TIKNADKILVLdDGK 214
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
28-232 |
7.91e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 88.89 E-value: 7.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAI------TFDGNLVTAPNRRMSMVFQN-FALFPWLTVRQ 100
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVlvsgidTGDFSKLQGIRKLVGIVFQNpETQFVGRTVEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 101 NIMFGLESQLNSDCQyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLG 180
Cdd:PRK13644 98 DLAFGPENLCLPPIE-IRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 181 QDLITLWERRKfkmqAIVLITHNISEaVRLSDVIYV-------LGGKPAQIMNTYQIKT 232
Cdd:PRK13644 177 ERIKKLHEKGK----TIVYITHNLEE-LHDADRIIVmdrgkivLEGEPENVLSDVSLQT 230
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
27-214 |
9.91e-21 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 87.46 E-value: 9.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA--PNR---RMSMVFQNFALFPwLTVRQN 101
Cdd:PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlkPEIyrqQVSYCAQTPTLFG-DTVYDN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFGL--------ESQLNSDCQYV---DNQIDNLINliglkglknaypyELSGGMKQRVGFARALAVEPELLLLDEPFSA 170
Cdd:PRK10247 101 LIFPWqirnqqpdPAIFLDDLERFalpDTILTKNIA-------------ELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 922315154 171 LDVlTGQRLGQDLITLWERRkfKMQAIVLITHNISEAVRLSDVI 214
Cdd:PRK10247 168 LDE-SNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINHADKVI 208
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
31-249 |
1.11e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 88.65 E-value: 1.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN---------RRMSMVFQnfalFPWL----- 96
Cdd:PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSknkdikqirKKVGLVFQ----FPESqlfee 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 TVRQNIMFGLESQLNSDCQYVDNQIDNLiNLIGL-KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLt 175
Cdd:PRK13649 102 TVLKDVAFGPQNFGVSQEEAEALAREKL-ALVGIsESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK- 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 176 GQRlgqDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL-------GGKPAQI------MNTYQIKTPRNQRTEQQI 242
Cdd:PRK13649 180 GRK---ELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLekgklvlSGKPKDIfqdvdfLEEKQLGVPKITKFAQRL 256
|
....*..
gi 922315154 243 RAKTMAI 249
Cdd:PRK13649 257 ADRGISF 263
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
6-217 |
1.27e-20 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 88.31 E-value: 1.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSK---QRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-- 80
Cdd:PRK15112 4 LLEVRNLSKTFRYRTgwfRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDys 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQN--FALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFARA 154
Cdd:PRK15112 84 yrsQRIRMIFQDpsTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGLARA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922315154 155 LAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK15112 164 LILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI---SYIYVTQHLGMMKHISDQVLVM 223
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
31-217 |
3.00e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 87.48 E-value: 3.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR---------RMSMVFQnfalFPWL----- 96
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKqkeikpvrkKVGVVFQ----FPESqlfee 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 TVRQNIMFGLESqLNSDCQYVDNQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDvlt 175
Cdd:PRK13643 101 TVLKDVAFGPQN-FGIPKEKAEKIAAEKLEMVGLaDEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD--- 176
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 922315154 176 gQRLGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK13643 177 -PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL 217
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
23-220 |
3.70e-20 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 84.67 E-value: 3.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 23 QSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG----NLVTAPNRRMSMVFQNFALFPwLTV 98
Cdd:cd03247 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGvpvsDLEKALSSLISVLNQRPYLFD-TTL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNimfglesqlnsdcqyvdnqidnlinlIGLKglknaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQR 178
Cdd:cd03247 92 RNN--------------------------LGRR---------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ 136
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 922315154 179 LgqdLITLWERRKFKmqAIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:cd03247 137 L---LSLIFEVLKDK--TLIWITHHLTGIEHMDKILFLENGK 173
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
28-217 |
4.12e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 86.71 E-value: 4.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQN-----FALfpwlT 97
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENekwvrSKVGLVFQDpddqvFSS----T 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 VRQNIMFGlESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDvltgq 177
Cdd:PRK13647 97 VWDDVAFG-PVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD----- 170
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 922315154 178 RLGQDLIT--LWERRKfKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK13647 171 PRGQETLMeiLDRLHN-QGKTVIVATHDVDLAAEWADQVIVL 211
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
23-224 |
1.99e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 85.06 E-value: 1.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 23 QSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR-------RMSMVFQN--FALF 93
Cdd:PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRgllalrqQVATVFQDpeQQIF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 94 pWLTVRQNIMFGLESqLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDv 173
Cdd:PRK13638 92 -YTDIDSDIAFSLRN-LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD- 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 174 ltgQRLGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL-------GGKPAQI 224
Cdd:PRK13638 169 ---PAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLrqgqiltHGAPGEV 223
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
10-217 |
2.15e-19 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 87.32 E-value: 2.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 10 DHVSKSFILSKQRqseliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR-----MS 84
Cdd:PRK13657 338 DDVSFSYDNSRQG-----VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAslrrnIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 85 MVFQNFALFPwLTVRQNIMFGLESQLNSDC----------QYVDNQIDNLINLIGLKGLKnaypyeLSGGMKQRVGFARA 154
Cdd:PRK13657 413 VVFQDAGLFN-RSIEDNIRVGRPDATDEEMraaaeraqahDFIERKPDGYDTVVGERGRQ------LSGGERQRLAIARA 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922315154 155 LAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRkfkmqAIVLITHNISeAVRLSDVIYVL 217
Cdd:PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELMKGR-----TTFIIAHRLS-TVRNADRILVF 542
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
31-217 |
2.21e-19 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 86.96 E-value: 2.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQNFALFPWlTVRQNIMFG 105
Cdd:TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADadswrDQIAWVPQHPFLFAG-TIAENIRLA 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 106 LESQlnsdcqyVDNQIDNLINLIGLKGLKNAYPY-----------ELSGGMKQRVGFARALAVEPELLLLDEPFSALDVL 174
Cdd:TIGR02857 420 RPDA-------SDAEIREALERAGLDEFVAALPQgldtpigeggaGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 175 TGQRLGQDLITLWERRkfkmqAIVLITHNIsEAVRLSDVIYVL 217
Cdd:TIGR02857 493 TEAEVLEALRALAQGR-----TVLLVTHRL-ALAALADRIVVL 529
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
27-217 |
4.19e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 82.21 E-value: 4.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPS--YGAITFDGNLVT--APNRRMSMVFQNFALFPWLTVRQNI 102
Cdd:cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLgvSGEVLINGRPLDkrSFRKIIGYVPQDDILHPTLTVRETL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 103 MFGLEsqlnsdcqyvdnqidnlinligLKGlknaypyeLSGGMKQRVGFARALAVEPELLLLDEP------FSALDVL-T 175
Cdd:cd03213 104 MFAAK----------------------LRG--------LSGGERKRVSIALELVSNPSLLFLDEPtsgldsSSALQVMsL 153
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 176 GQRLGQDLITlwerrkfkmqaIVLITHNIS-EAVRLSDVIYVL 217
Cdd:cd03213 154 LRRLADTGRT-----------IICSIHQPSsEIFELFDKLLLL 185
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
18-208 |
7.88e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 81.77 E-value: 7.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN----RRMSMVFQNFALF 93
Cdd:cd03231 6 LTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRdsiaRGLLYLGHAPGIK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 94 PWLTVRQNIMFglesqLNSDCQyvDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDV 173
Cdd:cd03231 86 TTLSVLENLRF-----WHADHS--DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
170 180 190
....*....|....*....|....*....|....*...
gi 922315154 174 LTGQRLGQDLITLWERRKfkmqAIVLITH---NISEAV 208
Cdd:cd03231 159 AGVARFAEAMAGHCARGG----MVVLTTHqdlGLSEAG 192
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
11-229 |
8.86e-19 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 85.54 E-value: 8.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 11 HVSKSFilsKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSM 85
Cdd:TIGR00958 483 DVSFSY---PNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDhhylhRQVAL 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFPWlTVRQNIMFGLESQLNSDCQYVdNQIDNLINLIGlkGLKNAYPYE-------LSGGMKQRVGFARALAVE 158
Cdd:TIGR00958 560 VGQEPVLFSG-SVRENIAYGLTDTPDEEIMAA-AKAANAHDFIM--EFPNGYDTEvgekgsqLSGGQKQRIAIARALVRK 635
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 159 PELLLLDEPFSALDVLTGQRLGQDlitlwerRKFKMQAIVLITHNISeAVRLSDVIYVLGGKPAQIMNTYQ 229
Cdd:TIGR00958 636 PRVLILDEATSALDAECEQLLQES-------RSRASRTVLLIAHRLS-TVERADQILVLKKGSVVEMGTHK 698
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
6-217 |
1.11e-18 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 85.14 E-value: 1.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKS----TLLRMIAG--IIRPSyGAITFDGN-LVTA 78
Cdd:PRK15134 5 LLAIENLSVAF--RQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSppVVYPS-GDIRFHGEsLLHA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 79 PNR--------RMSMVFQNfalfPwlTVRQNIMFGLESQLNSDC--------QYVDNQIDNLINLIGLKGLK---NAYPY 139
Cdd:PRK15134 82 SEQtlrgvrgnKIAMIFQE----P--MVSLNPLHTLEKQLYEVLslhrgmrrEAARGEILNCLDRVGIRQAAkrlTDYPH 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 140 ELSGGMKQRVGFARALAVEPELLLLDEPFSALDVlTGQrlGQDLITLWE-RRKFKMqAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQ--AQILQLLRElQQELNM-GLLFITHNLSIVRKLADRVAVM 230
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
27-212 |
1.88e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 82.45 E-value: 1.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGI------IRPSY-----GAITFDGNLVTAPNRRMSMVFQNFALFPw 95
Cdd:PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMndkvsgYRYSGdvllgGRSIFNYRDVLEFRRRVGMLFQRPNPFP- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 96 LTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGL----KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:PRK14271 115 MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 922315154 172 DVLTGQRLGQDLITLWERrkfkmQAIVLITHNISEAVRLSD 212
Cdd:PRK14271 195 DPTTTEKIEEFIRSLADR-----LTVIIVTHNLAQAARISD 230
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
23-202 |
1.93e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 80.76 E-value: 1.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 23 QSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV----TAPNRRMSMVFQNFALFPWLTV 98
Cdd:PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIkkdlCTYQKQLCFVGHRSGINPYLTL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNIMFGLESQLNSdcqyvdNQIDNLINLIGLKGLKNaYPYE-LSGGMKQRVGFARALAVEPELLLLDEPFSALDvltgQ 177
Cdd:PRK13540 92 RENCLYDIHFSPGA------VGITELCRLFSLEHLID-YPCGlLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD----E 160
|
170 180
....*....|....*....|....*
gi 922315154 178 RLGQDLITLWERRKFKMQAIVLITH 202
Cdd:PRK13540 161 LSLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
27-175 |
2.82e-18 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 84.19 E-value: 2.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNrrmsmvfqnfalFPWL---TVRQNIM 103
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQ------------TSWImpgTIKDNII 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 104 FGLE------------SQLNSDCQYVDNQiDNLInlIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:TIGR01271 509 FGLSydeyrytsvikaCQLEEDIALFPEK-DKTV--LGEGGIT------LSGGQRARISLARAVYKDADLYLLDSPFTHL 579
|
....
gi 922315154 172 DVLT 175
Cdd:TIGR01271 580 DVVT 583
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
28-217 |
2.88e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 81.82 E-value: 2.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR-------RMSMVFQ--NFALFPwLTV 98
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKglmklreSVGMVFQdpDNQLFS-ASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNIMFG-LESQLNSDcqYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQ 177
Cdd:PRK13636 101 YQDVSFGaVNLKLPED--EVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 922315154 178 RLGQDLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK13636 179 EIMKLLVEMQKELGL---TIIIATHDIDIVPLYCDNVFVM 215
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
15-230 |
3.03e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 82.06 E-value: 3.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 15 SFILSKQRQSEL-ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITF---DGNLVTAPN---------- 80
Cdd:PRK13651 9 VKIFNKKLPTELkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWifkDEKNKKKTKekekvleklv 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ----------------RRMSMVFQnFA---LFPwLTVRQNIMFGLESqLNSDCQYVDNQIDNLINLIGL--KGLKNAyPY 139
Cdd:PRK13651 89 iqktrfkkikkikeirRRVGVVFQ-FAeyqLFE-QTIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLdeSYLQRS-PF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 140 ELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSD-VIYVLG 218
Cdd:PRK13651 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK----TIILVTHDLDNVLEWTKrTIFFKD 240
|
250
....*....|..
gi 922315154 219 GKPAQIMNTYQI 230
Cdd:PRK13651 241 GKIIKDGDTYDI 252
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
31-217 |
3.27e-18 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 79.78 E-value: 3.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN----RRMSMVF-----QNFALFPWLTVRQN 101
Cdd:cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSprdaIRAGIAYvpedrKREGLVLDLSVAEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFglesqlnsdcqyvdnqidnlinliglkglknayPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQ 181
Cdd:cd03215 99 IAL---------------------------------SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145
|
170 180 190
....*....|....*....|....*....|....*.
gi 922315154 182 DLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:cd03215 146 LIRELADAGK----AVLLISSELDELLGLCDRILVM 177
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
11-217 |
5.28e-18 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 83.01 E-value: 5.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 11 HVSKSFILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPS--YGAITFDGNLVTAPN-RRMSMVF 87
Cdd:PLN03211 67 HKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKPTKQIlKRTGFVT 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 88 QNFALFPWLTVRQNIMF----GLESQLNSDCQYVdnQIDNLINLIGLKG-----LKNAYPYELSGGMKQRVGFARALAVE 158
Cdd:PLN03211 147 QDDILYPHLTVRETLVFcsllRLPKSLTKQEKIL--VAESVISELGLTKcentiIGNSFIRGISGGERKRVSIAHEMLIN 224
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 159 PELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAV-RLSDVIYVL 217
Cdd:PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK----TIVTSMHQPSSRVyQMFDSVLVL 280
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
6-232 |
1.03e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 82.18 E-value: 1.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQrqseliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGII-RPSY-GAITFDGNLVTAPNRR- 82
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKA------LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYpHGTWdGEIYWSGSPLKASNIRd 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 -----MSMVFQNFALFPWLTVRQNIMFGLESQLNSDCQYVDNQI---DNLINLIGLKGLKNAYPY-ELSGGMKQRVGFAR 153
Cdd:TIGR02633 75 teragIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYlraKNLLRELQLDADNVTRPVgDYGGGQQQLVEIAK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 154 ALAVEPELLLLDEPFSAldvLTGQRLgQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL------GGKPAQIMNT 227
Cdd:TIGR02633 155 ALNKQARLLILDEPSSS---LTEKET-EILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIrdgqhvATKDMSTMSE 230
|
....*
gi 922315154 228 YQIKT 232
Cdd:TIGR02633 231 DDIIT 235
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
22-220 |
1.04e-17 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 79.44 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 22 RQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA-----PNRRMSMVFQNFALFPwL 96
Cdd:cd03248 24 RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQyehkyLHSKVSLVGQEPVLFA-R 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 TVRQNIMFGLESqLNSDCQYVDNQIDNLINLIglKGLKNAYPYE-------LSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:cd03248 103 SLQDNIAYGLQS-CSFECVKEAAQKAHAHSFI--SELASGYDTEvgekgsqLSGGQKQRVAIARALIRNPQVLILDEATS 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 922315154 170 ALDVLTGQRLGQdLITLWERRkfkmQAIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:cd03248 180 ALDAESEQQVQQ-ALYDWPER----RTVLVIAHRLSTVERADQILVLDGGR 225
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
24-217 |
1.13e-17 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 79.45 E-value: 1.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 24 SELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGN-LVTAP----NRRMSMVFQNFALFPwLTV 98
Cdd:cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHdLALADpawlRRQVGVVLQENVLFN-RSI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNIMFGLE----------SQLNSDCQYVDNQIDNLINLIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:cd03252 93 RDNIALADPgmsmervieaAKLAGAHDFISELPEGYDTIVGEQGAG------LSGGQRQRIAIARALIHNPRILIFDEAT 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 922315154 169 SALDVLTGQRLGQDLitlweRRKFKMQAIVLITHNISeAVRLSDVIYVL 217
Cdd:cd03252 167 SALDYESEHAIMRNM-----HDICAGRTVIIIAHRLS-TVKNADRIIVM 209
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
17-217 |
2.31e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 81.04 E-value: 2.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 17 ILSKQRQseLILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIrPSYGAITFDG----NLVTAPNRR-MSMVFQNFA 91
Cdd:PRK11174 357 ILSPDGK--TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGielrELDPESWRKhLSWVGQNPQ 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 92 LFPWlTVRQNIMFGlesqlnsDCQYVDNQIDNLINLIG----LKGLKNAYPYE-------LSGGMKQRVGFARALAVEPE 160
Cdd:PRK11174 434 LPHG-TLRDNVLLG-------NPDASDEQLQQALENAWvsefLPLLPQGLDTPigdqaagLSVGQAQRLALARALLQPCQ 505
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 161 LLLLDEPFSALDVLTGQRLGQDLITLWERrkfkmQAIVLITHNISEAVRLsDVIYVL 217
Cdd:PRK11174 506 LLLLDEPTASLDAHSEQLVMQALNAASRR-----QTTLMVTHQLEDLAQW-DQIWVM 556
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
18-225 |
2.55e-17 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 78.90 E-value: 2.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA-PNRRMSmvfQNFALFPW- 95
Cdd:PRK11231 8 LTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMlSSRQLA---RRLALLPQh 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 96 ------LTVRQNIMFG------LESQLNSDcqyvDNQ-IDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELL 162
Cdd:PRK11231 85 hltpegITVRELVAYGrspwlsLWGRLSAE----DNArVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 163 LLDEPFSALDvLTGQrlgQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVLG-------GKPAQIM 225
Cdd:PRK11231 161 LLDEPTTYLD-INHQ---VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLAnghvmaqGTPEEVM 226
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
6-217 |
7.03e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 79.71 E-value: 7.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT--APNRRM 83
Cdd:PRK15439 11 LLCARSISKQY------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCArlTPAKAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 84 SM----VFQNFALFPWLTVRQNIMFGLESQlnsdcQYVDNQIDNLINLIG--LKGLKNAYPYELSGgmKQRVGFARALAV 157
Cdd:PRK15439 85 QLgiylVPQEPLLFPNLSVKENILFGLPKR-----QASMQKMKQLLAALGcqLDLDSSAGSLEVAD--RQIVEILRGLMR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 158 EPELLLLDEPFSALDVLTGQRLGQDLITLWErrkfKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLA----QGVGIVFISHKLPEIRQLADRISVM 213
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
18-202 |
1.26e-16 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 74.41 E-value: 1.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTApnrrmsmvfqnfalfpwlt 97
Cdd:cd03221 6 LSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIG------------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 vrqnimfglesqlnsdcqYVDnqidnlinliglkglknaypyELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQ 177
Cdd:cd03221 67 ------------------YFE---------------------QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIE 107
|
170 180
....*....|....*....|....*
gi 922315154 178 RLGQDLitlwerRKFKmQAIVLITH 202
Cdd:cd03221 108 ALEEAL------KEYP-GTVILVSH 125
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
7-220 |
1.53e-16 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 79.01 E-value: 1.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFILSKQrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV-----TAPNR 81
Cdd:TIGR01193 474 IVINDVSYSYGYGSN-----ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLkdidrHTLRQ 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 82 RMSMVFQNFALFPWlTVRQNIMFGLESQLNSD-----CQYV--DNQIDNLinLIGLKGLKNAYPYELSGGMKQRVGFARA 154
Cdd:TIGR01193 549 FINYLPQEPYIFSG-SILENLLLGAKENVSQDeiwaaCEIAeiKDDIENM--PLGYQTELSEEGSSISGGQKQRIALARA 625
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 155 LAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERrkfkmqAIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:TIGR01193 626 LLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK------TIIFVAHRLSVAKQSDKIIVLDHGK 685
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
28-235 |
1.61e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 77.13 E-value: 1.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR---------RMSMVFQnfalFPWL-- 96
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKdkyirpvrkRIGMVFQ----FPESql 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 ---TVRQNIMFGlESQLNSDCQYVDNQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PRK13646 99 fedTVEREIIFG-PKNFKMNLDEVKNYAHRLLMDLGFsRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922315154 173 VLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLggKPAQIMntyQIKTPRN 235
Cdd:PRK13646 178 PQSKRQVMRLLKSLQTDEN---KTIILVSHDMNEVARYADEVIVM--KEGSIV---SQTSPKE 232
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
9-218 |
1.82e-16 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 76.22 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 9 VDHVSKSF---------------ILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG 73
Cdd:cd03267 3 VSNLSKSYrvyskepgligslksLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 74 NLvtaPNRRMSMVFQNFALfpwltvrqniMFGLESQLNSDCQYVD-----------------NQIDNLINLIGLKGLKNA 136
Cdd:cd03267 83 LV---PWKRRKKFLRRIGV----------VFGQKTQLWWDLPVIDsfyllaaiydlpparfkKRLDELSELLDLEELLDT 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 137 YPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYV 216
Cdd:cd03267 150 PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG---TTVLLTSHYMKDIEALARRVLV 226
|
..
gi 922315154 217 LG 218
Cdd:cd03267 227 ID 228
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
28-217 |
1.92e-16 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 76.07 E-value: 1.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA-PNRRM-----SMVFQNFALFPWLTVRQN 101
Cdd:PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDwQTAKImreavAIVPEGRRVFSRMTVEEN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFGlesQLNSDCQYVDNQIDNLINLIG-LKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQrlg 180
Cdd:PRK11614 101 LAMG---GFFAERDQFQERIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ--- 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 922315154 181 QDLITLWERRKFKMqAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK11614 175 QIFDTIEQLREQGM-TIFLVEQNANQALKLADRGYVL 210
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
12-216 |
2.22e-16 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 75.77 E-value: 2.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 12 VSKSFILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDgnlvtapnrrmsmvfqnfa 91
Cdd:COG2401 30 VLEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVD------------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 92 lFPWLTvrqnimFGLESQLnSDCQYVDNQIDNLINLIGLKGLKNAYPY-----ELSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:COG2401 91 -VPDNQ------FGREASL-IDAIGRKGDFKDAVELLNAVGLSDAVLWlrrfkELSTGQKFRFRLALLLAERPKLLVIDE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 922315154 167 PFSALDVLTGQRLGQDLITLWerRKFKMQAIVLITH-NISEAVRLSDVIYV 216
Cdd:COG2401 163 FCSHLDRQTAKRVARNLQKLA--RRAGITLVVATHHyDVIDDLQPDLLIFV 211
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-204 |
2.47e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 77.92 E-value: 2.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFIlSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITF----DGNLVTAP-- 79
Cdd:TIGR03269 279 IIKVRNVSKRYI-SVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdEWVDMTKPgp 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 80 ------NRRMSMVFQNFALFPWLTVrqnimfglesqlnsdcqyvdnqIDNLINLIGL----------------------- 130
Cdd:TIGR03269 358 dgrgraKRYIGILHQEYDLYPHRTV----------------------LDNLTEAIGLelpdelarmkavitlkmvgfdee 415
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 131 --KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLItlwERRKFKMQAIVLITHNI 204
Cdd:TIGR03269 416 kaEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL---KAREEMEQTFIIVSHDM 488
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
24-217 |
3.23e-16 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 75.22 E-value: 3.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 24 SELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAP----NRRMSMVFQNFALFPWlTV 98
Cdd:cd03244 16 LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGvDISKIGlhdlRSRISIIPQDPVLFSG-TI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNimfglesqLNSDCQYVDNQIDNLINLIGLKGLKNAYPYEL-----------SGGMKQRVGFARALAVEPELLLLDEP 167
Cdd:cd03244 95 RSN--------LDPFGEYSDEELWQALERVGLKEFVESLPGGLdtvveeggenlSVGQRQLLCLARALLRKSKILVLDEA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 922315154 168 FSALDVLTGQRLgQDLItlweRRKFKMQAIVLITHNIsEAVRLSDVIYVL 217
Cdd:cd03244 167 TASVDPETDALI-QKTI----REAFKDCTVLTIAHRL-DTIIDSDRILVL 210
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
6-232 |
3.50e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 77.66 E-value: 3.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQrqseliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIrP--SY-GAITFDGNLVTAPNRR 82
Cdd:PRK13549 5 LLEMKNITKTFGGVKA------LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PhgTYeGEIIFEGEELQASNIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 ------MSMVFQNFALFPWLTVRQNIMFGLE---------SQLNSDCQYVDNQIDNLINLiglkglkNAYPYELSGGMKQ 147
Cdd:PRK13549 78 dteragIAIIHQELALVKELSVLENIFLGNEitpggimdyDAMYLRAQKLLAQLKLDINP-------ATPVGNLGLGQQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 148 RVGFARALAVEPELLLLDEPFSAldvLTGQRLGQdLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL------GGKP 221
Cdd:PRK13549 151 LVEIAKALNKQARLLILDEPTAS---LTESETAV-LLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIrdgrhiGTRP 226
|
250
....*....|.
gi 922315154 222 AQIMNTYQIKT 232
Cdd:PRK13549 227 AAGMTEDDIIT 237
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
10-172 |
4.31e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 77.55 E-value: 4.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 10 DHVSksFILSKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NL--VT-APNRR-MS 84
Cdd:COG5265 361 ENVS--FGYDPERP---ILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGqDIrdVTqASLRAaIG 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 85 MVFQNFALFPwLTVRQNIMFGlesQLNSDCQYVDN-----QIDNLIN--------LIGLKGLKnaypyeLSGGMKQRVGF 151
Cdd:COG5265 436 IVPQDTVLFN-DTIAYNIAYG---RPDASEEEVEAaaraaQIHDFIEslpdgydtRVGERGLK------LSGGEKQRVAI 505
|
170 180
....*....|....*....|.
gi 922315154 152 ARALAVEPELLLLDEPFSALD 172
Cdd:COG5265 506 ARTLLKNPPILIFDEATSALD 526
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
27-175 |
4.93e-16 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 75.66 E-value: 4.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGnlvtapnrRMSMVFQnfalFPWL---TVRQNIM 103
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------RISFSSQ----FSWImpgTIKENII 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 104 FGLE------------SQLNSDCQYVDNQiDNLInlIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:cd03291 120 FGVSydeyryksvvkaCQLEEDITKFPEK-DNTV--LGEGGIT------LSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
....
gi 922315154 172 DVLT 175
Cdd:cd03291 191 DVFT 194
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
18-217 |
4.97e-16 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 77.39 E-value: 4.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSY---GAITFDGNLVTAPN-RRMSMVFQNFALF 93
Cdd:TIGR00955 31 FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVkgsGSVLLNGMPIDAKEmRAISAYVQQDDLF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 94 -PWLTVRQNIMFGLESQLNSDC------QYVDNQID--NLIN----LIGLKGLKNAypyeLSGGMKQRVGFARALAVEPE 160
Cdd:TIGR00955 111 iPTLTVREHLMFQAHLRMPRRVtkkekrERVDEVLQalGLRKcantRIGVPGRVKG----LSGGERKRLAFASELLTDPP 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 161 LLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVL 217
Cdd:TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGK---TIICTIHQPSSELFELFDKIILM 240
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-217 |
5.52e-16 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 75.35 E-value: 5.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 1 MKKAVLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITF---DGNLV- 76
Cdd:PRK11701 1 MMDQPLLSVRGLTKLY------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYrmrDGQLRd 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 77 ----TAPNRRMSMVFQnfalfpWLTVRQNIMFGLESQLNS------------DCQYVD----------------NQIDNL 124
Cdd:PRK11701 75 lyalSEAERRRLLRTE------WGFVHQHPRDGLRMQVSAggnigerlmavgARHYGDiratagdwlerveidaARIDDL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 125 inliglkglknayPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLgQDLItlweR---RKFKMqAIVLIT 201
Cdd:PRK11701 149 -------------PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL-LDLL----RglvRELGL-AVVIVT 209
|
250
....*....|....*.
gi 922315154 202 HNISEAVRLSDVIYVL 217
Cdd:PRK11701 210 HDLAVARLLAHRLLVM 225
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
25-172 |
5.78e-16 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 77.15 E-value: 5.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 25 ELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIirPSYGaitfDGNLVTAPNRRMSMVFQNfALFPWLTVRQnimf 104
Cdd:COG4178 376 RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGL--WPYG----SGRIARPAGARVLFLPQR-PYLPLGTLRE---- 444
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 105 glesQL---NSDCQYVDNQIDNLINLIGLKGLKN------AYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:COG4178 445 ----ALlypATAEAFSDAELREALEAVGLGHLAErldeeaDWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALD 517
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
31-217 |
6.00e-16 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 75.12 E-value: 6.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKS----TLLRMIAGIIRPSYGAITFDGNLVTA---PNRRMSMVFQN--FALFPWLTVRQN 101
Cdd:PRK10418 22 VSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPcalRGRKIATIMQNprSAFNPLHTMHTH 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 imfGLESQLNSDCQYVDNQIDNLINLIGL---KGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQR 178
Cdd:PRK10418 102 ---ARETCLALGKPADDATLTAALEAVGLenaARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQAR 178
|
170 180 190
....*....|....*....|....*....|....*....
gi 922315154 179 LGQDLITLWERRKFKMqaiVLITHNISEAVRLSDVIYVL 217
Cdd:PRK10418 179 ILDLLESIVQKRALGM---LLVTHDMGVVARLADDVAVM 214
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
43-204 |
6.51e-16 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 75.92 E-value: 6.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 43 IIGSSGVGKS----TLLRMIA--GIIRpsyGAITFDGN-LVTAPNRRM--------SMVFQN--FALFPWLTVRQNIMFG 105
Cdd:PRK09473 47 IVGESGSGKSqtafALMGLLAanGRIG---GSATFNGReILNLPEKELnklraeqiSMIFQDpmTSLNPYMRVGEQLMEV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 106 LesQLN---SDCQYVDNQIDNL--INLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVlTGQrlG 180
Cdd:PRK09473 124 L--MLHkgmSKAEAFEESVRMLdaVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQ--A 198
|
170 180
....*....|....*....|....*
gi 922315154 181 QDLITLWE-RRKFKMqAIVLITHNI 204
Cdd:PRK09473 199 QIMTLLNElKREFNT-AIIMITHDL 222
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
39-261 |
6.80e-16 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 74.75 E-value: 6.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 39 QFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMVFQnfalfpwLTVRQNIM-----FGLESQLNSD 113
Cdd:cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYE-------GTVRDLLSsitkdFYTHPYFKTE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 114 cqyvdnqidnLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVltGQRLgqdLITLWERR--- 190
Cdd:cd03237 99 ----------IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV--EQRL---MASKVIRRfae 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 191 KFKMQAIVlITHNISEAVRLSDVIYVLGGKPAQimNTyQIKTPRNQRTEQQIRAKTMAITdqFKRDMNEMR 261
Cdd:cd03237 164 NNEKTAFV-VEHDIIMIDYLADRLIVFEGEPSV--NG-VANPPQSLRSGMNRFLKNLDIT--FRRDPETGR 228
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
14-217 |
1.20e-15 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 76.05 E-value: 1.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 14 KSFILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV--------TAPNRRMSM 85
Cdd:PRK10261 326 RSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtlspgklQALRRDIQF 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQN--FALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDNLINLIGLKGlKNA--YPYELSGGMKQRVGFARALAVEPEL 161
Cdd:PRK10261 406 IFQDpyASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-EHAwrYPHEFSGGQRQRICIARALALNPKV 484
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 162 LLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK10261 485 IIADEAVSALDVSIRGQIINLLLDL--QRDFGI-AYLFISHDMAVVERISHRVAVM 537
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
27-217 |
1.91e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 72.56 E-value: 1.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGiiRPSY----GAITFDGNLVTA--PNRR----MSMVFQNFALFPWL 96
Cdd:cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYevteGEILFKGEDITDlpPEERarlgIFLAFQYPPEIPGV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 TVRQNImfglesqlnsdcQYVDnqidnlinliglkglknaypYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVlTG 176
Cdd:cd03217 93 KNADFL------------RYVN--------------------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DA 139
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 177 QRLGQDLITLWERRKFkmqAIVLITHN--ISEAVRlSDVIYVL 217
Cdd:cd03217 140 LRLVAEVINKLREEGK---SVLIITHYqrLLDYIK-PDRVHVL 178
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
28-241 |
3.17e-15 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 72.95 E-value: 3.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIrPSYGAITFDG-NLVTAP----NRRMSMVFQNFALFPWLTVRQNI 102
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGrPLSDWSaaelARHRAYLSQQQSPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 103 MFGLESQLNSdcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARAL-----AVEPE--LLLLDEPFSALDVlT 175
Cdd:COG4138 91 ALHQPAGASS--EAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwpTINPEgqLLLLDEPMNSLDV-A 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 176 GQRLGQDLItlwerRKFKMQ--AIVLITHNISEAVRLSDVIYVL-------GGKPAQIM------NTYQIKTPRNQRTEQ 240
Cdd:COG4138 168 QQAALDRLL-----RELCQQgiTVVMSSHDLNHTLRHADRVWLLkqgklvaSGETAEVMtpenlsEVFGVKFRRLEVEGH 242
|
.
gi 922315154 241 Q 241
Cdd:COG4138 243 R 243
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
4-220 |
4.69e-15 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 74.38 E-value: 4.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSKSFiLSKQRQSElILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN--- 80
Cdd:PRK10535 2 TALLELKDIRRSY-PSGEEQVE-VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDada 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ----RR--MSMVFQNFALFPWLTVRQN-----IMFGLESQLNSDcqyvdnQIDNLINLIGLKGLKNAYPYELSGGMKQRV 149
Cdd:PRK10535 80 laqlRRehFGFIFQRYHLLSHLTAAQNvevpaVYAGLERKQRLL------RAQELLQRLGLEDRVEYQPSQLSGGQQQRV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 150 GFARALAVEPELLLLDEPFSALDvltgQRLGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVLGGK 220
Cdd:PRK10535 154 SIARALMNGGQVILADEPTGALD----SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGE 220
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
18-217 |
5.10e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 72.74 E-value: 5.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGII---RPSYGAITFDGNLVTAPNR----------RMS 84
Cdd:PRK09984 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGRTVQREGRlardirksraNTG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 85 MVFQNFALFPWLTVRQNIMFGL--ESQLNSDC-----QYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAV 157
Cdd:PRK09984 90 YIFQQFNLVNRLSVLENVLIGAlgSTPFWRTCfswftREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQ 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 158 EPELLLLDEPFSALDVLTGqRLGQDliTLWERRKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK09984 170 QAKVILADEPIASLDPESA-RIVMD--TLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
28-235 |
5.84e-15 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 74.60 E-value: 5.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMsmvFQNFALfpwltvRQNIMFGle 107
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAW---IQNDSL------RENILFG-- 722
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 108 SQLNSD-CQYVDNQIDNLINL----------IGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTG 176
Cdd:TIGR00957 723 KALNEKyYQQVLEACALLPDLeilpsgdrteIGEKGVN------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 177 QRLGQDLITlwERRKFKMQAIVLITHNISEAVRLsDVIYVLGGKPAQIMNTYQIKTPRN 235
Cdd:TIGR00957 797 KHIFEHVIG--PEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQRD 852
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
28-167 |
6.00e-15 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 74.39 E-value: 6.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAIT-FDGNLVTAPNRRMsmVFQNFA---------LFPWLT 97
Cdd:NF033858 17 LDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEvLGGDMADARHRRA--VCPRIAympqglgknLYPTLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 VRQNI-----MFGLesqlnsDCQYVDNQIDNLINLIGLkglknaYPYE------LSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:NF033858 95 VFENLdffgrLFGQ------DAAERRRRIDELLRATGL------APFAdrpagkLSGGMKQKLGLCCALIHDPDLLILDE 162
|
.
gi 922315154 167 P 167
Cdd:NF033858 163 P 163
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
28-172 |
6.04e-15 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 73.98 E-value: 6.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGN-----LVTAPNRRMSMVFQNFALFPwLTVRQNI 102
Cdd:TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHdladyTLASLRRQVALVSQDVVLFN-DTIANNI 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 103 MFGLESQLNSD-----------CQYVDNQIDNLINLIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:TIGR02203 427 AYGRTEQADRAeieralaaayaQDFVDKLPLGLDTPIGENGVL------LSGGQRQRLAIARALLKDAPILILDEATSAL 500
|
.
gi 922315154 172 D 172
Cdd:TIGR02203 501 D 501
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
21-219 |
6.17e-15 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 74.43 E-value: 6.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 21 QRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRrmsmvfqnfalfPWL---T 97
Cdd:PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQ------------AWImnaT 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 98 VRQNIMFGLE------------SQLNSDCQYVDNqidNLINLIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLD 165
Cdd:PTZ00243 737 VRGNILFFDEedaarladavrvSQLEADLAQLGG---GLETEIGEKGVN------LSGGQKARVSLARAVYANRDVYLLD 807
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 922315154 166 EPFSALDVLTGQRLGQDLITLWERRKFKmqaiVLITHNIsEAVRLSDVIYVLGG 219
Cdd:PTZ00243 808 DPLSALDAHVGERVVEECFLGALAGKTR----VLATHQV-HVVPRADYVVALGD 856
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
28-204 |
7.62e-15 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 71.59 E-value: 7.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMVFQNFALF-----PWL---TVR 99
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAyaaqkPWLlnaTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 100 QNIMFGleSQLN-------SDCQYVDNQIDNLI----NLIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:cd03290 97 ENITFG--SPFNkqrykavTDACSLQPDIDLLPfgdqTEIGERGIN------LSGGQRQRICVARALYQNTNIVFLDDPF 168
|
170 180 190
....*....|....*....|....*....|....*.
gi 922315154 169 SALDVLTGQRLGQDLITLWERRkfKMQAIVLITHNI 204
Cdd:cd03290 169 SALDIHLSDHLMQEGILKFLQD--DKRTLVLVTHKL 202
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-217 |
1.75e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 72.55 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 3 KAVLLDVDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-- 80
Cdd:PRK11160 335 DQVSLTLNNVSFTY----PDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSea 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQNFALFPwLTVRQNIMFGLESQlnSDCQYVD--NQIdNLINLI-GLKGLkNAYPYE----LSGGMKQRVG 150
Cdd:PRK11160 411 alrQAISVVSQRVHLFS-ATLRDNLLLAAPNA--SDEALIEvlQQV-GLEKLLeDDKGL-NAWLGEggrqLSGGEQRRLG 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 151 FARALAVEPELLLLDEPFSALDVLTGQRLGQDLitlweRRKFKMQAIVLITHNISEAVRLsDVIYVL 217
Cdd:PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELL-----AEHAQNKTVLMITHRLTGLEQF-DRICVM 546
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
10-202 |
2.27e-14 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 72.28 E-value: 2.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 10 DHVSKSFILSKQrqselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPsygaitFDGNLVTAPNRRMSMVFQN 89
Cdd:TIGR03719 8 NRVSKVVPPKKE-----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKD------FNGEARPQPGIKVGYLPQE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 90 FALFPWLTVRQNIMFGLESQLNSDCQY---------VDNQIDNLI-------NLIGLKGLKN------------------ 135
Cdd:TIGR03719 77 PQLDPTKTVRENVEEGVAEIKDALDRFneisakyaePDADFDKLAaeqaelqEIIDAADAWDldsqleiamdalrcppwd 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 136 AYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLitlwerRKFKmQAIVLITH 202
Cdd:TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHL------QEYP-GTVVAVTH 216
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
27-226 |
3.80e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 70.20 E-value: 3.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN-----RRMSMVFQNFALFPWLTVRQN 101
Cdd:PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSskafaRKVAYLPQQLPAAEGMTVREL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFG---LESQLNSDCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTG-- 176
Cdd:PRK10575 106 VAIGrypWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQvd 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922315154 177 -----QRLGQDlitlwerrkfKMQAIVLITHNISEAVRLSDVIYVL-------GGKPAQIMN 226
Cdd:PRK10575 186 vlalvHRLSQE----------RGLTVIAVLHDINMAARYCDYLVALrggemiaQGTPAELMR 237
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
44-209 |
4.04e-14 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 71.69 E-value: 4.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 44 IGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN---RR----MSmvfQNFALFPWLTVRQNIM-----FGLESQLn 111
Cdd:NF033858 298 LGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDiatRRrvgyMS---QAFSLYGELTVRQNLElharlFHLPAAE- 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 112 sdcqyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRK 191
Cdd:NF033858 374 -----IAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDG 448
|
170 180
....*....|....*....|.
gi 922315154 192 fkmqaiVLI---THNISEAVR 209
Cdd:NF033858 449 ------VTIfisTHFMNEAER 463
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
27-227 |
8.49e-14 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 69.93 E-value: 8.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYgAIT-----FDG-NL--VTAPNRR------MSMVFQN--F 90
Cdd:COG4170 22 AVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNW-HVTadrfrWNGiDLlkLSPRERRkiigreIAMIFQEpsS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 91 ALFPWLTVRQNIMfglESQLNSDC--------QYVDNQIDNLINLIGLKGLK---NAYPYELSGGMKQRVGFARALAVEP 159
Cdd:COG4170 101 CLDPSAKIGDQLI---EAIPSWTFkgkwwqrfKWRKKRAIELLHRVGIKDHKdimNSYPHELTEGECQKVMIAMAIANQP 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 160 ELLLLDEPFSALDVLTGqrlGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL-------GGKPAQIMNT 227
Cdd:COG4170 178 RLLIADEPTNAMESTTQ---AQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLycgqtveSGPTEQILKS 249
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
6-217 |
1.05e-13 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 68.70 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITF---DGNLV-----T 77
Cdd:TIGR02323 3 LLQVSGLSKSY------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYimrSGAELelyqlS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 78 APNRRMSMVFQnfalfpWLTVRQNIMFGLESQLNS------------DCQYVD----------------NQIDNLinlig 129
Cdd:TIGR02323 77 EAERRRLMRTE------WGFVHQNPRDGLRMRVSAganigerlmaigARHYGNirataqdwleeveidpTRIDDL----- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 130 lkglknayPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVR 209
Cdd:TIGR02323 146 --------PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL--VRDLGL-AVIIVTHDLGVARL 214
|
....*...
gi 922315154 210 LSDVIYVL 217
Cdd:TIGR02323 215 LAQRLLVM 222
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
6-217 |
1.25e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.20 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQrqseliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG---NLVT---AP 79
Cdd:PRK09700 5 YISMAGIGKSFGPVHA------LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNinyNKLDhklAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 80 NRRMSMVFQNFALFPWLTVRQNIMFG-LESQLNSDCQYVD-----NQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFAR 153
Cdd:PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGrHLTKKVCGVNIIDwremrVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 154 ALAVEPELLLLDEPFSAldvLTGQRLGQdLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSS---LTNKEVDY-LFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM 218
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
7-237 |
1.26e-13 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 70.22 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGI--IRPSYGAI--------------- 69
Cdd:TIGR03269 1 IEVKNLTKKF------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIiyhvalcekcgyver 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 70 -TFDGN----------------------LVTAPNRRMSMVFQ-NFALFPWLTVRQNIMFGLESQLNSDCQYVDNQIDnLI 125
Cdd:TIGR03269 75 pSKVGEpcpvcggtlepeevdfwnlsdkLRRRIRKRIAIMLQrTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD-LI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 126 NLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKFKMqaiVLITH--- 202
Cdd:TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM---VLTSHwpe 230
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 922315154 203 ---NISE-AVRLSDVIYVLGGKPAQIMNTY--QIKTPRNQR 237
Cdd:TIGR03269 231 vieDLSDkAIWLENGEIKEEGTPDEVVAVFmeGVSEVEKEC 271
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
18-172 |
1.27e-13 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 67.95 E-value: 1.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMVFQNF--ALFPW 95
Cdd:PRK13543 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHlpGLKAD 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 96 LTVRQNIMFglesqLNSDCQYVDNQI-DNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PRK13543 97 LSTLENLHF-----LCGLHGRRAKQMpGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-167 |
1.29e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 70.09 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 5 VLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTApnrrms 84
Cdd:COG0488 314 KVLELEGLSKSY------GDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGETVKIG------ 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 85 mVF-QNFALF-PWLTVRQNImfglesqlnsdCQYVDNQID-NLINLIGLKGLKNAYPYE----LSGGMKQRVGFARALAV 157
Cdd:COG0488 382 -YFdQHQEELdPDKTVLDEL-----------RDGAPGGTEqEVRGYLGRFLFSGDDAFKpvgvLSGGEKARLALAKLLLS 449
|
170
....*....|
gi 922315154 158 EPELLLLDEP 167
Cdd:COG0488 450 PPNVLLLDEP 459
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
27-225 |
1.79e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 68.47 E-value: 1.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV-----TAPNRRMSMVFQNFALFPWLTVRQN 101
Cdd:PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIqhyasKEVARRIGLLAQNATTPGDITVQEL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFGL--ESQLNSDCQYVDNQ-IDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQR 178
Cdd:PRK10253 102 VARGRypHQPLFTRWRKEDEEaVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQID 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 922315154 179 LGQDLITLWERRKFKMQAIVlitHNISEAVR-------LSDVIYVLGGKPAQIM 225
Cdd:PRK10253 182 LLELLSELNREKGYTLAAVL---HDLNQACRyashliaLREGKIVAQGAPKEIV 232
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
27-214 |
2.96e-13 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 66.67 E-value: 2.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAP----NRRMSMVFQNFALFPWlTVRQN 101
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGiDISTIPledlRSSLTIIPQDPTLFSG-TIRSN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 imfglesqLNSDCQYVDNQIDNLINLIGlkGLKNaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLgQ 181
Cdd:cd03369 102 --------LDPFDEYSDEEIYGALRVSE--GGLN-----LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-Q 165
|
170 180 190
....*....|....*....|....*....|...
gi 922315154 182 DLItlweRRKFKMQAIVLITHniseavRLSDVI 214
Cdd:cd03369 166 KTI----REEFTNSTILTIAH------RLRTII 188
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
6-184 |
3.23e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 67.45 E-value: 3.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilsKQRQselILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLvtapnrRMSM 85
Cdd:PRK09544 4 LVSLENVSVSF---GQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL------RIGY 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFPW--LTVRQNIMfglesqLNSDCQYVDnqIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:PRK09544 72 VPQKLYLDTTlpLTVNRFLR------LRPGTKKED--ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLV 143
|
170 180
....*....|....*....|.
gi 922315154 164 LDEPFSALDVlTGQRLGQDLI 184
Cdd:PRK09544 144 LDEPTQGVDV-NGQVALYDLI 163
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
23-179 |
4.80e-13 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 65.25 E-value: 4.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 23 QSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIrPSYGaitfdGNLVTAPNRRMSMVFQNfALFPWLTVRQNI 102
Cdd:cd03223 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGS-----GRIGMPEGEDLLFLPQR-PYLPLGTLREQL 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 103 mfglesqlnsdcqyvdnqidnlinliglkglknAYPY--ELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRL 179
Cdd:cd03223 85 ---------------------------------IYPWddVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
28-217 |
5.99e-13 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 67.89 E-value: 5.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIiRP--SY-GAITFDGNLVTAPNRRMS------MVFQNFALFPWLTV 98
Cdd:NF040905 17 LDDVNLSVREGEIHALCGENGAGKSTLMKVLSGV-YPhgSYeGEILFDGEVCRFKDIRDSealgivIIHQELALIPYLSI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNIMFGLESQLNS--DCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTG 176
Cdd:NF040905 96 AENIFLGNERAKRGviDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEPTAALNEEDS 175
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 177 QRLgQDLItlwerRKFKMQAI--VLITHNISEAVRLSDVIYVL 217
Cdd:NF040905 176 AAL-LDLL-----LELKAQGItsIIISHKLNEIRRVADSITVL 212
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
7-217 |
7.29e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 67.63 E-value: 7.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFILSKQrqseliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSM- 85
Cdd:PRK11288 5 LSFDGIGKTFPGVKA------LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 -----VFQNFALFPWLTVRQNIMFGlesQLNSDCQYVDNQIDNLINLIGLKGL-----KNAYPYELSGGMKQRVGFARAL 155
Cdd:PRK11288 79 agvaiIYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQLEHLgvdidPDTPLKYLSIGQRQMVEIAKAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922315154 156 AVEPELLLLDEPFSALDVltgqRLGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK11288 156 ARNARVIAFDEPTSSLSA----REIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVF 213
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
38-217 |
7.75e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 68.12 E-value: 7.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 38 HQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT----APNRRMSMVFQNFALFPWLTVRQNIMF--GLESQLN 111
Cdd:TIGR01257 956 NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIEtnldAVRQSLGMCPQHNILFHHLTVAEHILFyaQLKGRSW 1035
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 112 SDCQYvdnQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTgQRLGQDLITLWERRK 191
Cdd:TIGR01257 1036 EEAQL---EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS-RRSIWDLLLKYRSGR 1111
|
170 180
....*....|....*....|....*.
gi 922315154 192 fkmqAIVLITHNISEAVRLSDVIYVL 217
Cdd:TIGR01257 1112 ----TIIMSTHHMDEADLLGDRIAII 1133
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-175 |
1.21e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 67.27 E-value: 1.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 5 VLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFdGNLVtapnrRMS 84
Cdd:TIGR03719 321 KVIEAENLTKAF------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV-----KLA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 85 MVFQNF-ALFPWLTVRQNIMFGLE------SQLNSDcQYV--------DNQidnliNLIGlkglknaypyELSGGMKQRV 149
Cdd:TIGR03719 389 YVDQSRdALDPNKTVWEEISGGLDiiklgkREIPSR-AYVgrfnfkgsDQQ-----KKVG----------QLSGGERNRV 452
|
170 180
....*....|....*....|....*.
gi 922315154 150 GFARALAVEPELLLLDEPFSALDVLT 175
Cdd:TIGR03719 453 HLAKTLKSGGNVLLLDEPTNDLDVET 478
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
18-173 |
1.35e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 64.83 E-value: 1.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 18 LSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNlvtaPNRRMSMVFQNFALF---- 93
Cdd:PRK13538 7 LACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGE----PIRRQRDEYHQDLLYlghq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 94 ----PWLTVRQNIMFGLESQLNSDcqyvDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:PRK13538 83 pgikTELTALENLRFYQRLHGPGD----DEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158
|
....
gi 922315154 170 ALDV 173
Cdd:PRK13538 159 AIDK 162
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
22-219 |
1.50e-12 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 65.67 E-value: 1.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 22 RQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR--MSMVFQNFAL---FPWL 96
Cdd:PRK15056 17 RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKnlVAYVPQSEEVdwsFPVL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 tVRQNIMFG-------LESQLNSDCQYVDNQIDNlinlIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:PRK15056 97 -VEDVVMMGryghmgwLRRAKKRDRQIVTAALAR----VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFT 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 922315154 170 ALDVLTGQRlgqdLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVLGG 219
Cdd:PRK15056 172 GVDVKTEAR----IISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKG 217
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
8-217 |
1.51e-12 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 66.26 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 8 DVDHVSKSFILSKQRQSEL------------ILEAV---SLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFD 72
Cdd:COG4586 3 EVENLSKTYRVYEKEPGLKgalkglfrreyrEVEAVddiSFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 73 GnLVTAPNR-----RMSMVF-QNFALFPWLTVRqnimfglES-QLN------SDCQYvDNQIDNLINLIGLKGLKNAYPY 139
Cdd:COG4586 83 G-YVPFKRRkefarRIGVVFgQRSQLWWDLPAI-------DSfRLLkaiyriPDAEY-KKRLDELVELLDLGELLDTPVR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 140 ELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVL 217
Cdd:COG4586 154 QLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERG---TTILLTSHDMDDIEALCDRVIVI 228
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
67-217 |
1.54e-12 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 67.36 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 67 GAITFDGNLVTAPNRR-----MSMVFQNFALFPwLTVRQNIMFGLESQLNSDCQYVDN--QIDNLINLIGLKGLKNAYPY 139
Cdd:PTZ00265 1277 GKILLDGVDICDYNLKdlrnlFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKfaAIDEFIESLPNKYDTNVGPY 1355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 140 --ELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISeAVRLSDVIYVL 217
Cdd:PTZ00265 1356 gkSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD---KTIITIAHRIA-SIKRSDKIVVF 1431
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
27-223 |
1.98e-12 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 66.66 E-value: 1.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT-----APNRRMSMVFQNFALFPwLTVRQN 101
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTklqldSWRSRLAVVSQTPFLFS-DTVANN 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMFGLESQLNSDCQYVD---NQIDNLINL-------IGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSAL 171
Cdd:PRK10789 409 IALGRPDATQQEIEHVArlaSVHDDILRLpqgydteVGERGVM------LSGGQKQRISIARALLLNAEILILDDALSAV 482
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 922315154 172 DVLTGQRLGQDLitlwerRKFKMQAIVLIT-HNISEAVRLSDVIYVLGGKPAQ 223
Cdd:PRK10789 483 DGRTEHQILHNL------RQWGEGRTVIISaHRLSALTEASEILVMQHGHIAQ 529
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
22-225 |
2.29e-12 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 65.23 E-value: 2.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 22 RQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSY--------GAITFDGNLVTA------PNRRMSMVF 87
Cdd:PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGEPLAAidaprlARLRAVLPQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 88 QNFALFPWlTVRQNIMFGL--ESQLNSDCQYVDNQI-DNLINLIGLKGLKNAYPYELSGGMKQRVGFARALA-------- 156
Cdd:PRK13547 91 AAQPAFAF-SAREIVLLGRypHARRAGALTHRDGEIaWQALALAGATALVGRDVTTLSGGELARVQFARVLAqlwpphda 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 157 -VEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMQAIVlITHNISEAVRLSDVIYVLG-------GKPAQIM 225
Cdd:PRK13547 170 aQPPRYLLLDEPTAALDLAHQHRLLDTVRRL--ARDWNLGVLA-IVHDPNLAARHADRIAMLAdgaivahGAPADVL 243
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
7-217 |
2.76e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 66.28 E-value: 2.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskqRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR---- 82
Cdd:PRK10790 341 IDIDNVSFAY-----RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSvlrq 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 -MSMVFQNFALFPwLTVRQNIMFG-----------LES-QLNSdcqYVDNQIDNLINLIGLKGlknaypYELSGGMKQRV 149
Cdd:PRK10790 416 gVAMVQQDPVVLA-DTFLANVTLGrdiseeqvwqaLETvQLAE---LARSLPDGLYTPLGEQG------NNLSVGQKQLL 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 150 GFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERrkfkmQAIVLITHNISEAVRlSDVIYVL 217
Cdd:PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH-----TTLVVIAHRLSTIVE-ADTILVL 547
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
2-222 |
5.13e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 65.19 E-value: 5.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 2 KKAVLLDVDHVSKSFilskqrqSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAP-- 79
Cdd:COG1245 337 EEETLVEYPDLTKSY-------GGFSLEVEGGEIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLKISYKPqy 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 80 -NRRMSMvfqnfalfpwlTVRQNIMFGLESQLNSdcQYVDNQIdnlINLIGLKGLKNAYPYELSGGMKQRVGFARALAVE 158
Cdd:COG1245 410 iSPDYDG-----------TVEEFLRSANTDDFGS--SYYKTEI---IKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRD 473
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 159 PELLLLDEPFSALDVltGQRLgqdLITLWERR---KFKMQAIVlITHNISEAVRLSDVIYVLGGKPA 222
Cdd:COG1245 474 ADLYLLDEPSAHLDV--EQRL---AVAKAIRRfaeNRGKTAMV-VDHDIYLIDYISDRLMVFEGEPG 534
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-242 |
6.21e-12 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 65.04 E-value: 6.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSksfilskqrqSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN--- 80
Cdd:COG1129 254 EVVLEVEGLS----------VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSprd 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 ---RRMSMVFQN---FALFPWLTVRQNIM---------FGL-----ESQLnsdcqyVDNQIDNLinliglkGLKNAYPY- 139
Cdd:COG1129 324 airAGIAYVPEDrkgEGLVLDLSIRENITlasldrlsrGGLldrrrERAL------AEEYIKRL-------RIKTPSPEq 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 140 ---ELSGGMKQRVGFARALAVEPELLLLDEPFSALDVltgqrlG-----QDLItlwerRKFKMQ--AIVLITHNISEAVR 209
Cdd:COG1129 391 pvgNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDV------GakaeiYRLI-----RELAAEgkAVIVISSELPELLG 459
|
250 260 270
....*....|....*....|....*....|....
gi 922315154 210 LSDVIYVL-GGKPAQIMntyqiktPRNQRTEQQI 242
Cdd:COG1129 460 LSDRILVMrEGRIVGEL-------DREEATEEAI 486
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
39-222 |
6.65e-12 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 63.54 E-value: 6.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 39 QFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSMVFQNFalfpwltvrqnimfgLESQLNSDC---- 114
Cdd:cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY---------------FTKLLEGDVkviv 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 115 --QYVD--------------------NQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:cd03236 92 kpQYVDlipkavkgkvgellkkkderGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 922315154 173 V---LTGQRLGQDLITlwerrkfKMQAIVLITHNISEAVRLSDVIYVLGGKPA 222
Cdd:cd03236 172 IkqrLNAARLIRELAE-------DDNYVLVVEHDLAVLDYLSDYIHCLYGEPG 217
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
28-173 |
8.93e-12 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 63.41 E-value: 8.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIrPSYGAITFDG-NLVTAP-----NRRMSMVFQNFALFPwLTVRQN 101
Cdd:PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGqPLEAWSaaelaRHRAYLSQQQTPPFA-MPVFQY 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 102 IMFGLESQLNSDCqyVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARA-LAVEPE------LLLLDEPFSALDV 173
Cdd:PRK03695 90 LTLHQPDKTRTEA--VASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVvLQVWPDinpagqLLLLDEPMNSLDV 166
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
27-203 |
1.61e-11 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 62.39 E-value: 1.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGiiRPSY----GAITFDGNLVTA--PNRR----MSMVFQNFALFPWL 96
Cdd:COG0396 15 ILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMG--HPKYevtsGSILLDGEDILElsPDERaragIFLAFQYPVEIPGV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 TVRQNIMFGLESQLNSDCQYVD--NQIDNLINLIGLKG--LKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:COG0396 93 SVSNFLRTALNARRGEELSAREflKLLKEKMKELGLDEdfLDRYVNEGFSGGEKKRNEILQMLLLEPKLAILDETDSGLD 172
|
170 180 190
....*....|....*....|....*....|.
gi 922315154 173 VLTGQRLGQDLITLwerRKFKMqAIVLITHN 203
Cdd:COG0396 173 IDALRIVAEGVNKL---RSPDR-GILIITHY 199
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
41-222 |
2.77e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 63.29 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 41 ISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRrmsmVFQNFALfpwlTVRQNIMfGLESQLNSDcqYVDNQ 120
Cdd:PRK13409 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQY----IKPDYDG----TVEDLLR-SITDDLGSS--YYKSE 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 121 IdnlINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVltGQRLgqdLITLWERR---KFKMQAI 197
Cdd:PRK13409 437 I---IKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV--EQRL---AVAKAIRRiaeEREATAL 508
|
170 180
....*....|....*....|....*
gi 922315154 198 VlITHNISEAVRLSDVIYVLGGKPA 222
Cdd:PRK13409 509 V-VDHDIYMIDYISDRLMVFEGEPG 532
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
20-217 |
3.04e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 62.95 E-value: 3.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 20 KQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR----------------- 82
Cdd:PRK10261 24 QEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQvielseqsaaqmrhvrg 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 --MSMVFQN--FALFPWLTVRQNIM--------FGLESQLNSDCQYVDnqidnLINLIGLKGLKNAYPYELSGGMKQRVG 150
Cdd:PRK10261 104 adMAMIFQEpmTSLNPVFTVGEQIAesirlhqgASREEAMVEAKRMLD-----QVRIPEAQTILSRYPHQLSGGMRQRVM 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 151 FARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLweRRKFKMqAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK10261 179 IAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL--QKEMSM-GVIFITHDMGVVAEIADRVLVM 242
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
28-201 |
4.01e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 62.83 E-value: 4.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRP-SYGAITFDGNLVTAPnrRMSMVFQnfalfpwLTVRQNIMFGL 106
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPrSDASVVIRGTVAYVP--QVSWIFN-------ATVRDNILFGS 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 107 ESQLNS-----DCQYVDNQIDNL----INLIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQ 177
Cdd:PLN03130 704 PFDPERyeraiDVTALQHDLDLLpggdLTEIGERGVN------ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777
|
170 180
....*....|....*....|....
gi 922315154 178 RLGQDLItlweRRKFKMQAIVLIT 201
Cdd:PLN03130 778 QVFDKCI----KDELRGKTRVLVT 797
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
31-166 |
8.85e-11 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 61.53 E-value: 8.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR-----MSMVFQNFALFPWLTVRQN---- 101
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEdyrklFSAVFTDFHLFDQLLGPEGkpan 421
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 102 ---IMFGLES-QLNSDCQYVDNQIDNLinliglkglknaypyELSGGMKQRVGFARALAVEPELLLLDE 166
Cdd:PRK10522 422 palVEKWLERlKMAHKLELEDGRISNL---------------KLSKGQKKRLALLLALAEERDILLLDE 475
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
28-172 |
1.12e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 61.53 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGA-ITFDGNLVTAPNrrmsmvfqnfalFPWL---TVRQNIM 103
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSsVVIRGSVAYVPQ------------VSWIfnaTVRENIL 700
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922315154 104 FGLESQLNS-----DCQYVDNQIDNL----INLIGLKGLKnaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PLN03232 701 FGSDFESERywraiDVTALQHDLDLLpgrdLTEIGERGVN------ISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
12-202 |
1.40e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 60.90 E-value: 1.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 12 VSKSFILSKQrqselILEAVSLQvqthqF-----ISIIGSSGVGKSTLLRMIAGIIRPsygaitFDGNLVTAPNRRMSMV 86
Cdd:PRK11819 12 VSKVVPPKKQ-----ILKDISLS-----FfpgakIGVLGLNGAGKSTLLRIMAGVDKE------FEGEARPAPGIKVGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 87 FQNFALFPWLTVRQNIMFG----------------------------------LESQL-NSDCQYVDNQIDnlinlIGLK 131
Cdd:PRK11819 76 PQEPQLDPEKTVRENVEEGvaevkaaldrfneiyaayaepdadfdalaaeqgeLQEIIdAADAWDLDSQLE-----IAMD 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 132 GLK----NAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLitlwerRKFKmQAIVLITH 202
Cdd:PRK11819 151 ALRcppwDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFL------HDYP-GTVVAVTH 218
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
6-217 |
2.07e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.40 E-value: 2.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQrqseliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR--- 82
Cdd:PRK10762 4 LLQLKGIDKAFPGVKA------LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKssq 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 ---MSMVFQNFALFPWLTVRQNIMFGLE--SQLNS-DCQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALA 156
Cdd:PRK10762 78 eagIGIIHQELNLIPQLTIAENIFLGREfvNRFGRiDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922315154 157 VEPELLLLDEPFSAL-DVLTgqrlgQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK10762 158 FESKVIIMDEPTDALtDTET-----ESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF 214
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
43-172 |
4.68e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 57.57 E-value: 4.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 43 IIGSSGVGKSTLLRMIAGIIRPSYGAITF-DGNLVTAPNRRMSMVFQNFALFPWLTVRQNIMFGLESQLNSDCqyvdnqI 121
Cdd:PRK13541 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYYkNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAET------L 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 922315154 122 DNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PRK13541 105 YAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-175 |
4.96e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 59.36 E-value: 4.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 5 VLLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFdGNLVtapnrRMS 84
Cdd:PRK11819 323 KVIEAENLSKSF------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETV-----KLA 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 85 MVFQNF-ALFPWLTVRQNIMFGLE------SQLNSDcQYV--------DNQidnliNLIGlkglknaypyELSGGMKQRV 149
Cdd:PRK11819 391 YVDQSRdALDPNKTVWEEISGGLDiikvgnREIPSR-AYVgrfnfkggDQQ-----KKVG----------VLSGGERNRL 454
|
170 180
....*....|....*....|....*.
gi 922315154 150 GFARALAVEPELLLLDEPFSALDVLT 175
Cdd:PRK11819 455 HLAKTLKQGGNVLLLDEPTNDLDVET 480
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
33-202 |
7.79e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 58.81 E-value: 7.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 33 LQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA------PNRRMSMVFQNFA-----LFPWLTVRQN 101
Cdd:PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVArlqqdpPRNVEGTVYDFVAegieeQAEYLKRYHD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 I---------------MFGLESQL-NSDCQYVDNQIDNLINLIGLKGlkNAYPYELSGGMKQRVGFARALAVEPELLLLD 165
Cdd:PRK11147 104 IshlvetdpseknlneLAKLQEQLdHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLD 181
|
170 180 190
....*....|....*....|....*....|....*..
gi 922315154 166 EPFSALDVLTGQRLGQDLITlwerrkFKmQAIVLITH 202
Cdd:PRK11147 182 EPTNHLDIETIEWLEGFLKT------FQ-GSIIFISH 211
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
27-204 |
8.21e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 59.15 E-value: 8.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRpSYGAITFDG---NLVTAPNRRMS--MVFQNFALFPWlTVRQN 101
Cdd:TIGR01271 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGvswNSVTLQTWRKAfgVIPQKVFIFSG-TFRKN 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 imfglesqLNSDCQYVDNQIDNLINLIGLKGLKNAYP-----------YELSGGMKQRVGFARALAVEPELLLLDEPFSA 170
Cdd:TIGR01271 1312 --------LDPYEQWSDEEIWKVAEEVGLKSVIEQFPdkldfvlvdggYVLSNGHKQLMCLARSILSKAKILLLDEPSAH 1383
|
170 180 190
....*....|....*....|....*....|....
gi 922315154 171 LDVLTGQRLGQDLitlweRRKFKMQAIVLITHNI 204
Cdd:TIGR01271 1384 LDPVTLQIIRKTL-----KQSFSNCTVILSEHRV 1412
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
22-172 |
8.52e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 56.87 E-value: 8.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 22 RQSELILEAVSLQVQTHQFISIIGSSGVGKSTLL-----RMIAGIIRpsyGAITFDGNLVTAP-NRRMSMVFQNFALFPW 95
Cdd:cd03232 17 GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLdvlagRKTAGVIT---GEILINGRPLDKNfQRSTGYVEQQDVHSPN 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 96 LTVRQNIMFglesqlnsdcqyvdnqidnlinliglkglkNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:cd03232 94 LTVREALRF------------------------------SALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
28-261 |
1.32e-09 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 57.13 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLvtapnrrmSMVFQNFALFPWLTVRQNIMFGLE 107
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV--------SVIAISAGLSGQLTGIENIEFKML 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 108 SQlnsdcQYVDNQIDNLINLIGLKGLKNAYPYE----LSGGMKQRVGFARALAVEPELLLLDEPFSALDvltgQRLGQDL 183
Cdd:PRK13546 112 CM-----GFKRKEIKAMTPKIIEFSELGEFIYQpvkkYSSGMRAKLGFSINITVNPDILVIDEALSVGD----QTFAQKC 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 184 ITLWERRKFKMQAIVLITHNISEAVRL-SDVIYVLGGKPAQIMNTYQIkTPRNQRTEQQIRAKTMAITDQFKRDMNEMR 261
Cdd:PRK13546 183 LDKIYEFKEQNKTIFFVSHNLGQVRQFcTKIAWIEGGKLKDYGELDDV-LPKYEAFLNDFKKKSKAEQKEFRNKLDESR 260
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
41-184 |
1.42e-09 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 58.33 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 41 ISIIGSSGVGKSTLLRMIAGIIRPSYGAItfdgnlVTAPNRRMSMVFQ------NFALFPWLTVRQNIMFGLESQLNSDc 114
Cdd:PLN03073 538 IAMVGPNGIGKSTILKLISGELQPSSGTV------FRSAKVRMAVFSQhhvdglDLSSNPLLYMMRCFPGVPEQKLRAH- 610
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922315154 115 qyvdnqidnlINLIGLKGLKNAYP-YELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLI 184
Cdd:PLN03073 611 ----------LGSFGVTGNLALQPmYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV 671
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
37-217 |
2.46e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.69 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 37 THQFISIIGSSGVGKSTLLRMIAGII-RPSYGAITFDGNLVTAPNRrmsmvfqnfalfpwltvrqnimfglesqlnsdcq 115
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELgPPGGGVIYIDGEDILEEVL---------------------------------- 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 116 yvdnqidnlinLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRL--GQDLITLWERRKFK 193
Cdd:smart00382 47 -----------DQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLllLEELRLLLLLKSEK 115
|
170 180 190
....*....|....*....|....*....|
gi 922315154 194 MQAIVLITHNISE------AVRLSDVIYVL 217
Cdd:smart00382 116 NLTVILTTNDEKDlgpallRRRFDRRIVLL 145
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
12-217 |
3.37e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 56.66 E-value: 3.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 12 VSKSFILSKQrqseliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRR------MSM 85
Cdd:PRK10982 4 ISKSFPGVKA------LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKealengISM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFPWLTVRQNI---------MFGLESQLNSDCQYVDNQIDNLINliglkglknayPYE----LSGGMKQRVGFA 152
Cdd:PRK10982 78 VHQELNLVLQRSVMDNMwlgryptkgMFVDQDKMYRDTKAIFDELDIDID-----------PRAkvatLSVSQMQMIEIA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 153 RALAVEPELLLLDEPFSALDvltgQRLGQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL 217
Cdd:PRK10982 147 KAFSYNAKIVIMDEPTSSLT----EKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITIL 207
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
25-214 |
5.92e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 56.49 E-value: 5.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 25 ELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NL--VTAPNRR--MSMVFQNFALFPWlTVR 99
Cdd:TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGlNIakIGLHDLRfkITIIPQDPVLFSG-SLR 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 100 QNimfglesqLNSDCQYVDNQIDNLINLIGLKGLKNAYP-----------YELSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:TIGR00957 1378 MN--------LDPFSQYSDEEVWWALELAHLKTFVSALPdkldhecaeggENLSVGQRQLVCLARALLRKTKILVLDEAT 1449
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 922315154 169 SALDVLTgqrlgQDLITLWERRKFKMQAIVLITHNISEAVRLSDVI 214
Cdd:TIGR00957 1450 AAVDLET-----DNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVI 1490
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
9-206 |
6.91e-09 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 56.05 E-value: 6.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 9 VDHVSKSFILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNlvtapnrrMSMVFQ 88
Cdd:PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS--------AALIAI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 89 NFALFPWLTVRQNI-----MFGLESqlnsdcQYVDNQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:PRK13545 93 SSGLNGQLTGIENIelkglMMGLTK------EKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 164 LDEPFSALDvltgQRLGQDLITLWERRKFKMQAIVLITHNISE 206
Cdd:PRK13545 167 IDEALSVGD----QTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-220 |
7.16e-09 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 55.80 E-value: 7.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 4 AVLLDVDHVSksfilSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN--- 80
Cdd:COG3845 255 EVVLEVENLS-----VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSpre 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 -RRMSMVF-----QNFALFPWLTVRQNIMFGLESQ--------LNSDcqYVDNQIDNLIN-----------LIGLkglkn 135
Cdd:COG3845 330 rRRLGVAYipedrLGRGLVPDMSVAENLILGRYRRppfsrggfLDRK--AIRAFAEELIEefdvrtpgpdtPARS----- 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 136 aypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIY 215
Cdd:COG3845 403 -----LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGA----AVLLISEDLDEILALSDRIA 473
|
....*.
gi 922315154 216 VL-GGK 220
Cdd:COG3845 474 VMyEGR 479
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
43-222 |
1.03e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 55.56 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 43 IIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRrmsmvFQNFALFPWL--------TVRQNImfglesqlnsdc 114
Cdd:COG1245 104 ILGPNGIGKSTALKILSGELKPNLGDYDEEPSWDEVLKR-----FRGTELQDYFkklangeiKVAHKP------------ 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 115 QYVD--------------------NQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVl 174
Cdd:COG1245 167 QYVDlipkvfkgtvrellekvderGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDI- 245
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 922315154 175 tGQRLG-----QDLITlwerrkfKMQAIVLITHNISEAVRLSDVIYVLGGKPA 222
Cdd:COG1245 246 -YQRLNvarliRELAE-------EGKYVLVVEHDLAILDYLADYVHILYGEPG 290
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
43-93 |
1.04e-08 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 55.19 E-value: 1.04e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 43 IIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNR-----RMSMVFQNFALF 93
Cdd:COG4615 363 IVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADNReayrqLFSAVFSDFHLF 418
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
15-172 |
1.62e-08 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 53.42 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 15 SFILSKQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSY---GAITFDGN----LVTAPNRRMSMVF 87
Cdd:cd03233 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYNGIpykeFAEKYPGEIIYVS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 88 QNFALFPWLTVRQNIMFGLESQLNsdcQYVdnqidnlinliglKGlknaypyeLSGGMKQRVGFARALAVEPELLLLDEP 167
Cdd:cd03233 90 EEDVHFPTLTVRETLDFALRCKGN---EFV-------------RG--------ISGGERKRVSIAEALVSRASVLCWDNS 145
|
....*
gi 922315154 168 FSALD 172
Cdd:cd03233 146 TRGLD 150
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
27-204 |
1.67e-08 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 54.09 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRpSYGAITFDG---NLVTAPNRRMS--MVFQNFALFPWlTVRQN 101
Cdd:cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGvswNSVPLQKWRKAfgVIPQKVFIFSG-TFRKN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 imfglesqLNSDCQYVDNQIDNLINLIGLKGLKNAYP-----------YELSGGMKQRVGFARALAVEPELLLLDEPFSA 170
Cdd:cd03289 97 --------LDPYGKWSDEEIWKVAEEVGLKSVIEQFPgqldfvlvdggCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 168
|
170 180 190
....*....|....*....|....*....|....
gi 922315154 171 LDVLTGQRLGQDLitlweRRKFKMQAIVLITHNI 204
Cdd:cd03289 169 LDPITYQVIRKTL-----KQAFADCTVILSEHRI 197
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
6-244 |
1.67e-08 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 54.42 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFILSKQRQSelILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYgAITFDG------NLV--T 77
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVK--AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNW-RVTADRmrfddiDLLrlS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 78 APNRR------MSMVFQ--NFALFPWLTVRQNIMFGL-----ESQLNSDCQYVDNQIDNLINLIGLKGLKNA---YPYEL 141
Cdd:PRK15093 80 PRERRklvghnVSMIFQepQSCLDPSERVGRQLMQNIpgwtyKGRWWQRFGWRKRRAIELLHRVGIKDHKDAmrsFPYEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 142 SGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmQAIVLITHNISEAVRLSDVIYVLggKP 221
Cdd:PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN---TTILLISHDLQMLSQWADKINVL--YC 234
|
250 260
....*....|....*....|....*..
gi 922315154 222 AQIMNTYQ----IKTPRNQRTEQQIRA 244
Cdd:PRK15093 235 GQTVETAPskelVTTPHHPYTQALIRA 261
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
7-172 |
1.89e-08 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 54.64 E-value: 1.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 7 LDVDHVSKSFilskQRQSELILEAVSLQVQTHQFISIIGSSGVGKSTllrmIAGIIRPSY----GAITFDG-NL--VTAP 79
Cdd:PRK11176 342 IEFRNVTFTY----PGKEVPALRNINFKIPAGKTVALVGRSGSGKST----IANLLTRFYdideGEILLDGhDLrdYTLA 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 80 NRR--MSMVFQNFALFPwLTVRQNIMFGLESQLNSD-----------CQYVDNQIDNLINLIGLKGLKnaypyeLSGGMK 146
Cdd:PRK11176 414 SLRnqVALVSQNVHLFN-DTIANNIAYARTEQYSREqieeaarmayaMDFINKMDNGLDTVIGENGVL------LSGGQR 486
|
170 180
....*....|....*....|....*.
gi 922315154 147 QRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PRK11176 487 QRIAIARALLRDSPILILDEATSALD 512
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
41-222 |
4.18e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 51.80 E-value: 4.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 41 ISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAPnrrmsmvfqnfalfpwltvrqnimfglesqlnsdcQYVDn 119
Cdd:cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGiTPVYKP-----------------------------------QYID- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 120 qidnlinliglkglknaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALDVltGQRLGQDLITlwerRKFKMQA--- 196
Cdd:cd03222 72 ---------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI--EQRLNAARAI----RRLSEEGkkt 124
|
170 180
....*....|....*....|....*.
gi 922315154 197 IVLITHNISEAVRLSDVIYVLGGKPA 222
Cdd:cd03222 125 ALVVEHDLAVLDYLSDRIHVFEGEPG 150
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
41-222 |
6.84e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 52.89 E-value: 6.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 41 ISIIGSSGVGKSTLLRMIAGIIRPSYGaitfdgNLVTAPNrrMSMVFQNFA---LFPW--------LTVRQNImfglesq 109
Cdd:PRK13409 102 TGILGPNGIGKTTAVKILSGELIPNLG------DYEEEPS--WDEVLKRFRgteLQNYfkklyngeIKVVHKP------- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 110 lnsdcQYVD--------------------NQIDNLINLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFS 169
Cdd:PRK13409 167 -----QYVDlipkvfkgkvrellkkvderGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS 241
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 922315154 170 ALDVltGQRLG-QDLItlweRRKFKMQAIVLITHNIseAV--RLSDVIYVLGGKPA 222
Cdd:PRK13409 242 YLDI--RQRLNvARLI----RELAEGKYVLVVEHDL--AVldYLADNVHIAYGEPG 289
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
27-217 |
6.91e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.06 E-value: 6.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLV-----TAPNRRMSMVFQNFALFPWlTVRQN 101
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVakfglTDLRRVLSIIPQSPVLFSG-TVRFN 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 I-------MFGLESQLNSdcQYVDNQIDNliNLIGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVL 174
Cdd:PLN03232 1330 IdpfsehnDADLWEALER--AHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 922315154 175 TgqrlgQDLITLWERRKFKMQAIVLITHNISEAVRlSDVIYVL 217
Cdd:PLN03232 1406 T-----DSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVL 1442
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
27-172 |
1.30e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.42 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGiiRPSYGAITFDGNLVTAP------NRRMSMVFQNFALFPWLTVRQ 100
Cdd:TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTGVITGGDRLVNGRpldssfQRSIGYVQQQDLHLPTSTVRE 855
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 101 NIMFGLE-SQLNSDCQYVDNQ-IDNLINLIGLKGLKNAY---PYE-LSGGMKQRVGFARALAVEPELLL-LDEPFSALD 172
Cdd:TIGR00956 856 SLRFSAYlRQPKSVSKSEKMEyVEEVIKLLEMESYADAVvgvPGEgLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLD 934
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
27-202 |
1.46e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 51.18 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGiiRPSY----GAITFDGNLVT--APNRRMSM----VFQNFALFPWL 96
Cdd:CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYkileGDILFKGESILdlEPEERAHLgiflAFQYPIEIPGV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 TvrqNIMFgLESQLNSD-CQYVDNQIDNL---------INLIGLKG-LKNAYPYE-LSGGMKQRVGFARALAVEPELLLL 164
Cdd:CHL00131 100 S---NADF-LRLAYNSKrKFQGLPELDPLefleiinekLKLVGMDPsFLSRNVNEgFSGGEKKRNEILQMALLDSELAIL 175
|
170 180 190
....*....|....*....|....*....|....*...
gi 922315154 165 DEPFSALDVLTGQRLGQDLITLwerrKFKMQAIVLITH 202
Cdd:CHL00131 176 DETDSGLDIDALKIIAEGINKL----MTSENSIILITH 209
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
27-173 |
5.79e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 49.40 E-value: 5.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGiiRPSY----GAITFDGN--LVTAPNRRMS----MVFQNFALFPWL 96
Cdd:PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG--REDYevtgGTVEFKGKdlLELSPEDRAGegifMAFQYPVEIPGV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 97 TVRqnimFGLESQLNSDCQYVDNQ----------IDNLINLIGLKG--LKNAYPYELSGGMKQRVGFARALAVEPELLLL 164
Cdd:PRK09580 94 SNQ----FFLQTALNAVRSYRGQEpldrfdfqdlMEEKIALLKMPEdlLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL 169
|
....*....
gi 922315154 165 DEPFSALDV 173
Cdd:PRK09580 170 DESDSGLDI 178
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
25-173 |
5.82e-07 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 50.13 E-value: 5.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 25 ELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIrPSYG---AITFDGNLVTAPNR-RMSM-VFQNFALFPwLTVR 99
Cdd:TIGR00954 465 DVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGgrlTKPAKGKLFYVPQRpYMTLgTLRDQIIYP-DSSE 542
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 100 QNIMFGL-ESQLNsdcQYVDN-QIDNLINL-IGLKGLKNaYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDV 173
Cdd:TIGR00954 543 DMKRRGLsDKDLE---QILDNvQLTHILEReGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
141-230 |
9.05e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 49.28 E-value: 9.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 141 LSGGMKQRVGFARALAVEPELLLLDEPFSALDVltGQRlgQDLITLWERRKFKMQAIVLITHNISEAVRLSDVIYVL--- 217
Cdd:PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV--SAR--NDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMhqg 479
|
90
....*....|....*.
gi 922315154 218 ---GGKPAQIMNTYQI 230
Cdd:PRK15439 480 eisGALTGAAINVDTI 495
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
42-220 |
1.07e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 49.64 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 42 SIIGSSGVGKSTLLRMIAGIIRPSYGAITF-DGNLVTAPN-----RRMSMVFQNFALFPwLTVRQNIMFGL--------- 106
Cdd:PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIInDSHNLKDINlkwwrSKIGVVSQDPLLFS-NSIKNNIKYSLyslkdleal 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 107 ESQLNSD-----------------CQYVDNQIDNLINLIGLKGLKNAY--------------------------PYE--- 140
Cdd:PTZ00265 494 SNYYNEDgndsqenknkrnscrakCAGDLNDMSNTTDSNELIEMRKNYqtikdsevvdvskkvlihdfvsalpdKYEtlv 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 141 ------LSGGMKQRVGFARALAVEPELLLLDEPFSALDVlTGQRLGQDLITLWERRKFKMQaiVLITHNISeAVRLSDVI 214
Cdd:PTZ00265 574 gsnaskLSGGQKQRISIARAIIRNPKILILDEATSSLDN-KSEYLVQKTINNLKGNENRIT--IIIAHRLS-TIRYANTI 649
|
....*.
gi 922315154 215 YVLGGK 220
Cdd:PTZ00265 650 FVLSNR 655
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
3-227 |
1.51e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 48.96 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 3 KAVLLDVDHvsksfiLSKQRQSELilEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTapNRR 82
Cdd:PRK10982 247 GEVILEVRN------LTSLRQPSI--RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN--NHN 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 83 MSMVFQN-FAL----------FPWLTVRQNIM----------FGL--ESQLNSDCQYVdnqIDNL-------INLIGlkg 132
Cdd:PRK10982 317 ANEAINHgFALvteerrstgiYAYLDIGFNSLisnirnyknkVGLldNSRMKSDTQWV---IDSMrvktpghRTQIG--- 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 133 lknaypyELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSD 212
Cdd:PRK10982 391 -------SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK----GIIIISSEMPELLGITD 459
|
250
....*....|....*.
gi 922315154 213 VIYVLG-GKPAQIMNT 227
Cdd:PRK10982 460 RILVMSnGLVAGIVDT 475
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
15-225 |
1.63e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 48.47 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 15 SFILSKQRQseLILEavSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTapnrRMS------MVFQ 88
Cdd:PRK10938 10 TFRLSDTKT--LQLP--SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHIT----RLSfeqlqkLVSD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 89 NFA------LFPW-----LTVRQNIMfgLESQLNSDCQYVDNQ--IDNLinliglkgLKNAYPYeLSGGMKQRVGFARAL 155
Cdd:PRK10938 82 EWQrnntdmLSPGeddtgRTTAEIIQ--DEVKDPARCEQLAQQfgITAL--------LDRRFKY-LSTGETRKTLLCQAL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922315154 156 AVEPELLLLDEPFSALDVLTGQRLGQDLITLWErrkfKMQAIVLIT---HNISEAVR----LSDVIYVLGGKPAQIM 225
Cdd:PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQ----SGITLVLVLnrfDEIPDFVQfagvLADCTLAETGEREEIL 223
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
35-229 |
1.74e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 48.86 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 35 VQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTApnrRMSMVFQNFALFPWLTVRQNIMFGLES-QLNSD 113
Cdd:TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT---NISDVHQNMGYCPQFDAIDDLLTGREHlYLYAR 2038
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 114 CQYV-DNQIDNLINL----IGLKGLKNAYPYELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQDLITLWE 188
Cdd:TIGR01257 2039 LRGVpAEEIEKVANWsiqsLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 922315154 189 RRKfkmqAIVLITHNISEAVRLSDVIYVLGGKPAQIMNTYQ 229
Cdd:TIGR01257 2119 EGR----AVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQ 2155
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
7-69 |
3.69e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 47.58 E-value: 3.69e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922315154 7 LDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAI 69
Cdd:PRK15064 320 LEVENLTKGF------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
6-184 |
8.65e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 46.70 E-value: 8.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 6 LLDVDHVSKSFilskqrQSELILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFdgnlvtAPNRRMSM 85
Cdd:PRK10636 312 LLKMEKVSAGY------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL------AKGIKLGY 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 86 VFQNFALFpwltVRQNimfglESQLNSDC----QYVDNQIDNLINLIGLKGLKNAYPYE-LSGGMKQRVGFARALAVEPE 160
Cdd:PRK10636 380 FAQHQLEF----LRAD-----ESPLQHLArlapQELEQKLRDYLGGFGFQGDKVTEETRrFSGGEKARLVLALIVWQRPN 450
|
170 180
....*....|....*....|....
gi 922315154 161 LLLLDEPFSALDVLTGQRLGQDLI 184
Cdd:PRK10636 451 LLLLDEPTNHLDLDMRQALTEALI 474
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-218 |
9.91e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 46.36 E-value: 9.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 3 KAVLLDVDHVSKSFILSKQRQSeliLEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSY-GAITFDGNLVTAPN- 80
Cdd:TIGR02633 254 GDVILEARNLTCWDVINPHRKR---VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFeGNVFINGKPVDIRNp 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 -----RRMSMVFQN---FALFPWLTVRQNIMFgleSQLNSDCQY--VDNQIDNLINLIGLKGL--KNAYPY----ELSGG 144
Cdd:TIGR02633 331 aqairAGIAMVPEDrkrHGIVPILGVGKNITL---SVLKSFCFKmrIDAAAELQIIGSAIQRLkvKTASPFlpigRLSGG 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 922315154 145 MKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQdLITLWERRKFkmqAIVLITHNISEAVRLSDVIYVLG 218
Cdd:TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGV---AIIVVSSELAEVLGLSDRVLVIG 477
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
5-217 |
1.21e-05 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 46.15 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 5 VLLDVDHVSKSFIlskqrqselilEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPN---- 80
Cdd:PRK10762 256 VRLKVDNLSGPGV-----------NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSpqdg 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 81 -----------RR-------MSmVFQNFALfPWLTVRQNIMFGLESQlnSDCQYVDNQIDnLINL--------IGLkglk 134
Cdd:PRK10762 325 langivyisedRKrdglvlgMS-VKENMSL-TALRYFSRAGGSLKHA--DEQQAVSDFIR-LFNIktpsmeqaIGL---- 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 135 naypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALDVLTGQRLGQdLITlwerrKFKMQ--AIVLITHNISEAVRLSD 212
Cdd:PRK10762 396 ------LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ-LIN-----QFKAEglSIILVSSEMPEVLGMSD 463
|
....*
gi 922315154 213 VIYVL 217
Cdd:PRK10762 464 RILVM 468
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
142-173 |
1.37e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 46.01 E-value: 1.37e-05
10 20 30
....*....|....*....|....*....|..
gi 922315154 142 SGGMKQRVGFARALAVEPELLLLDEPFSALDV 173
Cdd:PLN03073 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
26-102 |
3.53e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 44.77 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 26 LILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTA-----PNRRMSMVFQNFALFPWlTVRQ 100
Cdd:PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAyglreLRRQFSMIPQDPVLFDG-TVRQ 1402
|
..
gi 922315154 101 NI 102
Cdd:PTZ00243 1403 NV 1404
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
27-205 |
8.13e-05 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 42.97 E-value: 8.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDG-NLVTAP----NRRMSMVFQNFALFPWlTVRQN 101
Cdd:cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGiDISKLPlhtlRSRLSIILQDPILFSG-SIRFN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 imfglesqLNSDCQYVDNQIDNLINLIGLKGLKNAYPYEL-----------SGGMKQRVGFARALAVEPELLLLDEPFSA 170
Cdd:cd03288 115 --------LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLdavvteggenfSVGQRQLFCLARAFVRKSSILIMDEATAS 186
|
170 180 190
....*....|....*....|....*....|....*
gi 922315154 171 LDVLTGQRLGQDLITlwerrKFKMQAIVLITHNIS 205
Cdd:cd03288 187 IDMATENILQKVVMT-----AFADRTVVTIAHRVS 216
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
42-172 |
1.07e-04 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 43.30 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 42 SIIGSSGVGKSTLLRMIAGiiRPSYGAITFDGNLVTAPNR-----RMS-MVFQNFALFPWLTVRQNIMFGL------ESQ 109
Cdd:PLN03140 910 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKqetfaRISgYCEQNDIHSPQVTVRESLIYSAflrlpkEVS 987
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 110 LNSDCQYVDN-----QIDNLIN-LIGLKGLKNaypyeLSGGMKQRVGFARALAVEPELLLLDEPFSALD 172
Cdd:PLN03140 988 KEEKMMFVDEvmelvELDNLKDaIVGLPGVTG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
27-177 |
1.21e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 43.08 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 27 ILEAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYgaitfdGNLVTAPNRRM-----------------SMVFQN 89
Cdd:PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY------SNDLTLFGRRRgsgetiwdikkhigyvsSSLHLD 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 90 FALFpwLTVRQNIMFG-LES----QLNSDCQYVdnQIDNLINLIGL-KGLKNAYPYELSGGMKQRVGFARALAVEPELLL 163
Cdd:PRK10938 349 YRVS--TSVRNVILSGfFDSigiyQAVSDRQQK--LAQQWLDILGIdKRTADAPFHSLSWGQQRLALIVRALVKHPTLLI 424
|
170
....*....|....
gi 922315154 164 LDEPFSALDVLTGQ 177
Cdd:PRK10938 425 LDEPLQGLDPLNRQ 438
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
31-242 |
2.54e-04 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 42.08 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 31 VSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVT------APNRRMSMVFQN---FALFPWLTVRQN 101
Cdd:PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprspldAVKKGMAYITESrrdNGFFPNFSIAQN 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 102 IMF----------GLESQLNS--DCQYVDNQIDnlinLIGLKGLK-NAYPYELSGGMKQRVGFARALAVEPELLLLDEPF 168
Cdd:PRK09700 362 MAIsrslkdggykGAMGLFHEvdEQRTAENQRE----LLALKCHSvNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922315154 169 SALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVL-GGKPAQIMntyqikTPRNQRTEQQI 242
Cdd:PRK09700 438 RGIDVGAKAEIYKVMRQLADDGK----VILMVSSELPEIITVCDRIAVFcEGRLTQIL------TNRDDMSEEEI 502
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
29-242 |
6.58e-04 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 40.66 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 29 EAVSLQVQTHQFISIIGSSGVGKSTLLRMIAGIIRPSYGAITFDGNLVTAPNRRMSmVFQNFAL----------FPWLTV 98
Cdd:PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA-IRAGIMLcpedrkaegiIPVHSV 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 99 RQNImfglesqlNSDCQYVDNQIDNLINliGLKGLKNAYPY----------------ELSGGMKQRVGFARALAVEPELL 162
Cdd:PRK11288 349 ADNI--------NISARRHHLRAGCLIN--NRWEAENADRFirslniktpsreqlimNLSGGNQQKAILGRWLSEDMKVI 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 163 LLDEPFSALDVLTGQRLGQDLITLWERRKfkmqAIVLITHNISEAVRLSDVIYVlggkpaqiMNTYQI--KTPRNQRTEQ 240
Cdd:PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGV----AVLFVSSDLPEVLGVADRIVV--------MREGRIagELAREQATER 486
|
..
gi 922315154 241 QI 242
Cdd:PRK11288 487 QA 488
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
28-223 |
1.71e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 38.46 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLrmiagiirpsygaitFDGnLVTAPNRRMSMVFQNFAlfpwltvRQNIMFgle 107
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV---------------NEG-LYASGKARLISFLPKFS-------RNKLIF--- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 108 sqlnsdcqyVDnQIDNLINLiGLKGLKNAYPYE-LSGGMKQRVGFARALAVEPE--LLLLDEPFSALDvltgQRLGQDLI 184
Cdd:cd03238 65 ---------ID-QLQFLIDV-GLGYLTLGQKLStLSGGELQRVKLASELFSEPPgtLFILDEPSTGLH----QQDINQLL 129
|
170 180 190
....*....|....*....|....*....|....*....
gi 922315154 185 TLWERRKFKMQAIVLITHNIsEAVRLSDVIYVLGGKPAQ 223
Cdd:cd03238 130 EVIKGLIDLGNTVILIEHNL-DVLSSADWIIDFGPGSGK 167
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
141-215 |
5.60e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 36.57 E-value: 5.60e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 922315154 141 LSGGMKQRVGFARALA---VEPE-LLLLDEPFSALDVLTGQRLGQdliTLWERRKFKMQAIVlITHNiSEAVRLSDVIY 215
Cdd:cd03227 78 LSGGEKELSALALILAlasLKPRpLYILDEIDRGLDPRDGQALAE---AILEHLVKGAQVIV-ITHL-PELAELADKLI 151
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
141-218 |
5.73e-03 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 37.60 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922315154 141 LSGGMKQRVGFARALAVEPELLLLDEPFSALDV--------LTGQRLGQDLitlwerrkfkmqAIVLITHNISEAVRLSD 212
Cdd:PRK13549 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVgakyeiykLINQLVQQGV------------AIIVISSELPEVLGLSD 473
|
....*.
gi 922315154 213 VIYVLG 218
Cdd:PRK13549 474 RVLVMH 479
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
28-63 |
7.39e-03 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 37.28 E-value: 7.39e-03
10 20 30
....*....|....*....|....*....|....*..
gi 922315154 28 LEAVSLQVQTHQFISIIGSSGVGKSTLLR-MIAGIIR 63
Cdd:TIGR03925 353 LAPVYVDFAESPHLLIFGDSESGKTTLLRtIARGIVR 389
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
140-175 |
8.97e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 37.18 E-value: 8.97e-03
10 20 30
....*....|....*....|....*....|....*.
gi 922315154 140 ELSGGMKQRVGFARALAVEPELLLLDEPFSALDVLT 175
Cdd:PRK15064 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT 190
|
|
| |
