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Conserved domains on  [gi|923066030|ref|WP_053449679|]
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MULTISPECIES: flagellin [Stenotrophomonas]

Protein Classification

flagellin( domain architecture ID 11483458)

flagellin polymerizes to form the filaments of bacterial flagella; similar to Vibrio cholerae flagellins A-E, and to Pseudomonas aeruginosa A-type flagellin FliC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-404 1.70e-157

polar flagellin E;


:

Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 448.61  E-value: 1.70e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   2 AQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGS 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  82 LSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAIN- 160
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDl 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 SVVNAKADSLGAASFANgytgTALATDKATADTTYSGLQISVTPPGGTATTITVNDftvKAGESITsATSAAINNKLGET 240
Cdd:PRK08869 161 KSMRSDAKIMGGVSYDA----EGGADKDWTVGAGNTDLNVSFDDKGGETQAITINA---KAGDDIE-ELATYINGQTDGV 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 241 GVMASVNAgviSLASVKDGQTFTLGVSAAtpptGATAATIaglgltetstnggTLTGTSASFVKDLNVTTAEGAQKALSI 320
Cdd:PRK08869 233 GASVSEDG---KLQLFAAGQKVSGGVSFS----GGLAAEL-------------GLGNATAVTVDDLDISTVGGAQQAVAV 292

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 321 VDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVL 400
Cdd:PRK08869 293 IDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSAL 372


                 ....
gi 923066030 401 SLLQ 404
Cdd:PRK08869 373 SLLQ 376
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-404 1.70e-157

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 448.61  E-value: 1.70e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   2 AQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGS 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  82 LSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAIN- 160
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDl 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 SVVNAKADSLGAASFANgytgTALATDKATADTTYSGLQISVTPPGGTATTITVNDftvKAGESITsATSAAINNKLGET 240
Cdd:PRK08869 161 KSMRSDAKIMGGVSYDA----EGGADKDWTVGAGNTDLNVSFDDKGGETQAITINA---KAGDDIE-ELATYINGQTDGV 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 241 GVMASVNAgviSLASVKDGQTFTLGVSAAtpptGATAATIaglgltetstnggTLTGTSASFVKDLNVTTAEGAQKALSI 320
Cdd:PRK08869 233 GASVSEDG---KLQLFAAGQKVSGGVSFS----GGLAAEL-------------GLGNATAVTVDDLDISTVGGAQQAVAV 292

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 321 VDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVL 400
Cdd:PRK08869 293 IDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSAL 372


                 ....
gi 923066030 401 SLLQ 404
Cdd:PRK08869 373 SLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-404 1.69e-51

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 172.74  E-value: 1.69e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:COG1344    3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFT-SQLFQVganagqaiainsvv 163
Cdd:COG1344   83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATdTPPFQV-------------- 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 164 nakadslgaasfangytgtalatdkatadtTYSGlqisvtppggtattitvndftvkagesitsatsaainnklgetgvm 243
Cdd:COG1344  149 ------------------------------DYQG---------------------------------------------- 152

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 244 asvnagvislasvkdgqtftlgvsaatpptgataatiaglgltetstnggtltgtsasfvkdlnvtTAEGAQKALSIVDK 323
Cdd:COG1344  153 ------------------------------------------------------------------DAGQRTAALGALDA 166

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 324 ALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPqnVLSLL 403
Cdd:COG1344  167 ALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLS--LLDLL 244


                 .
gi 923066030 404 Q 404
Cdd:COG1344  245 R 245
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-143 6.24e-36

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 128.61  E-value: 6.24e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030    5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 923066030   85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFT 143
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 5-404 1.17e-21

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 94.34  E-value: 1.17e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030    5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLldgsftsqlfqvganagqaiainsvvn 164
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYI--------------------------- 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  165 akadslgaasFANGYTGTALATDKATADTTYSGlqisvtppggtatTITVNDFTVKAGESITSatsaainnklGETGvma 244
Cdd:TIGR02550 135 ----------FSGTKTDTPPFSEDEGGEVTYNG-------------DGGQRKVQVASNRSMPI----------GHPG--- 178

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  245 svnagvislasvkdGQTFTLGVSAATPPTGATAATIAGLGLTETSTNGGTLTGTSASFVKDLnvttaegaqkalsivDKA 324
Cdd:TIGR02550 179 --------------DKVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALSASLNDL---------------DKA 229

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  325 LESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQvpqnvLSLLQ 404
Cdd:TIGR02550 230 LDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ-----LSLFD 304
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-404 1.70e-157

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 448.61  E-value: 1.70e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   2 AQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGS 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  82 LSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAIN- 160
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDl 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 SVVNAKADSLGAASFANgytgTALATDKATADTTYSGLQISVTPPGGTATTITVNDftvKAGESITsATSAAINNKLGET 240
Cdd:PRK08869 161 KSMRSDAKIMGGVSYDA----EGGADKDWTVGAGNTDLNVSFDDKGGETQAITINA---KAGDDIE-ELATYINGQTDGV 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 241 GVMASVNAgviSLASVKDGQTFTLGVSAAtpptGATAATIaglgltetstnggTLTGTSASFVKDLNVTTAEGAQKALSI 320
Cdd:PRK08869 233 GASVSEDG---KLQLFAAGQKVSGGVSFS----GGLAAEL-------------GLGNATAVTVDDLDISTVGGAQQAVAV 292

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 321 VDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVL 400
Cdd:PRK08869 293 IDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSAL 372


                 ....
gi 923066030 401 SLLQ 404
Cdd:PRK08869 373 SLLQ 376
PRK06819 PRK06819
FliC/FljB family flagellin;
1-403 4.96e-109

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 325.19  E-value: 4.96e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   1 MAQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEG 80
Cdd:PRK06819   1 MAAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  81 SLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSfTSQLFQVGANAGQAIAIN 160
Cdd:PRK06819  81 ALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAED-TTMSIQVGANDGETIDIN 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 -SVVNAKADSLGAASFA-NGYTGTALATDKATADTTYSGLqisvtppgGTATTITVNDFTVKAGESITSATSAAINNKLG 238
Cdd:PRK06819 160 lQKIDSKSLGLGSFSVSgVSGALTSLTFTDTALDTSVTGV--------TTTTALDFSDISTFAKGATVHGIGDVGTDGAY 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 239 ETGVMASVNAGVISLASVKDGQTFTLGVSAATPPTGATAATIAGlglTETSTNGGTLTGTsasfvkdlnvttaegaqkAL 318
Cdd:PRK06819 232 ADGYVIRTTDGKQYKGEVDATNGKVTFADDANGDPITDATKLEA---AAQFSPAGKATAS------------------PL 290

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 319 SIVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQN 398
Cdd:PRK06819 291 ETLDDALKQVDGLRSSLGAVQNRFESTVTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQT 370


                 ....*
gi 923066030 399 VLSLL 403
Cdd:PRK06819 371 VLSLL 375
PRK12806 PRK12806
flagellin; Provisional
 1-405 2.85e-89

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 278.11  E-value: 2.85e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   1 MAQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEG 80
Cdd:PRK12806   1 MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  81 SLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAIn 160
Cdd:PRK12806  81 AMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINF- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 SVVNAKADSLGAASFAngyTGTALATDKATADTTYSG------LQISVTPPG---------------------------- 206
Cdd:PRK12806 160 SIGSIKASSIGGIATA---TGTEVAGAAATDITIAIGggaatsINSSANFTGalngqdatsayakaaaindagigglsvt 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 207 ----------------GTATTITVNDFTVKAGESITSATSA-----AINNKLGETGVMASVNAGVISLASVkDGQTFTLG 265
Cdd:PRK12806 237 astsgtqavgaiggtaGDTYNLTINGVAIYTNLDVATALTNsdlrdAINGVSNQTGVVASLNGGNMTLTAA-DGRNITVT 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 266 VSAATPPTGATAATIAG------------LGLTETSTNGGTLT--GTSASFVKD------LNVTTAEGAQKALSIVDKAL 325
Cdd:PRK12806 316 ESGTGFTAGTDGLTVTGgafdgalrgtlsISAVDTIAIGGTVAniGLSANISKDtvgidsLDVSTASGAQTAIKRIDAAL 395

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 326 ESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVLSLLQR 405
Cdd:PRK12806 396 NSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLGR 475
PRK08026 PRK08026
FliC/FljB family flagellin;
1-404 2.15e-82

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 261.60  E-value: 2.15e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   1 MAQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEG 80
Cdd:PRK08026   1 MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  81 SLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLL--DGSFTsqlFQVGANAGQAIA 158
Cdd:PRK08026  81 ALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLakDGSMK---IQVGANDGETIT 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 159 IN--------------------SVVN--AKADSLGAASFANGYTGTALATDKATADTT---------------------- 194
Cdd:PRK08026 158 IDlkkidsdtlgldgfnvngkgTVANtaATVSDLTAAGATLDTTGLYDVKTKNAALTTadalaklgdgdkvtatatggdy 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 195 ----------YSGLQISVTPPGGTATTITVN------DFTVKAGESITSATSAAinnKLGETGVMASVNAGVISLASVKD 258
Cdd:PRK08026 238 tynaksgkyqAADLAATLTPDVGGTAGASYTikdgtyEVNVDSDGKITLGGSAL---YIDATGNLTTNNAGAATKATLDA 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 259 GQTFTLGVSA-------ATPPTGATAATIAGLGLTETSTNGGTLTGTSASFV-------------------------KDL 306
Cdd:PRK08026 315 LKKTASEGAAtakaalaAAGVTVADGVTAKTVKMSYTDKNGKVIDGGYAVKTgddyyaadydeitgaisatttyytaKDG 394

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 307 NVTT------------------------AEGAQKALSIV------------DKALESVNSVRADLGAIQNRFTSVVANLQ 350
Cdd:PRK08026 395 TTKTaanklggadgktevvtidgktyvaSDGKQTTLAEAaatttenplaalDAAIASIDKFRSSLGAVQNRLDSAVTNLN 474

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....
gi 923066030 351 TSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVLSLLQ 404
Cdd:PRK08026 475 NTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
PRK12802 PRK12802
flagellin; Provisional
 1-404 1.72e-65

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 210.51  E-value: 1.72e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   1 MAQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEG 80
Cdd:PRK12802   1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  81 SLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAIN 160
Cdd:PRK12802  81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFQVGANTGQSNQIT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 SVVNAKADSLGaasfangytgtalatdkatadttysglqisvtppggtattitvndftvkagesitsatsaainnklget 240
Cdd:PRK12802 161 FGLSASFDATG--------------------------------------------------------------------- 171

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 241 gvmasvnagvislasvkdgqtftLGVSAATPPTGATAAtiaglgltetstnggtltgtsasfvkdlnvTTAEGAQKALSI 320
Cdd:PRK12802 172 -----------------------LGVGSGTLITGADSA------------------------------AAETNAQAAITA 198

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 321 VDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVL 400
Cdd:PRK12802 199 IDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVL 278


                 ....
gi 923066030 401 SLLQ 404
Cdd:PRK12802 279 KLLQ 282
PRK12804 PRK12804
flagellin; Provisional
 5-404 8.96e-59

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 193.68  E-value: 8.96e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:PRK12804   3 INHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  85 VGNNLQRIRELAVQSSN-ATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQ---------LFQVGANAG 154
Cdd:PRK12804  83 THSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAapaagtkslTFQIGANAA 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 155 QAIAINsVVNAKADSLGAASfangyTGTALATDKATADttysglqisvtppggtattITVNDFtvkagesitsatsaain 234
Cdd:PRK12804 163 QQLSVN-IEAMSADALGVKD-----TDGTLVTGKSVSD-------------------IDVTKF----------------- 200

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 235 nklgetgvmasvnagvislasvkdgqtftlgvsaatpptgATAATIAGLGLTETstnggtltgtsasfvkdlnvttaega 314
Cdd:PRK12804 201 ----------------------------------------ANAAAAADGGFDDQ-------------------------- 214

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 315 qkaLSIVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQ 394
Cdd:PRK12804 215 ---LKIVDGAIKQVSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQ 291

                        410
                 ....*....|
gi 923066030 395 VPQNVLSLLQ 404
Cdd:PRK12804 292 QPQNVLQLLR 301
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-404 1.69e-51

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 172.74  E-value: 1.69e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:COG1344    3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFT-SQLFQVganagqaiainsvv 163
Cdd:COG1344   83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATdTPPFQV-------------- 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 164 nakadslgaasfangytgtalatdkatadtTYSGlqisvtppggtattitvndftvkagesitsatsaainnklgetgvm 243
Cdd:COG1344  149 ------------------------------DYQG---------------------------------------------- 152

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 244 asvnagvislasvkdgqtftlgvsaatpptgataatiaglgltetstnggtltgtsasfvkdlnvtTAEGAQKALSIVDK 323
Cdd:COG1344  153 ------------------------------------------------------------------DAGQRTAALGALDA 166

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 324 ALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPqnVLSLL 403
Cdd:COG1344  167 ALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLS--LLDLL 244


                 .
gi 923066030 404 Q 404
Cdd:COG1344  245 R 245
PRK12584 PRK12584
flagellin A; Reviewed
 1-404 5.14e-47

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 168.16  E-value: 5.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   1 MAQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEG 80
Cdd:PRK12584   1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  81 SLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAIn 160
Cdd:PRK12584  81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKA- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 SVVNAKADSLGAASFANGYTGTALATDKAT-------ADTTYSGLQIS-------------------------------- 201
Cdd:PRK12584 160 SIGSTTSDKIGQVRIATGALITASGDISLTfkqvdgvNDVTLESVKVSssagtgigvlaevinknsdrtgvkayasvitt 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 202 --VTPPGGTATTITVNDFTVKAGESITSATS-----AAINNKLGETGVMASV-NAGVISLASVkDGQTFTLGVSAATPPT 273
Cdd:PRK12584 240 sdVAVQSGSLSNLTLNGIHIGNIADIKKNDSdgrlvAAINAVTSETGVEAYTdQKGRLNLRSI-DGRGIEIKTDSVSNGP 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 274 GATAATIAGLGLTETSTNGGTLTGTS------------------------------------------------------ 299
Cdd:PRK12584 319 SALTMVNGGQDLTKGSTNYGRLSLTRldardinvvsasdsqhlgfsaigfgesqvaettvnlrdvtgnfnanvksasgan 398

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 300 -----ASFVKDL--NVTTAEGAQKALSIVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKET 372
Cdd:PRK12584 399 ynaviASGNQSLgsGVTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEES 478

                        490       500       510
                 ....*....|....*....|....*....|..
gi 923066030 373 AELTRTQILQQAGTAMLAQANQVPQNVLSLLQ 404
Cdd:PRK12584 479 ANFNKNNILAQSGSYAMSQANTVQQNILRLLT 510
PRK12803 PRK12803
flagellin; Provisional
 4-404 6.77e-42

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 150.34  E-value: 6.77e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   4 VINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLS 83
Cdd:PRK12803   2 IINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  84 EVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAinsVV 163
Cdd:PRK12803  82 EVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQPA---KI 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 164 NAKADSLGAASFANGYTGTALATDKATADTTYSGlqisvtppggtattitvNDFTVKAGEsitsatsaainnklgetgvm 243
Cdd:PRK12803 159 NTPASLSGSQASWTLRVHVGANQDEAIAVNIYAA-----------------NVANLFSGE-------------------- 201

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 244 asvnaGVISLASVKDGQTfTLGVSAATPPTGATAatiaglgltetstNGGTLTgtsasfvkDLNVTTAEGAQKALSIVDK 323
Cdd:PRK12803 202 -----GAQQAAPVQEGAQ-QEGAQAAPAPAAAPA-------------QGGVNS--------PVNVTTTVDANMSLAKIEN 254

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 324 ALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVLSLL 403
Cdd:PRK12803 255 AIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLL 334


                 .
gi 923066030 404 Q 404
Cdd:PRK12803 335 R 335
PRK13588 PRK13588
flagellin B; Provisional
 1-404 1.81e-41

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 153.10  E-value: 1.81e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   1 MAQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEG 80
Cdd:PRK13588   1 MSFRINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  81 SLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAIN 160
Cdd:PRK13588  81 AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKAS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 -------------------SVVNAKA-----------------DSLGAASFANGYTGTALATD--------KATADTTYS 196
Cdd:PRK13588 161 igatssdkighvrmetssfSGEGMLAsaaaqnltevglnfkqvDGVNDYKIETVRISTSAGTGigalseiiNRFSDTLGV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 197 GLQISVTPPGGTA-TTITVNDFT-----------VKAGESiTSATSAAINNKLGETGVMASVNA-GVISLASvKDGQTFT 263
Cdd:PRK13588 241 RASYNVMATGGTPvQSGTVRELTingveigtvndVHKNDA-DGRLINAINSVKDRTGVEASLDIqGRINLTS-IDGRAIS 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 264 L----------GVSAATPPTGATAATIAGLGLTETSTNGGTLTGTSASFV---------------KDLN----------- 307
Cdd:PRK13588 319 VhaasasgqvfGGGNFAGISGTQHAVVGRLTLTRTDARDIIVSGVNFSHVgfhsaqgvaeytvnlRAVRgifdanvasaa 398

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 308 -------------------VTTAEGAQKALSIVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDF 368
Cdd:PRK13588 399 ganangaqaetnsqgigagVTSLKGAMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDF 478

                        490       500       510
                 ....*....|....*....|....*....|....*.
gi 923066030 369 AKETAELTRTQILQQAGTAMLAQANQVPQNVLSLLQ 404
Cdd:PRK13588 479 AEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514
PRK12807 PRK12807
flagellin; Provisional
 5-404 2.03e-39

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 142.65  E-value: 2.03e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:PRK12807   3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMNS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLdgsftsqlfqvganagqaiainsvvn 164
Cdd:PRK12807  83 VSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLL-------------------------- 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 165 akadslgaasfangytGTALATDKATADTTYSGLQISVTPPGGTATTITVNDFTVKAGEsitsatsaainnklgetgvma 244
Cdd:PRK12807 137 ----------------AGTGAVTIGSTSISGAEISIETLDSSATNQQITIKLANTTAEK--------------------- 179

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 245 svnagvislasvkdgqtftLGVSAATPPTGATAATiaglgltetstnggtltgtsasfvkdlnvttaeGAQKALSIVDKA 324
Cdd:PRK12807 180 -------------------LGIDATTSNISISGAA---------------------------------SALAAISALNTA 207

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 325 LESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVLSLLQ 404
Cdd:PRK12807 208 LNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
PRK12808 PRK12808
flagellin; Provisional
 5-404 1.49e-37

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 141.63  E-value: 1.49e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:PRK12808   3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQL------------------ 146
Cdd:PRK12808  83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSINIqtldssdgdkqigidlks 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 147 ----------FQVGAN--------AGQAIAINSVVNAKADSLGA----------------ASFANGY------------T 180
Cdd:PRK12808 163 atlealgindLSIGANtdieavstKIAALDKNTIAKATVEAKAAfdkakddtkaedsnilDAAADGFkdgkaddaakdvE 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 181 GTALATDKATADTTYSGLQISVTPPGGTATTITVNDFTVKAGESITSATSAAINNKLGETGVMASVNAGVISLASVKDGQ 260
Cdd:PRK12808 243 AIKTALSAFTGAATLEEAEAAKTAFEVAQKDLVDTYTKKAALTKDAVADLDTAKTTSTRSKAAKDLVAAYDKAKSGAKPN 322

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 261 TFTLGVSAATPPTGATAATIAGLGLTETSTNGGTLTGTSASFVKDLNVT----------TAEGAQKALSIVDKALESVNS 330
Cdd:PRK12808 323 DVAKAYLEAKMAYEKDNNAIDGKSKLEAADDALEKDAIKTDASKVLVPKleaakkattnSKADSLDAVKAIDEALKTVAD 402

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 923066030 331 VRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVLSLLQ 404
Cdd:PRK12808 403 NRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 476
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-143 6.24e-36

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 128.61  E-value: 6.24e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030    5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 923066030   85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFT 143
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
PRK08411 PRK08411
flagellin; Reviewed
 1-404 1.09e-33

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 132.03  E-value: 1.09e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   1 MAQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEG 80
Cdd:PRK08411   1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  81 SLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAIn 160
Cdd:PRK08411  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKA- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 161 SVVNAKADSLGAASFANG-------------------------------YTGTALA---------TDKATADTTYSGLQI 200
Cdd:PRK08411 160 TIGATQSSKIGVTRFETGarittsgvvqltiknyngiddfkfqnvvistSVGTGLGalaeeinknADKTGVRATFDVETT 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 201 SVTPPGGTATT-------ITVNDFTVKAGESiTSATSAAINNKLGETGVMASV--------------------------- 246
Cdd:PRK08411 240 GVAAIKAGTTSddfaingVTIGKVEYKDGDG-NGALVAAINSVKDTTGVEASIdengklvltsrdgrgikidgdigggsg 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 247 -------NAGVISLA----------------------------------------------------------------- 254
Cdd:PRK08411 319 ilanmkeNYGRLSLVkndgkdilisgtnlsfagmgatdmisqasvslreskgqidanvadamgfnsykggvmiqgfssvs 398

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 255 ----------------SVKDGQTFTLGVSAATPPTGATAATI-----AGLGLTETSTNGGTLT-GTSASFVKDLN--VTT 310
Cdd:PRK08411 399 afmssegsgfsqgsgySVGSGKNYSVGLSSGIQISSASAMSTvyvvsAGSGFSSGSNLSQFAAmKTTAANVKDETagVTT 478

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 311 AEGAQKALSIVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLA 390
Cdd:PRK08411 479 LKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMA 558

                        570
                 ....*....|....
gi 923066030 391 QANQVPQNVLSLLQ 404
Cdd:PRK08411 559 QANAVQQNVLRLLQ 572
PRK13589 PRK13589
flagellin A;
1-404 4.60e-31

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 124.75  E-value: 4.60e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   1 MAQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEG 80
Cdd:PRK13589   1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  81 SLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAI- 159
Cdd:PRK13589  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKAt 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 160 -----NSVVNAKADSLGAASFANGYTGTALATDKATADTTYSGLQISVT------------------------------- 203
Cdd:PRK13589 161 igatqSSKIGVTRFETGGRSFTSGEVQLTIKNYNGIDDFKFQKVVISTSvgtglgalaeeinksadktgvratftvettg 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 204 ----PPGGTATTITVNDFTV-----KAGESiTSATSAAINNKLGETGVMASVNA-------------------------- 248
Cdd:PRK13589 241 vaaiKAGTTSQDFAINGVTIgqvayKDGDG-NGALVSAINSVKDTTGVEASKDAngqlvltsrdgrgikidgnigggagi 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 249 --------GVISLA------------------------------------------------------------------ 254
Cdd:PRK13589 320 lanmkenyGRLSLVkndgkdilisgtnlsaigmgatdmisqasvslreskgridaniadamgfnsykgggkfvvtggfss 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 255 ------------------SVKDGQTFTLGVSAATPPTGATAATI------AGLGLTETSTNGGTLT-GTSASFVKD--LN 307
Cdd:PRK13589 400 vsafmssegsgfsrgsgySVGSGKNYSVGLSQGIQIISSASAMStvynvsAGSGFSSGSGLSQFATmKTTAAGVKDetAG 479

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 308 VTTAEGAQKALSIVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTA 387
Cdd:PRK13589 480 VTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSY 559

                        570
                 ....*....|....*..
gi 923066030 388 MLAQANQVPQNVLSLLQ 404
Cdd:PRK13589 560 AMSQANAVQQNVLKLLQ 576
PRK12805 PRK12805
FliC/FljB family flagellin;
5-403 2.98e-25

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 104.18  E-value: 2.98e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:PRK12805   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTsqlfqvganagqaiainsvvn 164
Cdd:PRK12805  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAT--------------------- 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 165 akadslGAASfangytgtalatdkatadttysglQISVTPPGGTATTITVNDFTVKAgesitsatsaainnklgetgvma 244
Cdd:PRK12805 142 ------GAAT------------------------QVSIQASDKANDLINIDLFNAKG----------------------- 168

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 245 sVNAGVISLASvkdgqtftlgvsaatpptgataatiaglgltetstnGGTLTGTSAsfvkdLNVTTAEGAQKALSIVDKA 324
Cdd:PRK12805 169 -LSAGTITLGS------------------------------------GSTVAGYSA-----LSVADADSSQEATEAIDEL 206

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 923066030 325 LESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVLSLL 403
Cdd:PRK12805 207 INNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 318-403 2.07e-22

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 90.47  E-value: 2.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  318 LSIVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQ 397
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 923066030  398 NVLSLL 403
Cdd:pfam00700  81 SLLNLL 86
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 5-404 1.17e-21

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 94.34  E-value: 1.17e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030    5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLldgsftsqlfqvganagqaiainsvvn 164
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYI--------------------------- 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  165 akadslgaasFANGYTGTALATDKATADTTYSGlqisvtppggtatTITVNDFTVKAGESITSatsaainnklGETGvma 244
Cdd:TIGR02550 135 ----------FSGTKTDTPPFSEDEGGEVTYNG-------------DGGQRKVQVASNRSMPI----------GHPG--- 178

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  245 svnagvislasvkdGQTFTLGVSAATPPTGATAATIAGLGLTETSTNGGTLTGTSASFVKDLnvttaegaqkalsivDKA 324
Cdd:TIGR02550 179 --------------DKVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALSASLNDL---------------DKA 229

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  325 LESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQvpqnvLSLLQ 404
Cdd:TIGR02550 230 LDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ-----LSLFD 304
PRK06663 PRK06663
flagellar hook-associated protein 3;
13-384 1.39e-21

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 95.91  E-value: 1.39e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  13 NAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSEVGNNLQRI 92
Cdd:PRK06663  12 NLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQSITNILQRA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  93 RELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDG-SFTSQLFQvganagqaiainsVVNAKADSLG 171
Cdd:PRK06663  92 RELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSGtKIDTEPFE-------------VIRGNIKGLQ 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 172 AASFANGYTGTALATDKATADT-TYSGLQISVTPPGGTA---------TTITVNDFTVKAGESITsATSAAINNKLGET- 240
Cdd:PRK06663 159 GDAGSNQIIGVEYNGDIGEQNReIENGIYIPVNYPGNKVfwgtnqsiiSSVDASGYVVKEDQKIY-IDGVEIHLSAGDTi 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 241 -GVMASVNAgviSLASVK---DGQTFTLGVSAATPP----TGATAATI-AGLGLTETST--------NGGTLTGTS---- 299
Cdd:PRK06663 238 dDIIAKIND---SSAPVKaslDPVLNSISLKTTTPHqiwlEDEEGGTVlQDLGLITNATkeppynysNSAEVSGRSifds 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 300 ASFVKD--LNVTTAEGAQKALSIVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTR 377
Cdd:PRK06663 315 LIQLRDalLNNDQELIGGRALGEIDEALDNLLTTLADLGAKENRLDRSYARISKEKLDMTEALSKNEDIDVTEAITNLNM 394


                 ....*..
gi 923066030 378 TQILQQA 384
Cdd:PRK06663 395 LELAHQA 401
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 5-384 2.19e-17

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 83.04  E-value: 2.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:PRK08870   3 ISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTS-QLFQVGAN----------- 152
Cdd:PRK08870  83 VEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQSGtQPFAFDASgnvvysgdqgq 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 153 ------AGQAIAIN--------SVVNAKADSLGAASFANGYTGTALA--TDKATADTTYSGLQISVTPPGGTATTITVND 216
Cdd:PRK08870 163 rqvqvaDSVQVATNdpgdevfmSVPNGGGDYVPNANASNTGTGLLGSasITDPSDPVNGDTYTITFTDNGAGGTNTYVTD 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 217 ftvkageSITSATSAAINNKLGETGVMASVNAGVIslASVKDGQTFTLgvsaaTPPTgaTAATIAGLGLTETSTNGGTLT 296
Cdd:PRK08870 243 -------SSTGTVVTAQAYDAGQPINFNGVEVQIS--GAPAAGDSFTL-----TPAP--QASIFDTLDDAIAALESPVST 306

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 297 GTS-ASFVKDLNVTTAEgaqkalsiVDKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAEL 375
Cdd:PRK08870 307 PAAdAALQNALAQALRN--------LDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEF 378


                 ....*....
gi 923066030 376 TRTQILQQA 384
Cdd:PRK08870 379 ELQQAALQA 387
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 5-370 1.16e-16

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 79.65  E-value: 1.16e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSE 84
Cdd:PRK07701   3 VTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQ 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  85 VGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLvsevdrvakqadfngtklldgsfTSQLFQVganagqaiainsvvn 164
Cdd:PRK07701  83 ATDILQRARELAVQAANGTNTQTDRQAIAQEIEQL-----------------------KEQLIQI--------------- 124

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 165 akadslgaasfangytgtalatdkatADTTYSGLQISvtppGGTATtiTVNDFTVKAGESITSATSAAINNKLGEtGVMA 244
Cdd:PRK07701 125 --------------------------ANTQYNGRYIF----NGTKT--DTPPVTDDGDNIENSTDSGDIEFEIAK-GNTI 171

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 245 SVNagvislasvkdgqtfTLGVSAATPPTGATAATIAGLGLTETSTNGGTLTGTSAsfvkdlnvttaegaqkALSIVDKA 324
Cdd:PRK07701 172 NVN---------------VPGDKAFGGQSGGGSNLFEMLDNLENALDSGDTQGVSN----------------LLSDIDQH 220

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 923066030 325 LESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAK 370
Cdd:PRK07701 221 IDNVLAVRAELGARSNRLELIENRLSDQEVNATKLLSDNEDVDLAE 266
flgL PRK12717
flagellar hook-associated protein 3;
8-144 1.22e-09

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 59.75  E-value: 1.22e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   8 NTMSLNAQRNLStsgsSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSEVGN 87
Cdd:PRK12717  10 ESSAANYQRNYS----NLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSIND 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 923066030  88 NLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTS 144
Cdd:PRK12717  86 TLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGSKSD 142
PRK12687 PRK12687
flagellin; Reviewed
 7-404 1.90e-08

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 55.44  E-value: 1.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   7 TNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISerftTQIRGLDVAIRNANDGISLAQVAEGSL---- 82
Cdd:PRK12687   6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIA----TTMRSDNEALSAVSDALGLGAATVDTMytal 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  83 -SEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLdgsftsqlfqvganagqaiains 161
Cdd:PRK12687  82 tSVVGDSKSGLTALKAKLVAAREPGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWL----------------------- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 162 vvnakadslgaasfangytgtalatdkatadttysglQISVTPPGGTATTITVNDFTvkagesitsatsaainnKLGETG 241
Cdd:PRK12687 139 -------------------------------------SVDSSPSSYNATKSVVSSFT-----------------RVGGTV 164

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 242 VMASVNAGVISLASVKDGQTFTLGVSAATPPTGATAATIAglgltetSTNGGTLTGTSASFVKdlnvttaegAQKALSIV 321
Cdd:PRK12687 165 AIKTIDVNIAKLALYDTNGSSTTGILDKTVTVGTATASVS-------SIDIHLLTDSATDLTK---------LDGYIGIV 228

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030 322 DKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTAMLAQANQVPQNVLS 401
Cdd:PRK12687 229 DQALGSVTQASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILS 308


                 ...
gi 923066030 402 LLQ 404
Cdd:PRK12687 309 LFK 311
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 5-144 4.81e-06

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 48.09  E-value: 4.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAG------LAISERFTTQIRGldvAIRNANDgiSLAQVa 78
Cdd:PRK07192   3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIAsarlleLSREQSNNSQYAD---NIANLSN--SLNNQ- 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 923066030  79 EGSLSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTS 144
Cdd:PRK07192  77 EGHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTASN 142
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 8-141 1.56e-03

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 40.96  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   8 NTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGSLSEVGN 87
Cdd:PRK08412   6 GSKYNQMNNYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSK 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 923066030  88 NLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQAdFNGTKLLDGS 141
Cdd:PRK08412  86 TMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLANTS-IGGEFLFSGS 138
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 5-220 1.95e-03

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 40.17  E-value: 1.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   5 INTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDD--AAGLAISERFTTQIRGLDVAIRNANDGISLAQVaeGSL 82
Cdd:PRK12718   3 LSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDplAAALAVNVSQTSSMNSNYDANRKQAEQALGAQT--NTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  83 SEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDG--------SFTSQLFQVGANAG 154
Cdd:PRK12718  81 QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGykgftqpySFDAATGKVTYNGD 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 923066030 155 ---QAIAINSVVNAKADSLGAASFANGYTGTALATDKATADTTYSGLQISVTPPGGTATTITVNDFTVK 220
Cdd:PRK12718 161 lgqRGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNAGTGQYSAVSFDGPRAGNYVGRDFRIE 229
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 2-387 5.17e-03

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 39.36  E-value: 5.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030    2 AQVINTNTMSLNAQRNLSTSGSSLATTIQRLSSGLRINSAKDDAAGLAISERFTTQIRGLDVAIRNANDGISLAQVAEGS 81
Cdd:COG3210   796 IDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAA 875

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030   82 LSEVGNNLQRIRELAVQSSNATNSASDRKALQAEVTQLVSEVDRVAKQADFNGTKLLDGSFTSQLFQVGANAGQAIAINS 161
Cdd:COG3210   876 SITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLS 955

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  162 VVNAKADSLGAASFANGYTGTALATDKATADTTYSGLQISVTPPGGTATTITVNDFTVKAGESITSATSAAINNKLGETG 241
Cdd:COG3210   956 AASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTG 1035

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923066030  242 VMASVNAGVISLASVKDGQTFTLGVSAATPPTGATAATIAGLGLTETSTNGGTLTGTSASFVKDLNVTTAEGAQKALSIV 321
Cdd:COG3210  1036 TAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGG 1115

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 923066030  322 DKALESVNSVRADLGAIQNRFTSVVANLQTSSENLSASRSRIRDTDFAKETAELTRTQILQQAGTA 387
Cdd:COG3210  1116 VTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAI 1181
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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