|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
36-336 |
1.03e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 96.72 E-value: 1.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 36 YSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLskiskdspaylqslmvqadlyqtqel 115
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIH-------------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 116 fevsrEKLLEakkLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAvniVERIGISYANDSNFENAIGYLK 195
Cdd:COG2956 66 -----QKLLE---RDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEA---LRLLAEIYEQEGDWEKAIEVLE 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 196 QIKTID-MSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKL 274
Cdd:COG2956 135 RLLKLGpENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 927264400 275 FLATAREALKLSENDEALGYLQQGNEIDPDDIEIvLEMSNLLVAKEDYEENIKLLNSYIENH 336
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
105-404 |
3.50e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.79 E-value: 3.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 105 VQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAvniverigisyand 184
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA-------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 185 snfenaigylkqiktidmssdvKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEG 264
Cdd:COG2956 79 ----------------------LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 265 LSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYW 344
Cdd:COG2956 137 LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 345 NLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFFREyGDRDNSYELLKKYVQLQ 404
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERK-EGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
178-419 |
1.95e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.48 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 178 GISYANDSNFENAIGYLKQIKTID-MSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEE 256
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDpETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 257 AYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENH 336
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 337 ELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFFREYGDRDNSYELLKKYVQLQPNDDEAAFMLDE 416
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
|
...
gi 927264400 417 YMD 419
Cdd:COG2956 255 LER 257
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
5-297 |
2.23e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.48 E-value: 2.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 5 QKALEFLEEGKIDEFNKQYNLALHHDSD--EMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNT 82
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPEtvEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 83 DEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIK 162
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 163 KgitnlsavniverigisyanDSNFENAIGYLKQIktidmssdvkfetaftYLQLKEYDEAIDLFEELRDSDPQYATLYP 242
Cdd:COG2956 173 L--------------------DPDCARALLLLAEL----------------YLEQGDYEEAIAALERALEQDPDYLPALP 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 927264400 243 YLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLfLATAREALKLSENDEALGYLQQ 297
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLL-LALADLLERKEGLEAALALLER 270
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
208-416 |
3.84e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 86.71 E-value: 3.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 208 FETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSE 287
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 288 NDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAK 367
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 927264400 368 PYFSDNASFLKQAALFFREYGDRDNSYELLKKYVQLQPNDDEAAFMLDE 416
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
25-230 |
1.59e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 85.17 E-value: 1.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 25 LALHHDSDEMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLM 104
Cdd:COG2956 69 LERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 105 VQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAvniVERIGISYAND 184
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA---LPRLAELYEKL 225
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 927264400 185 SNFENAIGYLKQIKTIDMSSDVKFETAFTYLQLKEYDEAIDLFEEL 230
Cdd:COG2956 226 GDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
214-414 |
1.91e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 81.58 E-value: 1.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 214 YLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREAL---KLSENDE 290
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALllqALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 291 ALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYF 370
Cdd:COG3914 97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 927264400 371 SDNASFLKQAALFFREYGDRDNSYELLKKYVQLQPNDDEAAFML 414
Cdd:COG3914 177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
42-414 |
8.77e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 8.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 42 LYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSRE 121
Cdd:TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAE 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 122 KLLEAKKLAPDEEVITFALAELYYTMGEYNKAIplylslikkgitnlsavniverigisyandSNFENAIgylkqiKTID 201
Cdd:TIGR02917 385 YLAKATELDPENAAARTQLGISKLSQGDPSEAI------------------------------ADLETAA------QLDP 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 202 MSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQ------------ 269
Cdd:TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPdffpaaanlari 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 270 ----------------------YNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIK 327
Cdd:TIGR02917 509 diqegnpddaiqrfekvltidpKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 328 LLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFFREYGDRDNSYELLKKYVQLQPND 407
Cdd:TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668
|
....*..
gi 927264400 408 DEAAFML 414
Cdd:TIGR02917 669 TEAQIGL 675
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
211-411 |
1.29e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.04 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 211 AFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDE 290
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 291 ALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNY---LAAK 367
Cdd:COG0457 95 ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLeklEAAA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 927264400 368 PYFSDNASFLKQAALFFREYGDRDNSYELLKKYVQLQPNDDEAA 411
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
244-373 |
3.28e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 3.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 244 LGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYE 323
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 927264400 324 ENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDN 373
Cdd:COG4783 90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
2-414 |
4.57e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.19 E-value: 4.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 2 SYSQKALEFLEEGKIDEFNKQYNLALHHDSD--EMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISE 79
Cdd:TIGR02917 24 ELIEAAKSYLQKNKYKAAIIQLKNALQKDPNdaEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 80 GNTDEALEQLSKISK-DSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYL 158
Cdd:TIGR02917 104 GKFQQVLDELPGKTLlDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALID 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 159 SLIKKGITNLSAVNIVERIGISyanDSNFENAIGYLKQIKTID-MSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQY 237
Cdd:TIGR02917 184 EVLTADPGNVDALLLKGDLLLS---LGNIELALAAYRKAIALRpNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 238 ATLYPYLGQALDAVNKQEEAYRVLQEGLSVD-QYNEKLFLATAREaLKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLL 316
Cdd:TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSApEYLPALLLAGASE-YQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 317 VAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFFREYGDRDNSYEL 396
Cdd:TIGR02917 340 LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIAD 419
|
410
....*....|....*...
gi 927264400 397 LKKYVQLQPNDDEAAFML 414
Cdd:TIGR02917 420 LETAAQLDPELGRADLLL 437
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
177-397 |
7.53e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.03 E-value: 7.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 177 IGISYANDSNFENAIGYLKQIKTID-MSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQE 255
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDpDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 256 EAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIEN 335
Cdd:COG0457 94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 927264400 336 HELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFFREYGDRDNSYELL 397
Cdd:COG0457 174 ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
205-336 |
8.82e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 8.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 205 DVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALK 284
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 927264400 285 LSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENH 336
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
234-411 |
1.18e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.56 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 234 DPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMS 313
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 314 NLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFFREYGDRDNS 393
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
170
....*....|....*...
gi 927264400 394 YELLKKYVQLQPNDDEAA 411
Cdd:COG0457 164 LELLEKLEAAALAALLAA 181
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
11-361 |
1.30e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 63.56 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 11 LEEGKIDEFNKQYN--LALHHDSDEMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQ 88
Cdd:TIGR02917 510 IQEGNPDDAIQRFEkvLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 89 LSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIplylSLIKKGITNL 168
Cdd:TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI----TSLKRALELK 665
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 169 SAVNIVERIGISYANDSN-FENAIGYLKQIKTIDMSSDVKFE-TAFTYLQLKEYDEAIDLFEELRDSDPQYATLYpYLGQ 246
Cdd:TIGR02917 666 PDNTEAQIGLAQLLLAAKrTESAKKIAKSLQKQHPKAALGFElEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHR 744
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 247 ALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATA----------------REALKLSEND-----------------EALG 293
Cdd:TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAelylaqkdydkaikhyQTVVKKAPDNavvlnnlawlylelkdpRALE 824
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 927264400 294 YLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHK 361
Cdd:TIGR02917 825 YAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
51-410 |
3.58e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.02 E-value: 3.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 51 AKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLA 130
Cdd:TIGR02917 144 AQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 131 PDEEVITFALAELYYTMGEYNKAIPLYLSLIKK-----------------------GITNLSAV--------NIVERIGI 179
Cdd:TIGR02917 224 PNNIAVLLALATILIEAGEFEEAEKHADALLKKapnsplahylkalvdfqkknyedARETLQDAlksapeylPALLLAGA 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 180 SYANDSNFENAIGYLKQIKTIDMSSD-VKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAY 258
Cdd:TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHqARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 259 RVLQEGLSVDQYNEKlfLATAREALKLSEND--EALGYLQQGNEIDPD--DIEIVLEMSNLLVAKEDyeENIKLLNSYIE 334
Cdd:TIGR02917 384 EYLAKATELDPENAA--ARTQLGISKLSQGDpsEAIADLETAAQLDPElgRADLLLILSYLRSGQFD--KALAAAKKLEK 459
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 927264400 335 NHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFFREYGDRDNSYELLKKYVQLQPNDDEA 410
Cdd:TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
51-407 |
5.95e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 61.25 E-value: 5.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 51 AKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLA 130
Cdd:TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 131 PDEEVITFALAELYYTMGEYNKAIPLYLSLIKkgiTNLSAVNIVERIGISYANDSNFENAIGYLKQIKTIDMSSDVKF-E 209
Cdd:TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAAD---AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALlL 640
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 210 TAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEglsVDQYNEKLFLATAREA-LKLSEN 288
Cdd:TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS---LQKQHPKAALGFELEGdLYLRQK 717
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 289 D--EALGYLQQGNEIDPDDiEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAA 366
Cdd:TIGR02917 718 DypAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 927264400 367 KPYFSDNASFLKQAALFFREyGDRDNSYELLKKYVQLQPND 407
Cdd:TIGR02917 797 VKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNI 836
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
25-157 |
7.31e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.78 E-value: 7.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 25 LALHHDSDEMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLM 104
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 927264400 105 VQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLY 157
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
85-416 |
7.67e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.87 E-value: 7.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 85 ALEQLSKISKDSPAyLQSLMVQAdlYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKG 164
Cdd:TIGR02917 453 AAKKLEKKQPDNAS-LHNLLGAI--YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 165 ITNLSAVNIVERIgisYANDSNFENAIGYLKQIKTIDMSS-DVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPY 243
Cdd:TIGR02917 530 PKNLRAILALAGL---YLRTGNEEEAVAWLEKAAELNPQEiEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 244 LGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYE 323
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 324 ENIKLLNSYIENHELDPQFYWNLAVSYdkldklkEAHKNYLAAKPYF------SDNASFLKQAALFFREYGDRDNSYELL 397
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLY-------LRQKDYPAAIQAYrkalkrAPSSQNAIKLHRALLASGNTAEAVKTL 759
|
330
....*....|....*....
gi 927264400 398 KKYVQLQPNDDEAAFMLDE 416
Cdd:TIGR02917 760 EAWLKTHPNDAVLRTALAE 778
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
5-163 |
1.61e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.59 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 5 QKALEFLEEGkidefnkqynLALHHDSDEMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDE 84
Cdd:COG2956 127 EKAIEVLERL----------LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 927264400 85 ALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVItFALAELYYTMGEYNKAIPLYLSLIKK 163
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LALADLLERKEGLEAALALLERQLRR 274
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
25-272 |
1.96e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 25 LALHHDSDEMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLM 104
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 105 VQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAVNiveRIGISYAND 184
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---NLGIALEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 185 SNFENAIGYLKQIKTIDMSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEG 264
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
....*...
gi 927264400 265 LSVDQYNE 272
Cdd:COG0457 238 LALYQYRA 245
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
5-133 |
2.42e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 2.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 5 QKALEFLEEGKIDEFNKQYNLALHHDSDEMV--YSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNT 82
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEafALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 927264400 83 DEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDE 133
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
36-163 |
3.57e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 3.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 36 YSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQEL 115
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 927264400 116 FEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKK 163
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
275-414 |
6.28e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 56.66 E-value: 6.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 275 FLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLD 354
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 355 KLKEAHKNYLAAKPYFSDNASFLKQAALFFREYGDRDNSYELLKKYVQLQPNDDEAAFML 414
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
211-310 |
7.11e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 7.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 211 AFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDE 290
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100
....*....|....*....|
gi 927264400 291 ALGYLQQGNEIDPDDIEIVL 310
Cdd:COG4235 104 AIAAWQKLLALLPADAPARL 123
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
50-255 |
8.03e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.61 E-value: 8.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 50 QAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKL 129
Cdd:COG3914 62 LAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 130 APDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAVNiveRIGISYANDSNFENAIGYLKQIKTIDMSS-DVKF 208
Cdd:COG3914 142 NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN---NLGNALQDLGRLEEAIAAYRRALELDPDNaDAHS 218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 927264400 209 ETAFTYLQL---KEYDEAIDLFEELRDSDPQYATLY-PYLGQALDAVNKQE 255
Cdd:COG3914 219 NLLFALRQAcdwEVYDRFEELLAALARGPSELSPFAlLYLPDDDPAELLAL 269
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
50-177 |
8.92e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 8.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 50 QAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKL 129
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 927264400 130 APDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAVNIVERI 177
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
3-169 |
1.63e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 50.38 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 3 YSQKALEFLEEGKIDEFNKQYN--LALHHDSDEMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEG 80
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRraLALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 81 NTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPL--YL 158
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFeeLL 240
|
170
....*....|.
gi 927264400 159 SLIKKGITNLS 169
Cdd:COG3914 241 AALARGPSELS 251
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
67-201 |
2.09e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.11 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 67 ELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYT 146
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 927264400 147 MGEYNKAIPLYLSLIKKGITNLSAVNiveRIGISYANDSNFENAIGYLKQIKTID 201
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYL---RLARAYRALGRPDEAIAALEKALELD 136
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
214-304 |
4.29e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 4.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 214 YLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRvLQEGLSVDQYNEKLFLATAREALKLSENDEALG 293
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 927264400 294 YLQQGNEIDPD 304
Cdd:COG3063 81 YLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
100-268 |
5.17e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 5.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 100 LQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKgitnlsavniverigi 179
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL---------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 180 sYANDSNFENAIGYLkqiktidmssdvkfetaftYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYR 259
Cdd:COG4783 68 -DPDEPEARLNLGLA-------------------LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
....*....
gi 927264400 260 VLQEGLSVD 268
Cdd:COG4783 128 ALEKALELD 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
97-326 |
6.58e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 47.31 E-value: 6.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 97 PAYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAVNiveR 176
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN---N 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 177 IGISYANDSNFENAIGYLKQIKTIDMS-SDVKFETAFTYLQLKEYDE-------AIDLfeelrdsDPQYATLYPYLGQAL 248
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEaieayerALEL-------DPDDADALYNLGIAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 927264400 249 DAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENI 326
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
139-288 |
6.95e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 47.18 E-value: 6.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 139 ALAELYYTMGEYNKAIPLYLSLIKKGITNlsAVNIVERIGISYANDSNFENAIGYLKQIKTID---MSSDVKFETAFTYL 215
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALTGIFAD--DPHILLGLAQALFELGRYAEALETLEKLIAKNpdfKSSDAHLLYARALE 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 927264400 216 QLKEYDEAIDLFEELRDSDPQYATLYpYLGQALDAVNKQEEAYRVLQEGLSVDQ----YNEKLFLATAREALKLSEN 288
Cdd:COG4700 172 ALGDLEAAEAELEALARRYSGPEARY-RYAKFLARQGRTAEAKELLEEILDEAKhmpkHYRRLNREWIREAKKLLKS 247
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
256-366 |
7.51e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 7.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 256 EAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIEN 335
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|.
gi 927264400 336 HELDPQFYWNLAVSYDKLDKLKEAHKNYLAA 366
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
98-309 |
1.12e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.68 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 98 AYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAVNiveRI 177
Cdd:COG3914 42 GLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALF---NL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 178 GISYANDSNFENAIGYLKQIKTIDMS-SDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEE 256
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 927264400 257 AYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIV 309
Cdd:COG3914 199 AIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
56-322 |
2.66e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 46.61 E-value: 2.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 56 EKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPA----------YLQSLMVQA----------DLYQTQEL 115
Cdd:PRK11447 171 QRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGrdaaaqlwygQIKDMPVSDasvaalqkylQVFSDGDS 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 116 FEVSREKLLEAKKLAPDeevitfalaelyytmgeynkaiPLY------LSLIKKGITNlSAVNIVERIGISYANDSNFEN 189
Cdd:PRK11447 251 VAAARSQLAEQQKQLAD----------------------PAFraraqgLAAVDSGQGG-KAIPELQQAVRANPKDSEALG 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 190 AIGYlkqiktidmssdvkfetafTYLQLKEYDEAIDLFEELRDSDPQyatlYPYLGQaldavnkqeeayrvLQEGLSVDQ 269
Cdd:PRK11447 308 ALGQ-------------------AYSQQGDRARAVAQFEKALALDPH----SSNRDK--------------WESLLKVNR 350
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 927264400 270 YneKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDY 322
Cdd:PRK11447 351 Y--WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
50-263 |
2.96e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 50 QAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKL 129
Cdd:TIGR02917 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 130 A---------------------------------PDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAVNIVER 176
Cdd:TIGR02917 733 ApssqnaiklhrallasgntaeavktleawlkthPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAW 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 177 IGISYANDSNFENAIGYLKQIKTIDMSSDVkfeTAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEE 256
Cdd:TIGR02917 813 LYLELKDPRALEYAERALKLAPNIPAILDT---LGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889
|
....*..
gi 927264400 257 AYRVLQE 263
Cdd:TIGR02917 890 ARKELDK 896
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
36-132 |
4.73e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 4.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 36 YSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQEL 115
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100
|
90
....*....|....*..
gi 927264400 116 FEVSREKLLEAKKLAPD 132
Cdd:COG4235 101 YAEAIAAWQKLLALLPA 117
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
48-109 |
5.04e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.03 E-value: 5.04e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 927264400 48 TNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLMVQADL 109
Cdd:pfam14559 4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
80-324 |
6.77e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 44.52 E-value: 6.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 80 GNTDEALEQLSKISKDSP-AYLQSLMVQADLYQTQELFEVSREKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYL 158
Cdd:COG3071 64 GDYERRDEYLAQALELAPeAELAVLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 159 SLIKKGITNLSAVNIVERIGISYANDSNFENAIG---YLKQI-KTIDMSSDVKFETAFTYLQLKEYDEAIDLFEELRDSD 234
Cdd:COG3071 144 ALRKHKALSAEEAQALERRAYLGLLRQAARDAEAlkaLWKALpRAERRDPELAAAYARALIALGDHDEAERLLREALKRQ 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 235 PQyATLYPYLGQAldAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPdDIEIVLEMSN 314
Cdd:COG3071 224 WD-PRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELAR 299
|
250
....*....|
gi 927264400 315 LLVAKEDYEE 324
Cdd:COG3071 300 LLEQLGDPEE 309
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
222-343 |
8.42e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 8.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 222 EAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEI 301
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 927264400 302 DPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFY 343
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
213-303 |
1.15e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.25 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 213 TYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEAL 292
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 927264400 293 GYLQQGNEIDP 303
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
282-366 |
1.89e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 282 ALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSyIENHELDPQFYWNLAVSYDKLDKLKEAHK 361
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKA-LKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*
gi 927264400 362 NYLAA 366
Cdd:COG3063 81 YLERA 85
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
300-414 |
1.93e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.69 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 300 EIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQ 379
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110
....*....|....*....|....*....|....*
gi 927264400 380 AALFFREYGDRDNSYELLKKYVQLQPNDDEAAFML 414
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNL 116
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
215-359 |
2.12e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.48 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 215 LQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLAtareALKLSENDEALGY 294
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNL----YNKLGDFEESLAL 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 927264400 295 LQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEA 359
Cdd:COG5010 77 LEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
253-405 |
6.14e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.33 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 253 KQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSENDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNSY 332
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 927264400 333 IENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFFREYGDRDNSYELLKKYVQLQP 405
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
120-268 |
7.21e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 120 REKLLEAKKLAPDEEVITFALAELYYTMGEYNKAIPLYLSLIKKGITNLSAVNIVERIGISYANDSNFENAIGYLKQIKT 199
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 200 ID-MSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQEEAYRVLQEGLSVD 268
Cdd:COG5010 83 LDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
305-414 |
7.33e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.79 E-value: 7.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 305 DIEIVLEMSNLLVAKEDYEENIKLLNSYIENHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDNASFLKQAALFF 384
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110
....*....|....*....|....*....|
gi 927264400 385 REYGDRDNSYELLKKYVQLQPNDDEAAFML 414
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
176-268 |
1.02e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 176 RIGISYANDSNFENAIGYLKQ-IKTIDMSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQYATLYPYLGQALDAVNKQ 254
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKaLRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90
....*....|....
gi 927264400 255 EEAYRVLQEGLSVD 268
Cdd:COG4235 102 AEAIAAWQKLLALL 115
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
25-111 |
3.36e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 25 LALHHDSDEMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALEQLSKISKDSPAYLQSLM 104
Cdd:COG4235 44 LRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
....*..
gi 927264400 105 VQADLYQ 111
Cdd:COG4235 124 LEASIAE 130
|
|
| ChAPs |
pfam09295 |
ChAPs (Chs5p-Arf1p-binding proteins); ChAPs (Chs5p-Arf1p-binding proteins) are required for ... |
209-331 |
4.00e-03 |
|
ChAPs (Chs5p-Arf1p-binding proteins); ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialized cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they form also interactions with each other.
Pssm-ID: 401292 Cd Length: 395 Bit Score: 39.25 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 209 ETAFTYLQL-KEYDEAIDLFEELRDSDPQYATLypyLGQALDAVNKQEEAYRVLQEGLSVDQYNEKLFLATAREALKLSE 287
Cdd:pfam09295 173 EGLLKYVRLtKRYDRALNLLEKLREEEPEVVIL---LARVYLLMDEEIDAVKLMNDALQENPMDAELLCLQAEFLLSKKR 249
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 927264400 288 NDEALGYLQQGNEIDPDDIEIVLEMSNLLVAKEDYEENIKLLNS 331
Cdd:pfam09295 250 YELALECAKRAVNSAPSEFKTWALLVKVYIKLGDWENALLTLNS 293
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
31-157 |
5.16e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 38.74 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 31 SDEMVYSLAEELYSYGFTNQAKELYEKLLKKFPDEDELRtdiadiLISEGNTDEALEQLSKISK------DSPAYLQSLm 104
Cdd:COG3071 192 DPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVR------LYGRLQGGDPAKQLKRAEKwlkkhpNDPDLLLAL- 264
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 927264400 105 vqADLYQTQELFEVSREKLLEAKKLAPDEEVItFALAELYYTMGEYNKAIPLY 157
Cdd:COG3071 265 --GRLCLRNQLWGKAREYLEAALALRPSAEAY-AELARLLEQLGDPEEAAEHY 314
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
179-284 |
5.82e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.51 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 179 ISYANDSNFENAIGYLKQIKTI----DMSSDVKFETAFTYLQLKEYDEAIDLFEELRDSDPQ---YATLYPYLGQALDAV 251
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRypnsPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|...
gi 927264400 252 NKQEEAYRVLQEglSVDQYNEKLFLATAREALK 284
Cdd:COG1729 81 GDYDKARATLEE--LIKKYPDSEAAKEARARLA 111
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
50-132 |
5.82e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 50 QAKELYEKLLKKFPDEDELRTDIADILISEGNTDEALeQLSKISKDSPAYLQSLMVQADLYQTQELFEVSREKLLEAKKL 129
Cdd:COG3063 10 EAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALEL 88
|
...
gi 927264400 130 APD 132
Cdd:COG3063 89 DPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
75-163 |
6.87e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 75 ILISEGNTDEALEQLSKISKDSPAYLQSLMVQADLYQTQELFEVSrEKLLEAKKLAPDEEVITFALAELYYTMGEYNKAI 154
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*....
gi 927264400 155 PLYLSLIKK 163
Cdd:COG3063 80 AYLERALEL 88
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
316-411 |
8.57e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927264400 316 LVAKEDYEENIKLLNSYIE---NHELDPQFYWNLAVSYDKLDKLKEAHKNYLAAKPYFSDN---ASFLKQAALFFREYGD 389
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82
|
90 100
....*....|....*....|..
gi 927264400 390 RDNSYELLKKYVQLQPNDDEAA 411
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAAK 104
|
|
| |
