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Conserved domains on  [gi|929043674|ref|WP_054066678|]
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2Fe-2S iron-sulfur cluster binding domain-containing protein [Comamonas kerstersii]

Protein Classification

similar to 2Fe-2S ferredoxin-5( domain architecture ID 10001920)

protein similar to 2Fe-2S ferredoxin-5

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
14-96 3.13e-23

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 84.90  E-value: 3.13e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674 14 IAPQGEQCDAWATDTLLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHYKiEWPGLTPEEKAEGCVLPCVAYPDGDVTL 93
Cdd:COG0633   6 FIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHR-EEDALSDEERAAGSRLACQARPTSDLVV 84


                ...
gi 929043674 94 QAP 96
Cdd:COG0633  85 ELP 87
 
Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
14-96 3.13e-23

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 84.90  E-value: 3.13e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674 14 IAPQGEQCDAWATDTLLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHYKiEWPGLTPEEKAEGCVLPCVAYPDGDVTL 93
Cdd:COG0633   6 FIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHR-EEDALSDEERAAGSRLACQARPTSDLVV 84


                ...
gi 929043674 94 QAP 96
Cdd:COG0633  85 ELP 87
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 11-94 1.93e-15

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 65.11  E-value: 1.93e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674 11 TLYIAPQGEQCDAWATDTLLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHyKIEWPGLTPEEKAEGCVLPCVAYPDGD 90
Cdd:cd00207   2 TINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVD-QSDPSLLDEEEAEGGYVLACQTRVTDG 80


                ....
gi 929043674 91 VTLQ 94
Cdd:cd00207  81 LVIE 84
PLN03136 PLN03136
Ferredoxin; Provisional
 13-94 9.81e-15

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 65.16  E-value: 9.81e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674  13 YIAPQGEQCDAWATDT-LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHyKIEWPGLTPEEKAEGCVLPCVAYPDGDV 91
Cdd:PLN03136  59 FITPEGEQEVECEEDVyVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSID-QSDQSFLDDEQISEGYVLTCVAYPTSDV 137


                 ...
gi 929043674  92 TLQ 94
Cdd:PLN03136 138 VIE 140
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 29-94 6.21e-12

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 56.31  E-value: 6.21e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 929043674  29 LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHyKIEWPGLTPEEKAEGCVLPCVAYPDGDVTLQ 94
Cdd:TIGR02008 25 ILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVD-QSDQSFLDDDQMEAGYVLTCVAYPTSDCTIE 89
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
12-87 7.82e-10

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 50.60  E-value: 7.82e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 929043674  12 LYIAPQGEQCDAWATDT-LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHykIEWPGLTPEEKAEG-CVLPCVAYP 87
Cdd:pfam00111  1 VTINGKGVTIEVPDGETtLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDQ--SDQSFLEDDELAAGyVVLACQTYP 76
 
Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
14-96 3.13e-23

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 84.90  E-value: 3.13e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674 14 IAPQGEQCDAWATDTLLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHYKiEWPGLTPEEKAEGCVLPCVAYPDGDVTL 93
Cdd:COG0633   6 FIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHR-EEDALSDEERAAGSRLACQARPTSDLVV 84


                ...
gi 929043674 94 QAP 96
Cdd:COG0633  85 ELP 87
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 11-94 1.93e-15

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 65.11  E-value: 1.93e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674 11 TLYIAPQGEQCDAWATDTLLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHyKIEWPGLTPEEKAEGCVLPCVAYPDGD 90
Cdd:cd00207   2 TINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVD-QSDPSLLDEEEAEGGYVLACQTRVTDG 80


                ....
gi 929043674 91 VTLQ 94
Cdd:cd00207  81 LVIE 84
PLN03136 PLN03136
Ferredoxin; Provisional
 13-94 9.81e-15

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 65.16  E-value: 9.81e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674  13 YIAPQGEQCDAWATDT-LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHyKIEWPGLTPEEKAEGCVLPCVAYPDGDV 91
Cdd:PLN03136  59 FITPEGEQEVECEEDVyVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSID-QSDQSFLDDEQISEGYVLTCVAYPTSDV 137


                 ...
gi 929043674  92 TLQ 94
Cdd:PLN03136 138 VIE 140
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 16-97 1.02e-14

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 67.59  E-value: 1.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674  16 PQGEQCDAWATDTLLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHY-KIEWPGLTPEEKAEGCVLPCVAYPDGDVTLQ 94
Cdd:PRK07609   9 PSGRQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQgPHQASALSGEERAAGEALTCCAKPLSDLVLE 88


                 ...
gi 929043674  95 APE 97
Cdd:PRK07609  89 ARE 91
PTZ00038 PTZ00038
ferredoxin; Provisional
 8-93 2.01e-12

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 59.85  E-value: 2.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674   8 PLY---TLyIAPQGE---QCDAwatDT-LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHYKiEWPGLTPEEKAEGCV 80
Cdd:PTZ00038  93 PLFyniTL-QTPDGEkviECDE---DEyILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNE-DQSYLDDEQLKKGYC 167

                         90
                 ....*....|...
gi 929043674  81 LPCVAYPDGDVTL 93
Cdd:PTZ00038 168 LLCTCYPKSDCTI 180
petF CHL00134
ferredoxin; Validated
 29-95 2.76e-12

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 57.42  E-value: 2.76e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929043674 29 LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHyKIEWPGLTPEEKAEGCVLPCVAYPDGDVTLQA 95
Cdd:CHL00134 27 ILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVD-QSDQSFLDDDQLEAGFVLTCVAYPTSDCTILT 92
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 29-94 6.21e-12

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 56.31  E-value: 6.21e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 929043674  29 LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHyKIEWPGLTPEEKAEGCVLPCVAYPDGDVTLQ 94
Cdd:TIGR02008 25 ILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVD-QSDQSFLDDDQMEAGYVLTCVAYPTSDCTIE 89
NqrF COG2871
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and ...
 10-98 1.51e-11

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 442118 [Multi-domain]  Cd Length: 396  Bit Score: 58.72  E-value: 1.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674  10 YTLYIAPQGEQCDAWATDTLLDAMEMGGLQWPSSC-RNGTCRTCLGQIKQGSVHY-KIEWPGLTPEEKAEGCVLPCVAYP 87
Cdd:COG2871   35 VKITINGDGKEIEVEEGQTLLDALLRQGIFLPSACgGGGTCGQCKVKVLEGGGDIlPTETFHLSDRERKEGYRLACQVKV 114

                         90
                 ....*....|.
gi 929043674  88 DGDVTLQAPES 98
Cdd:COG2871  115 KSDMEIEVPEE 125
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 8-98 7.51e-11

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 56.74  E-value: 7.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929043674   8 PLYTLYIAPQGEQCDAWATDTLLDAMEMGGLQWPSSCR-NGTCRTCLGQIKQGSVHY--KIEWPGLTPEEKAEGCVLPCV 84
Cdd:COG3894    2 PKVKVTFLPSGKRVEVEAGTTLLDAAREAGVDIDAPCGgRGTCGKCKVKVEEGEFSPvtEEERRLLSPEELAEGYRLACQ 81

                         90
                 ....*....|....
gi 929043674  85 AYPDGDVTLQAPES 98
Cdd:COG3894   82 ARVLGDLVVEVPPE 95
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
12-87 7.82e-10

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 50.60  E-value: 7.82e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 929043674  12 LYIAPQGEQCDAWATDT-LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHykIEWPGLTPEEKAEG-CVLPCVAYP 87
Cdd:pfam00111  1 VTINGKGVTIEVPDGETtLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDQ--SDQSFLEDDELAAGyVVLACQTYP 76
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 28-93 1.10e-07

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 47.78  E-value: 1.10e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929043674  28 TLLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGsvHYKIEWPG-LTPEEKAEGCVLPCVAYPDGDVTL 93
Cdd:PRK10684 267 TLLEALESNKVPVVAACRAGVCGCCKTKVVSG--EYTVSSTMtLTPAEIAQGYVLACSCHPQGDLVL 331
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
18-94 1.45e-06

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 44.33  E-value: 1.45e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 929043674  18 GEQCDAWATDT-LLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSVHYKIEwPGLTPEEKAEGCVLPCVAYPDGDVTLQ 94
Cdd:PRK05713   7 GERRWSVPAGSnLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALP-EALAAEKREQGWRLACQCRVVGDLRVE 83
antC PRK11872
anthranilate 1,2-dioxygenase electron transfer component AntC;
25-83 9.07e-04

anthranilate 1,2-dioxygenase electron transfer component AntC;


Pssm-ID: 183350 [Multi-domain]  Cd Length: 340  Bit Score: 36.65  E-value: 9.07e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 929043674  25 ATDTLLDAMEMGGLQWPSSCRNGTCRTCLGQIKQGSvhYKIEW---PGLTPEEKAEGCVLPC 83
Cdd:PRK11872  21 KDELLLDAALRNGINLPLDCREGVCGTCQGRCESGI--YSQDYvdeDALSERDLAQRKMLAC 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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