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Conserved domains on  [gi|936200472|ref|WP_054534610|]
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MULTISPECIES: F0F1 ATP synthase subunit B [Herpetosiphon]

Protein Classification

ATP synthase subunit B family protein( domain architecture ID 10794013)

ATP synthase subunit B family protein such as subunits b and b' from the F(o) complex in F-type ATP synthase (FoF1-ATPase) found in chloroplasts and in bacterial plasma membranes; the b subunits are part of the peripheral stalk that links the F(1) and F(o) complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14473 PRK14473
F0F1 ATP synthase subunit B; Provisional
 1-164 9.77e-71

F0F1 ATP synthase subunit B; Provisional


:

Pssm-ID: 172948 [Multi-domain]  Cd Length: 164  Bit Score: 210.55  E-value: 9.77e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   1 MDKLGVDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTII 80
Cdd:PRK14473   1 MEKLGINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  81 SQAQERARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:PRK14473  81 AQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDALIAESLAAL 160


                 ....
gi 936200472 161 GRLN 164
Cdd:PRK14473 161 GRRN 164
 
Name Accession Description Interval E-value
PRK14473 PRK14473
F0F1 ATP synthase subunit B; Provisional
 1-164 9.77e-71

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 172948 [Multi-domain]  Cd Length: 164  Bit Score: 210.55  E-value: 9.77e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   1 MDKLGVDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTII 80
Cdd:PRK14473   1 MEKLGINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  81 SQAQERARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:PRK14473  81 AQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDALIAESLAAL 160


                 ....
gi 936200472 161 GRLN 164
Cdd:PRK14473 161 GRRN 164
ATP-synt_Fo_b cd06503
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ...
 10-141 4.03e-30

F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.


Pssm-ID: 349951 [Multi-domain]  Cd Length: 132  Bit Score: 106.37  E-value: 4.03e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  10 LLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARA 89
Cdd:cd06503    1 TLIWQIINFLILLFILKKFLWKPILKALDEREEKIAESLEEAEKAKEEAEELLAEYEEKLAEARAEAQEIIEEARKEAEK 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 936200472  90 QEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLG 141
Cdd:cd06503   81 IKEEILAEAKEEAERILEQAKAEIEQEKEKALAELRKEVADLAVEAAEKILG 132
AtpF COG0711
FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ...
 9-160 1.28e-29

FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit b or b' is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440475 [Multi-domain]  Cd Length: 152  Bit Score: 105.64  E-value: 1.28e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   9 PLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERAR 88
Cdd:COG0711    1 GTLFWQLINFLILVLLLKKFAWPPILKALDERQEKIADGLAEAERAKEEAEAALAEYEEKLAEARAEAAEIIAEARKEAE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 936200472  89 AQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:COG0711   81 AIAEEAKAEAEAEAERIIAQAEAEIEQERAKALAELRAEVADLAVAIAEKILGKELDAAAQAALVDRFIAEL 152
ATP_synt_b TIGR01144
ATP synthase, F0 subunit b; This model describes the F1/F0 ATP synthase b subunit in bacteria ...
 14-160 3.17e-20

ATP synthase, F0 subunit b; This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 130214 [Multi-domain]  Cd Length: 147  Bit Score: 81.30  E-value: 3.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   14 QIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQEAE 93
Cdd:TIGR01144   1 QLISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEE 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 936200472   94 LLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:TIGR01144  81 AKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIERNIDKQAQKDLIDKLVAEL 147
ATP-synt_B pfam00430
ATP synthase B/B' CF(0); Part of the CF(0) (base unit) of the ATP synthase. The base unit is ...
 11-141 2.04e-16

ATP synthase B/B' CF(0); Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006


Pssm-ID: 425677 [Multi-domain]  Cd Length: 132  Bit Score: 71.19  E-value: 2.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   11 LLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQ 90
Cdd:pfam00430   2 LVTQLIAFLILVGVLIKFAWKPLGKVLDKRRELIADEIAEAEERRKDAAAALAEAEQQLKEARAEAQEIIENAKKRAEKL 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 936200472   91 EAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLG 141
Cdd:pfam00430  82 KEEIVAAAEAEAERIIEQAAAEIEQEKDRALAELRQQVVALAVQIAEKLLE 132
 
Name Accession Description Interval E-value
PRK14473 PRK14473
F0F1 ATP synthase subunit B; Provisional
 1-164 9.77e-71

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 172948 [Multi-domain]  Cd Length: 164  Bit Score: 210.55  E-value: 9.77e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   1 MDKLGVDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTII 80
Cdd:PRK14473   1 MEKLGINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  81 SQAQERARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:PRK14473  81 AQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDALIAESLAAL 160


                 ....
gi 936200472 161 GRLN 164
Cdd:PRK14473 161 GRRN 164
ATP-synt_Fo_b cd06503
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ...
 10-141 4.03e-30

F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.


Pssm-ID: 349951 [Multi-domain]  Cd Length: 132  Bit Score: 106.37  E-value: 4.03e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  10 LLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARA 89
Cdd:cd06503    1 TLIWQIINFLILLFILKKFLWKPILKALDEREEKIAESLEEAEKAKEEAEELLAEYEEKLAEARAEAQEIIEEARKEAEK 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 936200472  90 QEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLG 141
Cdd:cd06503   81 IKEEILAEAKEEAERILEQAKAEIEQEKEKALAELRKEVADLAVEAAEKILG 132
AtpF COG0711
FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ...
 9-160 1.28e-29

FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit b or b' is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440475 [Multi-domain]  Cd Length: 152  Bit Score: 105.64  E-value: 1.28e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   9 PLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERAR 88
Cdd:COG0711    1 GTLFWQLINFLILVLLLKKFAWPPILKALDERQEKIADGLAEAERAKEEAEAALAEYEEKLAEARAEAAEIIAEARKEAE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 936200472  89 AQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:COG0711   81 AIAEEAKAEAEAEAERIIAQAEAEIEQERAKALAELRAEVADLAVAIAEKILGKELDAAAQAALVDRFIAEL 152
PRK05759 PRK05759
F0F1 ATP synthase subunit B; Validated
 11-160 4.04e-28

F0F1 ATP synthase subunit B; Validated


Pssm-ID: 180240 [Multi-domain]  Cd Length: 156  Bit Score: 101.78  E-value: 4.04e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  11 LLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQ 90
Cdd:PRK05759   7 LIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQI 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  91 EAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:PRK05759  87 IEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAEL 156
ATP_synt_b TIGR01144
ATP synthase, F0 subunit b; This model describes the F1/F0 ATP synthase b subunit in bacteria ...
 14-160 3.17e-20

ATP synthase, F0 subunit b; This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 130214 [Multi-domain]  Cd Length: 147  Bit Score: 81.30  E-value: 3.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   14 QIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQEAE 93
Cdd:TIGR01144   1 QLISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEE 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 936200472   94 LLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:TIGR01144  81 AKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIERNIDKQAQKDLIDKLVAEL 147
PRK14471 PRK14471
F0F1 ATP synthase subunit B; Provisional
 1-147 1.19e-17

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 184695 [Multi-domain]  Cd Length: 164  Bit Score: 75.21  E-value: 1.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   1 MDKLGVDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTII 80
Cdd:PRK14471   1 MDLLTPDFGLFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAIL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 936200472  81 SQAQERARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTK 147
Cdd:PRK14471  81 KEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKVLRKELSNK 147
ATP-synt_B pfam00430
ATP synthase B/B' CF(0); Part of the CF(0) (base unit) of the ATP synthase. The base unit is ...
 11-141 2.04e-16

ATP synthase B/B' CF(0); Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006


Pssm-ID: 425677 [Multi-domain]  Cd Length: 132  Bit Score: 71.19  E-value: 2.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   11 LLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQ 90
Cdd:pfam00430   2 LVTQLIAFLILVGVLIKFAWKPLGKVLDKRRELIADEIAEAEERRKDAAAALAEAEQQLKEARAEAQEIIENAKKRAEKL 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 936200472   91 EAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLG 141
Cdd:pfam00430  82 KEEIVAAAEAEAERIIEQAAAEIEQEKDRALAELRQQVVALAVQIAEKLLE 132
PRK07353 PRK07353
F0F1 ATP synthase subunit B'; Validated
 8-143 4.20e-16

F0F1 ATP synthase subunit B'; Validated


Pssm-ID: 235999 [Multi-domain]  Cd Length: 140  Bit Score: 70.42  E-value: 4.20e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   8 LPLllsQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERA 87
Cdd:PRK07353   8 LPL---MAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEA 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 936200472  88 RAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRE 143
Cdd:PRK07353  85 DKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKLLAAK 140
PRK14474 PRK14474
F0F1 ATP synthase subunit B; Provisional
 13-163 3.95e-15

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 184696 [Multi-domain]  Cd Length: 250  Bit Score: 70.23  E-value: 3.95e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  13 SQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQEA 92
Cdd:PRK14474  10 AQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQ 89

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 936200472  93 ELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQLGRL 163
Cdd:PRK14474  90 HLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQIVGIFIARLEHL 160
PRK13460 PRK13460
F0F1 ATP synthase subunit B; Provisional
 4-164 3.10e-14

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 139585 [Multi-domain]  Cd Length: 173  Bit Score: 66.59  E-value: 3.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   4 LGVDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQA 83
Cdd:PRK13460  12 LDVNPGLVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  84 QERARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQLGRL 163
Cdd:PRK13460  92 KSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIETELAKLGKL 171


                 .
gi 936200472 164 N 164
Cdd:PRK13460 172 S 172
atpG CHL00118
ATP synthase CF0 B' subunit; Validated
 8-134 4.39e-14

ATP synthase CF0 B' subunit; Validated


Pssm-ID: 214369 [Multi-domain]  Cd Length: 156  Bit Score: 65.78  E-value: 4.39e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   8 LPLLLSQivnFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERA 87
Cdd:CHL00118  25 LPLMALQ---FLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEA 101

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 936200472  88 RAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTE 134
Cdd:CHL00118 102 KEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQ 148
PRK13453 PRK13453
F0F1 ATP synthase subunit B; Provisional
 5-161 1.58e-13

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 184060  Cd Length: 173  Bit Score: 64.55  E-value: 1.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   5 GVDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQ 84
Cdd:PRK13453  15 GVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAK 94

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 936200472  85 ERARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQLG 161
Cdd:PRK13453  95 VQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKALVDKYLKEAG 171
PRK13461 PRK13461
F0F1 ATP synthase subunit B; Provisional
 6-161 3.19e-13

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 184064 [Multi-domain]  Cd Length: 159  Bit Score: 63.53  E-value: 3.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   6 VDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQE 85
Cdd:PRK13461   3 INIPTIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKS 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 936200472  86 RARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQLG 161
Cdd:PRK13461  83 KAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEESIDESEHRRLIKDFISKVG 158
PRK06231 PRK06231
F0F1 ATP synthase subunit B; Validated
 12-160 6.93e-10

F0F1 ATP synthase subunit B; Validated


Pssm-ID: 180481 [Multi-domain]  Cd Length: 205  Bit Score: 55.23  E-value: 6.93e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  12 LSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQE 91
Cdd:PRK06231  52 IAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLK 131

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 936200472  92 AELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:PRK06231 132 SELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDREDDDKLVDEFIREL 200
PRK08476 PRK08476
F0F1 ATP synthase subunit B'; Validated
 4-128 1.25e-09

F0F1 ATP synthase subunit B'; Validated


Pssm-ID: 181442 [Multi-domain]  Cd Length: 141  Bit Score: 53.54  E-value: 1.25e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   4 LGVDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQA 83
Cdd:PRK08476   3 LDVNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKA 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 936200472  84 QERARA-QEAELLVVARNNAAKIEEEARNKAEQdRQQMLRGLQGQL 128
Cdd:PRK08476  83 IAKAKEeAEKKIEAKKAELESKYEAFAKQLANQ-KQELKEQLLSQM 127
PRK07352 PRK07352
F0F1 ATP synthase subunit B; Validated
 5-162 1.74e-09

F0F1 ATP synthase subunit B; Validated


Pssm-ID: 180941 [Multi-domain]  Cd Length: 174  Bit Score: 53.81  E-value: 1.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   5 GVDLPLLLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQ 84
Cdd:PRK07352  16 GLNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK 95

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 936200472  85 ERARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQLGR 162
Cdd:PRK07352  96 ARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLPGRLDEDAQQRLIDRSIANLGG 173
PRK14472 PRK14472
F0F1 ATP synthase subunit B; Provisional
 16-160 1.87e-09

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 172947 [Multi-domain]  Cd Length: 175  Bit Score: 53.66  E-value: 1.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  16 VNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQEAELL 95
Cdd:PRK14472  26 VTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEIT 105

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 936200472  96 VVARNNAAKIEEEARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQL 160
Cdd:PRK14472 106 EKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRTSLDADKQKKVVDSMIQDL 170
PRK13428 PRK13428
F0F1 ATP synthase subunit delta; Provisional
 14-128 2.18e-09

F0F1 ATP synthase subunit delta; Provisional


Pssm-ID: 184048 [Multi-domain]  Cd Length: 445  Bit Score: 55.12  E-value: 2.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  14 QIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQEAE 93
Cdd:PRK13428   7 QLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQ 86

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 936200472  94 LLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQL 128
Cdd:PRK13428  87 LRAQADAEAERIKVQGARQVQLLRAQLTRQLRLEL 121
PRK09173 PRK09173
F0F1 ATP synthase subunit B; Validated
 21-164 2.83e-09

F0F1 ATP synthase subunit B; Validated


Pssm-ID: 169691 [Multi-domain]  Cd Length: 159  Bit Score: 52.82  E-value: 2.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  21 LAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARA------QEAEL 94
Cdd:PRK09173  15 LALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEAltaeakRKTEE 94

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 936200472  95 LVVARNnaaKIEEEARNKAEQDRQQMLRGLQGQLAslvTETASNVLGRELQTKGHDELINKSIDQL-GRLN 164
Cdd:PRK09173  95 YVARRN---KLAEQKIAQAETDAINAVRSSAVDLA---IAAAEKLLAEKVDAKAASELFKDALAQVkTRLN 159
PRK14475 PRK14475
F0F1 ATP synthase subunit B; Provisional
 29-161 7.37e-05

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 184697 [Multi-domain]  Cd Length: 167  Bit Score: 41.08  E-value: 7.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  29 LYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQEAELlvvarnnAAKIEEE 108
Cdd:PRK14475  31 LPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEA-------KEKLEEQ 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472 109 ARNKAE-------QDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQLG 161
Cdd:PRK14475 104 IKRRAEmaerkiaQAEAQAAADVKAAAVDLAAQAAETVLAARLAGAKSDPLVDAAIGQMG 163
PRK09174 PRK09174
F0F1 ATP synthase subunit B;
11-139 1.13e-04

F0F1 ATP synthase subunit B;


Pssm-ID: 169692 [Multi-domain]  Cd Length: 204  Bit Score: 40.55  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  11 LLSQIVNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQ 90
Cdd:PRK09174  56 LLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAK 135

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 936200472  91 eaellvvarnnaakiEEEARNKAEQDRQQMLRGLQGQLASLVTETASNV 139
Cdd:PRK09174 136 ---------------AEAERAAIEASLEKKLKEAEARIAAIKAKAMADV 169
NtpE COG1390
Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]; Archaeal ...
 50-159 2.05e-04

Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 is part of the Pathway/BioSystem: A/V-type ATP synthase


Pssm-ID: 441000 [Multi-domain]  Cd Length: 196  Bit Score: 39.93  E-value: 2.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  50 NAEKVKQQ-LARVDADYDAKLQEARREGQTIISQAQERARAQEAELLVVARNNAAKIEEEARNKAEQDRQQMLRGLQGQL 128
Cdd:COG1390    3 SLEKIIEEiLEEAEAEAEEILEEAEEEAEKILEEAEEEAEEIKEEILEKAEREAEREKRRIISSAELEARKELLEAKEEL 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 936200472 129 ASLVTETASNVLGRELQTKGHDELINKSIDQ 159
Cdd:COG1390   83 IEEVFEEALEKLKNLPKDPEYKELLKKLLKE 113
NtpH COG2811
Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]; Archaeal ...
 39-122 2.07e-04

Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase subunit H is part of the Pathway/BioSystem: A/V-type ATP synthase


Pssm-ID: 442060 [Multi-domain]  Cd Length: 108  Bit Score: 38.74  E-value: 2.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  39 ARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQEAELLVVARNNAAKIEEEARNKAEQDRQ 118
Cdd:COG2811    2 DRPEVLKEIKEAEEEADEIIEEAKEEREERIAEAREEAEEIIEQAEEEAEEEAQERLEEAREEAEAEAEEIIEEGEKEAE 81


                 ....
gi 936200472 119 QMLR 122
Cdd:COG2811   82 ALKK 85
PRK13455 PRK13455
F0F1 ATP synthase subunit B; Provisional
 21-162 2.96e-04

F0F1 ATP synthase subunit B; Provisional


Pssm-ID: 184062 [Multi-domain]  Cd Length: 184  Bit Score: 39.40  E-value: 2.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  21 LAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQERARAQEAELLV---- 96
Cdd:PRK13455  40 IGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKAdlea 119

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 936200472  97 -VARNNAAKIEEEARNKAEQdrqqmLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQLGR 162
Cdd:PRK13455 120 sIARRLAAAEDQIASAEAAA-----VKAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEVEA 181
PRK08475 PRK08475
F0F1 ATP synthase subunit B; Validated
 16-115 4.62e-04

F0F1 ATP synthase subunit B; Validated


Pssm-ID: 236272 [Multi-domain]  Cd Length: 167  Bit Score: 38.84  E-value: 4.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472  16 VNFSLLAILLNMFLYKPILNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQTIISQAQeraraQEAELL 95
Cdd:PRK08475  30 INFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAK-----KEAYIL 104

                         90       100
                 ....*....|....*....|
gi 936200472  96 vvarnnAAKIEEEARNKAEQ 115
Cdd:PRK08475 105 ------TQKIEKQTKDDIEN 118
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 34-161 5.30e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 36.35  E-value: 5.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472    34 LNALQARSERIRESLDNAEKVKQQLARVDADYDAKLQEARREGQtiiSQAQERARAQEAELLVVARNNAAKIEE------ 107
Cdd:pfam12128  634 LEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERK---DSANERLNSLEAQLKQLDKKHQAWLEEqkeqkr 710

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 936200472   108 EARNKAEQDRQQMLRGLQGQLASLVTETASNVLGRELQTKGHDELINKSIDQLG 161
Cdd:pfam12128  711 EARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLG 764
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 38-127 6.85e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 36.25  E-value: 6.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 936200472   38 QARSERIRESLDNAEKVKQQlarvDADYDAKLQEARREGQTIISQaQERARAQEAELLVVARNNaakiEEEARNKAEQDR 117
Cdd:pfam17380 388 QQKNERVRQELEAARKVKIL----EEERQRKIQQQKVEMEQIRAE-QEEARQREVRRLEEERAR----EMERVRLEEQER 458

                          90
                  ....*....|
gi 936200472  118 QQMLRGLQGQ 127
Cdd:pfam17380 459 QQQVERLRQQ 468
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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