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Conserved domains on  [gi|937117468|ref|WP_054554812|]
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MULTISPECIES: F0F1 ATP synthase subunit epsilon [Pseudoalteromonas]

Protein Classification

FoF1 ATP synthase subunit epsilon( domain architecture ID 11479057)

FoF1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Gene Ontology:  GO:0045261|GO:0046933|GO:0005524|GO:0005886
SCOP:  3000182|3000785

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 3-138 7.28e-59

F0F1 ATP synthase subunit epsilon; Validated


:

Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 178.42  E-value: 7.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   3 AMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILA 82
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 937117468  83 DTAVRGEDLDEQAAEKAKRDAEEQMANtSTAELDYQQAAVQLAEAIAQLRVIQQLR 138
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALEN-KHDDVDYARAQAALARAIARLRVAEKLR 135
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 3-138 7.28e-59

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 178.42  E-value: 7.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   3 AMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILA 82
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 937117468  83 DTAVRGEDLDEQAAEKAKRDAEEQMANtSTAELDYQQAAVQLAEAIAQLRVIQQLR 138
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALEN-KHDDVDYARAQAALARAIARLRVAEKLR 135
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 6-137 1.54e-48

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 152.27  E-value: 1.54e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   6 VHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADTA 85
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 937117468  86 VRGEDLDEQAAEKAKRDAEEQMANTStAELDYQQAAVQLAEAIAQLRVIQQL 137
Cdd:COG0355   81 ERAEDIDVERAEEAKERAEERLEEAK-DDIDYARAEAALARALARLRAAEKL 131
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 5-135 3.95e-46

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 145.86  E-value: 3.95e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468    5 TVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADT 84
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 937117468   85 AVRGEDLDEQAAEKAKRDAEEQMANTSTaELDYQQAAVQLAEAIAQLRVIQ 135
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAED-DKDLAEALLKLKKARAQLEALE 130
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 7-129 2.20e-36

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 121.08  E-value: 2.20e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   7 HLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADTAV 86
Cdd:cd12152    2 KLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEAE 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 937117468  87 RGEDLDEQAAEKAKRDAEEQMANTSTAElDYQQAAVQLAEAIA 129
Cdd:cd12152   82 RPEDIDVERAEEALERAEERLAQAKDER-EKARAEAALERALA 123
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 6-85 7.37e-35

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 115.61  E-value: 7.37e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468    6 VHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADTA 85
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADSA 80
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 3-138 7.28e-59

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 178.42  E-value: 7.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   3 AMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILA 82
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 937117468  83 DTAVRGEDLDEQAAEKAKRDAEEQMANtSTAELDYQQAAVQLAEAIAQLRVIQQLR 138
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALEN-KHDDVDYARAQAALARAIARLRVAEKLR 135
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 6-137 1.54e-48

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 152.27  E-value: 1.54e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   6 VHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADTA 85
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 937117468  86 VRGEDLDEQAAEKAKRDAEEQMANTStAELDYQQAAVQLAEAIAQLRVIQQL 137
Cdd:COG0355   81 ERAEDIDVERAEEAKERAEERLEEAK-DDIDYARAEAALARALARLRAAEKL 131
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 5-135 3.95e-46

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 145.86  E-value: 3.95e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468    5 TVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADT 84
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 937117468   85 AVRGEDLDEQAAEKAKRDAEEQMANTSTaELDYQQAAVQLAEAIAQLRVIQ 135
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAED-DKDLAEALLKLKKARAQLEALE 130
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 7-129 2.20e-36

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 121.08  E-value: 2.20e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   7 HLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADTAV 86
Cdd:cd12152    2 KLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEAE 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 937117468  87 RGEDLDEQAAEKAKRDAEEQMANTSTAElDYQQAAVQLAEAIA 129
Cdd:cd12152   82 RPEDIDVERAEEALERAEERLAQAKDER-EKARAEAALERALA 123
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 6-85 7.37e-35

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 115.61  E-value: 7.37e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468    6 VHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADTA 85
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADSA 80
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 3-139 8.06e-27

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 97.33  E-value: 8.06e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   3 AMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRlVKQFGHEDVMYIAGGTLEVQPDRITILA 82
Cdd:PRK13446   2 AKKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELT-YKKGGKTHYVAVNGGFAEVSNNKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 937117468  83 DTAVRGEDLDEQAAEKAKRDAEEQMAnTSTAELDYQQAAVQLAEAIAQLRVIQQLRK 139
Cdd:PRK13446  81 ETAERAEEIDVERARAALERAEQRLK-KLTPEDDSARAEAALERALIRLQVAGKATR 136
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 4-139 2.49e-25

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 93.52  E-value: 2.49e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   4 MTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQfGHEDVMYIAGGTLEVQPDRITILAD 83
Cdd:PRK14735   1 MPIHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKN-GVRTPFAISGGFMEVLPHRVTILAD 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 937117468  84 TAVRGEDLDEQAAEKAKRDAEEQMANTSTAElDYQQAAVQLAEAIAQLRViQQLRK 139
Cdd:PRK14735  80 TAERADEIDEARAEQARAEAEQRRRERQSEQ-DLALAEAKLRRAMVRLRV-AQLHK 133
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 1-134 1.38e-24

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 91.73  E-value: 1.38e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   1 MAAMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRlVKQFGHEDVMYIAGGTLEVQPDRITI 80
Cdd:PRK13452   1 MTKKYLKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVN-VRKDQHTDVLYVSGGIVEVTPTRVTI 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 937117468  81 LADTAVRGEDLDEQAAEKAKRDAEEQMANTSTAELDYQQAAVQLAEAIAQLRVI 134
Cdd:PRK13452  80 MVDDMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLKAL 133
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 3-133 4.82e-22

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 84.81  E-value: 4.82e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   3 AMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILA 82
Cdd:PRK13450   1 ANNIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILC 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 937117468  83 DTAVRGEDLDEQAAEKAKRDAEEQMANTStaELDYQQAAVQLAEAIAQLRV 133
Cdd:PRK13450  81 DASEWPEEIDIKRAENAKKRAEERLRKKD--EIDVKRAELALFRAIARIKL 129
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 5-116 5.91e-20

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 79.43  E-value: 5.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   5 TVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQfGHEDVMYIAGGTLEVQPDRITILADT 84
Cdd:PRK13448   3 TFHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAG-GNQQKIVVLGGLAEVSEKGLTVLADV 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 937117468  85 AVRGEDLDEQAAEKAKRDAEEQMANTSTAELD 116
Cdd:PRK13448  82 ATSVADLDLAQFAATIAEMEAQLAGKVGDELD 113
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 5-132 2.56e-19

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 77.91  E-value: 2.56e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   5 TVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADT 84
Cdd:PRK14736   3 TFHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPTSVTVLAER 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 937117468  85 AVRGEDLDEQAAEKAKRDAEeqMANTSTAELDYQQaavQLAEAIAQLR 132
Cdd:PRK14736  83 AAPVEELTPEMIDREIEAVE--MERDATQDLDKRE---ALNAQIVQMQ 125
atpC PRK13449
ATP synthase F1 subunit epsilon;
3-86 8.52e-16

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 67.49  E-value: 8.52e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   3 AMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGH-EDVMYIAGGTLEVQPDRITIL 81
Cdd:PRK13449   1 MAKLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAaPEVFHVQGGFAEVNEKGLTIL 80


                 ....*
gi 937117468  82 ADTAV 86
Cdd:PRK13449  81 AEHAV 85
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 1-124 1.77e-14

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 65.28  E-value: 1.77e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   1 MAAMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQfGHEDVMYIAGGTLEVQPDRITI 80
Cdd:PRK13444   1 MMAKKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKG-EKLKRISVEGGFCEVKDNQISI 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 937117468  81 LADTAVRGEDLDEQAAEKAKRDAeEQMANTSTAELDYQQAAVQL 124
Cdd:PRK13444  80 LTDHGALKEDIDHEHEKKLLAEA-EKLPPSDSKNLLLQKTKTRI 122
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-85 3.13e-14

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 63.50  E-value: 3.13e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   1 MAAMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITI 80
Cdd:PRK13442   1 MAGATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLTV 80


                 ....*
gi 937117468  81 LADTA 85
Cdd:PRK13442  81 LAERA 85
atpE CHL00063
ATP synthase CF1 epsilon subunit
 4-139 9.80e-14

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 63.35  E-value: 9.80e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   4 MTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRlVKQFGHEDVMYIAGGTLEVQPDRITILAD 83
Cdd:CHL00063   1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLR-IRLNDQWLTMALMGGFARIGNNEITILVN 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 937117468  84 TAVRGEDLDEQAAEKAKRDAEEQMANtstAELDYQQ--AAVQLAEAIAQLRVIQQLRK 139
Cdd:CHL00063  80 DAEKGSDIDPQEAQQTLEIAEANLEK---AEGKKQKieANLALKRARARVEAINAISS 134
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 3-129 2.33e-11

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 57.24  E-value: 2.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   3 AMTVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMyIAGGTLEVQPDRITILA 82
Cdd:PRK13443   2 AGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYA-VTGGFAEINATSISVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 937117468  83 DTA-----VRGEDLDEQAAEkAKRDAEEQMANTSTAELDyqQAAVQLAEAIA 129
Cdd:PRK13443  81 EKAipveeLTGAVLDEFIAE-ARELASVALPENEPGDVD--DAAKTLADMLA 129
ATP-synt_DE pfam00401
ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). ...
 89-133 7.54e-10

ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 459802  Cd Length: 45  Bit Score: 50.84  E-value: 7.54e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 937117468   89 EDLDEQAAEKAKRDAEEQMANTSTAELDYQQAAVQLAEAIAQLRV 133
Cdd:pfam00401   1 EDIDVARAEEAKERAEERLAQAKQDDIDYARAQAALARALARLQA 45
atpC PRK00539
F0F1 ATP synthase subunit epsilon; Validated
 6-115 6.03e-08

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 179059 [Multi-domain]  Cd Length: 133  Bit Score: 48.35  E-value: 6.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   6 VHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQPDRITILADTA 85
Cdd:PRK00539   4 LRFLVLSPSGIKLDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAKIFTENF 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 937117468  86 VRGEDLDEQAAEKAKRDAEEQMANTSTAEL 115
Cdd:PRK00539  84 VFADELDYDETLKRKKELERKIKHTKDTKL 113
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 5-93 3.33e-05

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 40.63  E-value: 3.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468   5 TVHLDVVSAEESLFSGLVESIQVSGSEGDLGVNYGHAPLLTALKPGMVRLVKQFGH--EDVMYIAGGTLEVQPDRITILA 82
Cdd:PRK01474   4 TILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHksENTYLISGGVTEVTGNYINIAT 83

                         90
                 ....*....|.
gi 937117468  83 DTAVRGEDLDE 93
Cdd:PRK01474  84 ETAINVTNLSE 94
PRK13447 PRK13447
F0F1 ATP synthase subunit epsilon; Provisional
 32-124 1.09e-03

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184057 [Multi-domain]  Cd Length: 136  Bit Score: 36.91  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937117468  32 GDLGVNYGHAPLLTALKPGMVRLVKQFGHEDVMYIAGGTLEVQP-DRITILADTAVRGEDLDEQAAE----KAKRDAEEQ 106
Cdd:PRK13447  28 GGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGgARVEIACREAVLGEDLARLEAVvravRAAQLDAAR 107

                         90
                 ....*....|....*...
gi 937117468 107 MANTSTAELdYQQAAVQL 124
Cdd:PRK13447 108 RARVEQTRL-HAQAVRQL 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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