|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
24-519 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 722.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 24 LTSDDLVSLPTKRLPFSYARRTGVL-LSKDQDNWTVYYRGELDVDALLEVRRIAGHGFSLEQLPDDKFELLLEASYQRDS 102
Cdd:COG2804 68 LDELEIDPEVLELLPEELARRHRVLpLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSES 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 103 SeTQQMMEDIGNEvdlfsLADELPQTEDLLAGDDDAPIIKLINAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVL 182
Cdd:COG2804 148 S-IEELLEELAED-----LTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVL 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 183 KPNRKLASLLVSRIKVMAKLDIAEKRIPQDGRISLRIAGRAVDVRVSTMPSSFGERVVLRLLDKNNARLNLEDLGMTERN 262
Cdd:COG2804 222 RLPKSLAPALVSRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQ 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 263 RELFADLISKPHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQ 342
Cdd:COG2804 302 LERLRRLIRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQ 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 343 DPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSLLGVLSQRLVRTLCNSCKEGHI 422
Cdd:COG2804 382 DPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYE 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 423 ADERECQLLGVNPAE--PPTIYRAVGCEECNFNGYRGRTGIHELLVVDETIREMIHSGKGEQSVEKYIRKH-SPSIRQDG 499
Cdd:COG2804 462 PDPEELERLGLPPEElaPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEgMRTLREDG 541
|
490 500
....*....|....*....|
gi 937129378 500 CNRVLAGRTTLEEVLRVTRE 519
Cdd:COG2804 542 LEKVLQGITTLEEVLRVTGE 561
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
34-517 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 706.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 34 TKRLPFSYARRTGVL-LSKDQDNWTVYYRGELDVDALLEVRRIAGHGFSLEQLPDDKFELLLEASYQRDSSETQQMMEDI 112
Cdd:TIGR02533 1 VRRLPIGFAKQSRVLpLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVEEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 113 GNEVDLFSLADELPQTEDLLAGDDDAPIIKLINAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVLKPNRKLASLL 192
Cdd:TIGR02533 81 EGEDDLSALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 193 VSRIKVMAKLDIAEKRIPQDGRISLRIAGRAVDVRVSTMPSSFGERVVLRLLDKNNARLNLEDLGMTERNRELFADLISK 272
Cdd:TIGR02533 161 VSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 273 PHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEI 352
Cdd:TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 353 RDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSLLGVLSQRLVRTLCNSCKEGHIADERECQLLG 432
Cdd:TIGR02533 321 RDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 433 VNPAEPPTIYRAVGCEECNFNGYRGRTGIHELLVVDETIREMIHSGKGEQSVEKYIRKHS-PSIRQDGCNRVLAGRTTLE 511
Cdd:TIGR02533 401 ISPEGPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGmRTLRDDGLRKVLAGITTIE 480
|
....*.
gi 937129378 512 EVLRVT 517
Cdd:TIGR02533 481 EVLRVT 486
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
145-413 |
1.48e-141 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 408.60 E-value: 1.48e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 145 NAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVLKPNRKLASLLVSRIKVMAKLDIAEKRIPQDGRISLRIAGRAV 224
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 225 DVRVSTMPSSFGERVVLRLLDKNNARLNLEDLGMTERNRELFADLISKPHGIILVTGPTGSGKSTTLYAGMSQINSRDRN 304
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 305 ILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAI 384
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*....
gi 937129378 385 TRMEDMGVEPFLLSSSLLGVLSQRLVRTL 413
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
123-517 |
3.58e-140 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 412.40 E-value: 3.58e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 123 DELPQTEDLLAGDDDAPIIKLINAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVLKPNRKLASLLVSRIKVMAKL 202
Cdd:PRK10436 67 QRTQQTLPVADQEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 203 DIAEKRIPQDGRISLRIAGRAVDVRVSTMPSSFGERVVLRLLDKNNARLNLEDLGMTERNRELFADLISKPHGIILVTGP 282
Cdd:PRK10436 147 DIAERRLPQDGQFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGP 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 283 TGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIGV 362
Cdd:PRK10436 227 TGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAI 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 363 QASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSLLGVLSQRLVRTLCNSCKeghiaderecqllgvNPAEPPTI- 441
Cdd:PRK10436 307 KAAQTGHLVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCR---------------QQASEPIHl 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 442 -----------YRAVGCEECnFNGYRGRTGIHELLVVDETIREMIHSGKGEQSVEKYIRKHS-PSIRQDGCNRVLAGRTT 509
Cdd:PRK10436 372 ppniwpgplphWQAVGCEHC-YHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGmTTLFENGLLAVEQGLTT 450
|
....*...
gi 937129378 510 LEEVLRVT 517
Cdd:PRK10436 451 LEELYRVL 458
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
145-394 |
2.53e-90 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 277.41 E-value: 2.53e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 145 NAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVLKPNRKLASLLVSRIKVMAKLDIAEKRIPQDGRISLRIAGRAV 224
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 225 DVRVSTMPSSFG-ERVVLRLL-DKNNARLNLedlgMTERNRELFADLISKPHGIILVTGPTGSGKSTTLYAgMSQINSRD 302
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLyQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYS-LARKLALN 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 303 RNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAG 382
Cdd:NF041000 156 KQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250
....*....|..
gi 937129378 383 AITRMEDMGVEP 394
Cdd:NF041000 236 VIYRLLELGISK 247
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
264-411 |
2.89e-82 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 252.79 E-value: 2.89e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 264 ELFADLISKPHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQD 343
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937129378 344 PDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSLLGVLSQRLVR 411
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVG 148
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
273-352 |
1.05e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.66 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 273 PHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTF------ARGLRAILRQ-DPD 345
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrLRLALALARKlKPD 80
|
....*..
gi 937129378 346 VVMVGEI 352
Cdd:smart00382 81 VLILDEI 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
24-519 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 722.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 24 LTSDDLVSLPTKRLPFSYARRTGVL-LSKDQDNWTVYYRGELDVDALLEVRRIAGHGFSLEQLPDDKFELLLEASYQRDS 102
Cdd:COG2804 68 LDELEIDPEVLELLPEELARRHRVLpLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSES 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 103 SeTQQMMEDIGNEvdlfsLADELPQTEDLLAGDDDAPIIKLINAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVL 182
Cdd:COG2804 148 S-IEELLEELAED-----LTSEEEDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVL 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 183 KPNRKLASLLVSRIKVMAKLDIAEKRIPQDGRISLRIAGRAVDVRVSTMPSSFGERVVLRLLDKNNARLNLEDLGMTERN 262
Cdd:COG2804 222 RLPKSLAPALVSRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQ 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 263 RELFADLISKPHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQ 342
Cdd:COG2804 302 LERLRRLIRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQ 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 343 DPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSLLGVLSQRLVRTLCNSCKEGHI 422
Cdd:COG2804 382 DPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYE 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 423 ADERECQLLGVNPAE--PPTIYRAVGCEECNFNGYRGRTGIHELLVVDETIREMIHSGKGEQSVEKYIRKH-SPSIRQDG 499
Cdd:COG2804 462 PDPEELERLGLPPEElaPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEgMRTLREDG 541
|
490 500
....*....|....*....|
gi 937129378 500 CNRVLAGRTTLEEVLRVTRE 519
Cdd:COG2804 542 LEKVLQGITTLEEVLRVTGE 561
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
34-517 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 706.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 34 TKRLPFSYARRTGVL-LSKDQDNWTVYYRGELDVDALLEVRRIAGHGFSLEQLPDDKFELLLEASYQRDSSETQQMMEDI 112
Cdd:TIGR02533 1 VRRLPIGFAKQSRVLpLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVEEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 113 GNEVDLFSLADELPQTEDLLAGDDDAPIIKLINAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVLKPNRKLASLL 192
Cdd:TIGR02533 81 EGEDDLSALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 193 VSRIKVMAKLDIAEKRIPQDGRISLRIAGRAVDVRVSTMPSSFGERVVLRLLDKNNARLNLEDLGMTERNRELFADLISK 272
Cdd:TIGR02533 161 VSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 273 PHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEI 352
Cdd:TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 353 RDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSLLGVLSQRLVRTLCNSCKEGHIADERECQLLG 432
Cdd:TIGR02533 321 RDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 433 VNPAEPPTIYRAVGCEECNFNGYRGRTGIHELLVVDETIREMIHSGKGEQSVEKYIRKHS-PSIRQDGCNRVLAGRTTLE 511
Cdd:TIGR02533 401 ISPEGPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGmRTLRDDGLRKVLAGITTIE 480
|
....*.
gi 937129378 512 EVLRVT 517
Cdd:TIGR02533 481 EVLRVT 486
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
86-519 |
5.34e-179 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 514.95 E-value: 5.34e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 86 PDDKFELLLEASYQRDSSETQQM-MEDIGN--EVDLFSLADELPQTEDLLAGDDDAPIIKLINAMLSEAIKEGASDIHIE 162
Cdd:TIGR02538 124 EEDKLSALIEKYYGGSDSLAKELgDEDIGDleELDVDAIDDEGPDDIEQDAVDDDAPIVKFVNKILLDAIRKGASDIHFE 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 163 TFEQELVIRFRVDGVLKEVLKPNRKLASLLVSRIKVMAKLDIAEKRIPQDGRISLRIA-GRAVDVRVSTMPSSFGERVVL 241
Cdd:TIGR02538 204 PYEKSYRVRFRIDGILHEVAQPPLALANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSkSKAIDFRVSTLPTLFGEKVVL 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 242 RLLDKNNARLNLEDLGMTERNRELFADLISKPHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQ 321
Cdd:TIGR02538 284 RILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQ 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 322 TQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSL 401
Cdd:TIGR02538 364 VNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSV 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 402 LGVLSQRLVRTLCNSCKEGHIADERECQLLGVNPAEPP--TIYRAVGCEECNFNGYRGRTGIHELLVVDETIREMIHSGK 479
Cdd:TIGR02538 444 NLIMAQRLARRLCSHCKAPEEVPAEALLELGFTQEDLAdlKLYGPVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGG 523
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 937129378 480 GEQSVEKYIRKHSPS-IRQDGCNRVLAGRTTLEEVLRVTRE 519
Cdd:TIGR02538 524 NALQIAELAQKEGMRtLRRSGLLKVKQGVTSLEEVLRVTVD 564
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
145-413 |
1.48e-141 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 408.60 E-value: 1.48e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 145 NAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVLKPNRKLASLLVSRIKVMAKLDIAEKRIPQDGRISLRIAGRAV 224
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 225 DVRVSTMPSSFGERVVLRLLDKNNARLNLEDLGMTERNRELFADLISKPHGIILVTGPTGSGKSTTLYAGMSQINSRDRN 304
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 305 ILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAI 384
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*....
gi 937129378 385 TRMEDMGVEPFLLSSSLLGVLSQRLVRTL 413
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
123-517 |
3.58e-140 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 412.40 E-value: 3.58e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 123 DELPQTEDLLAGDDDAPIIKLINAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVLKPNRKLASLLVSRIKVMAKL 202
Cdd:PRK10436 67 QRTQQTLPVADQEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 203 DIAEKRIPQDGRISLRIAGRAVDVRVSTMPSSFGERVVLRLLDKNNARLNLEDLGMTERNRELFADLISKPHGIILVTGP 282
Cdd:PRK10436 147 DIAERRLPQDGQFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGP 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 283 TGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIGV 362
Cdd:PRK10436 227 TGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAI 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 363 QASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSLLGVLSQRLVRTLCNSCKeghiaderecqllgvNPAEPPTI- 441
Cdd:PRK10436 307 KAAQTGHLVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCR---------------QQASEPIHl 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 442 -----------YRAVGCEECnFNGYRGRTGIHELLVVDETIREMIHSGKGEQSVEKYIRKHS-PSIRQDGCNRVLAGRTT 509
Cdd:PRK10436 372 ppniwpgplphWQAVGCEHC-YHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGmTTLFENGLLAVEQGLTT 450
|
....*...
gi 937129378 510 LEEVLRVT 517
Cdd:PRK10436 451 LEELYRVL 458
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
145-394 |
2.53e-90 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 277.41 E-value: 2.53e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 145 NAMLSEAIKEGASDIHIETFEQELVIRFRVDGVLKEVLKPNRKLASLLVSRIKVMAKLDIAEKRIPQDGRISLRIAGRAV 224
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 225 DVRVSTMPSSFG-ERVVLRLL-DKNNARLNLedlgMTERNRELFADLISKPHGIILVTGPTGSGKSTTLYAgMSQINSRD 302
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLyQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYS-LARKLALN 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 303 RNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAG 382
Cdd:NF041000 156 KQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250
....*....|..
gi 937129378 383 AITRMEDMGVEP 394
Cdd:NF041000 236 VIYRLLELGISK 247
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
264-411 |
2.89e-82 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 252.79 E-value: 2.89e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 264 ELFADLISKPHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTFARGLRAILRQD 343
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937129378 344 PDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDMGVEPFLLSSSLLGVLSQRLVR 411
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVG 148
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
144-482 |
8.68e-66 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 216.50 E-value: 8.68e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 144 INAMLSEAIKEGASDIHIETfeqELVIRFRVDGVLK----EVLKPN--RKLASLLVS---RIKVMAKLDIaekripqDGR 214
Cdd:COG2805 5 LDELLKLAVEQGASDLHLTV---GSPPMLRIDGELVplddPPLTPEdlEALLKEILTeeqRERLEEEGEL-------DFS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 215 ISLRIAGRavdVRVSTMPSSFGERVVLRLLdkNNARLNLEDLGMTErnreLFADLISKPHGIILVTGPTGSGKSTTLYAG 294
Cdd:COG2805 75 YSLPGLGR---FRVNIFRQRGGVAAVLRLI--PSEIPTLEELGLPP----VLKELAELPRGLVLVTGPTGSGKSTTLAAM 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 295 MSQIN-SRDRNILTVEDPIEYEIPG----IGQTQVNTKVDmTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGH 369
Cdd:COG2805 146 IDYINeTRAKHIITIEDPIEFVHKHkkslINQREVGRDTP-SFANALRAALREDPDVILVGEMRDLETIEAALTAAETGH 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 370 LVMSTLHTNTAAGAITRMEDMgvepFllsssllGVLSQRLVRT-LCNSCKeGHIadereCQLLgvnpaepptIYRAVGce 448
Cdd:COG2805 225 LVFATLHTNSAAQTIDRIIDV----F-------PPEEQAQIRSqLAESLR-GVI-----SQRL---------LPRADG-- 276
|
330 340 350
....*....|....*....|....*....|....
gi 937129378 449 ecnfngyRGRTGIHELLVVDETIREMIHSGKGEQ 482
Cdd:COG2805 277 -------GGRVAAREILVNTPAVRNLIREGKTHQ 303
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
144-514 |
1.88e-55 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 189.45 E-value: 1.88e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 144 INAMLSEAIKEGASDIHIETfeqELVIRFRVDGVLK----EVLKPnRKLASLLVSrIKVMAKLDIAEKRIPQDGRISLRI 219
Cdd:TIGR01420 2 LEEILREAVKLGASDIHLTA---GAPPAMRIDGDLVriefEPLTP-EDTQKLARE-ILSEKQREEFEENGELDFSFSLPG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 220 AGRavdVRVSTMPSSFGERVVLRLLDKNnaRLNLEDLGMTErnreLFADLISKPHGIILVTGPTGSGKSTTLYAGMSQIN 299
Cdd:TIGR01420 77 VGR---FRVNAFYQRGGVALVLRLIPSK--IPTFEELGLPP----VLRELAERPRGLILVTGPTGSGKSTTLASMIDYIN 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 300 SR-DRNILTVEDPIEYEIPG----IGQTQVNtkVD-MTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMS 373
Cdd:TIGR01420 148 KNkAYHIITIEDPIEYVHTNkrslINQREVG--EDtLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFG 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 374 TLHTNTAAGAITRMEDMGVEpfllsssllgvLSQRLVRTLCNSCKEGHIAderecQLLgvnpaepptIYRAVGceecnfn 453
Cdd:TIGR01420 226 TLHTNSAAQTIERIIDVFPA-----------EEQEQIRTQLAESLVAIIS-----QRL---------LPKADG------- 273
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937129378 454 gyRGRTGIHELLVVDETIREMIHSGKGEQ---SVEKYIRKHSPSIRQDGCNRVLAGRTTLEEVL 514
Cdd:TIGR01420 274 --GGRVLAVEILINTPAVRNLIREGKTHQiksLIQTGQQLGMQTFDQHLAQLYKKGLITLEDAL 335
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
251-479 |
5.66e-53 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 178.89 E-value: 5.66e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 251 LNLEDLGMTErnreLFADLISKPHGIILVTGPTGSGKSTTLYAGMSQINS-RDRNILTVEDPIEYEIPG----IGQTQVN 325
Cdd:cd01131 2 PTFEELGLPP----VLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINEtRSKHIITIEDPIEFVHKHkkslINQREVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 326 TKVDmTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDMgvepfllssslLGVL 405
Cdd:cd01131 78 RDTE-SFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV-----------FPPE 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937129378 406 SQRLVRTLCNSCKEGHIADerecQLLgvnpaepPTIyravgceecnfnGYRGRTGIHELLVVDETIREMIHSGK 479
Cdd:cd01131 146 QQEQVRIQLASSLRGVISQ----RLL-------PKK------------DGGGRVAAFEILINTPAIRNLIREGK 196
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
266-424 |
3.30e-45 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 156.40 E-value: 3.30e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 266 FADLISKPhGIILVTGPTGSGKSTTLYAGMSQINSrDRNILTVEDPIEYEIP---GIGQTQVNTKVdmTFARGLRAILRQ 342
Cdd:cd19477 3 IKDGIAIG-KNVIVCGGTGSGKTTYIKSILEFIPK-EERIISIEDTEEIVFKhhkNYTQLFFGGNI--TSADCLKSCLRQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 343 DPDVVMVGEIRDlETAQIGVQASLTGH-LVMSTLHTNTAAGAITRMEDMG------------VEPFLLSSSLLGVLSQRL 409
Cdd:cd19477 79 RPDRIILGELRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SssnsaarnikfeSLIEGFKDLIDGIVHINH 157
|
170
....*....|....*
gi 937129378 410 VRTlcnsCKEGHIAD 424
Cdd:cd19477 158 HKQ----CDEFYIKH 168
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
275-390 |
7.33e-34 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 126.34 E-value: 7.33e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 275 GIILVTGPTGSGKSTTLYAGMSQINSRD---RNILTVEDPIEY-------EIPGIGQTQVNTKVdMTFARGLRAILRQDP 344
Cdd:cd19516 12 GLVYVAGATGSGKSTLLAAIYRYILENDppdRKIITYEDPIEFvydgiksKHSIIVQSQIPRHF-KSFAKAVREALRRKP 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 937129378 345 DVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRMEDM 390
Cdd:cd19516 91 SLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISL 136
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
252-387 |
1.61e-32 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 127.91 E-value: 1.61e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 252 NLEDLGMTErnreLFADLISKPHGIILVTGPTGSGKSTTLyAGMsqINSRDRN----ILTVEDPIEY------EIpgIGQ 321
Cdd:COG5008 105 TLDELGLPP----VLKDLIMEKRGLVLFVGATGSGKSTTL-AAM--IDHRNENssghILTIEDPIEFvhkhkkSI--VTQ 175
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937129378 322 TQVNtkVD-MTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITRM 387
Cdd:COG5008 176 REVG--VDtESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRI 240
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
253-386 |
1.34e-24 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 105.27 E-value: 1.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 253 LEDLGMTErnrELFADLISKpHGIILVTGPTGSGKSTTLYAGMSQI--NSRDRNILTVEDPIEYEIPGIG------QTQV 324
Cdd:TIGR02525 132 LKQMGIEP---DLFNSLLPA-AGLGLICGETGSGKSTLAASIYQHCgeTYPDRKIVTYEDPIEYILGSPDdllppaQSQI 207
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937129378 325 NTKVDmTFARGLRAILRQDPDVVMVGEIRDLETAQIGVQASLTGHLVMSTLHTNTAAGAITR 386
Cdd:TIGR02525 208 GRDVD-SFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISR 268
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
277-393 |
3.26e-19 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 85.28 E-value: 3.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 277 ILVTGPTGSGKSTTLYAGMSQINSRDRnILTVED------------PIEYEIPGIGQTQVntkvdmTFARGLRAILRQDP 344
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSFIPPDER-IVTIEDtrelqlphpnvvHLLTRPGGGEKGEV------TMADLLKAALRMRP 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 937129378 345 DVVMVGEIRDLETAQIgVQASLTGHL-VMSTLHTNTAAGAITRMEDMGVE 393
Cdd:cd01130 88 DRIIVGEVRGGEAYDM-LQAMNTGHPgSITTIHANSAEDAIDRLATLVLE 136
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
274-394 |
3.58e-18 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 87.06 E-value: 3.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 274 HGIILVTGPTGSGKSTTLYAGMSQINSRDRnILTVEDPIEYEIPGIGQTQVNTKVDMTFARG-------LRAILRQDPDV 346
Cdd:COG0630 290 GKSVLVAGGTASGKTTLLNALLSFIPPDAK-IVTIEDTRELNLPHENWISLVTRESFGGEEGdvtmfdlLKAALRQRPDY 368
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 937129378 347 VMVGEIRDLEtAQIGVQASLTGHLVMSTLHTNTAAGAITRM--EDMGVEP 394
Cdd:COG0630 369 IVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLtsPPINVPR 417
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
277-391 |
1.26e-13 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 72.51 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 277 ILVTGPTGSGKSTTLYAGMSQINSRDRnILTVEDpiEYEIpGIGQTQVntkVDM-------------TFARGLRAILRQD 343
Cdd:COG4962 185 ILVSGGTGSGKTTLLNALSGFIPPDER-IVTIED--AAEL-QLQHPHV---VRLetrppnvegagevTLRDLVRNALRMR 257
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 937129378 344 PDVVMVGEIRDLETAQIgVQASLTGHL-VMSTLHTNTAAGAITRMEDMG 391
Cdd:COG4962 258 PDRIIVGEVRGAEALDM-LQAMNTGHDgSMSTLHANSARDALARLETLA 305
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
258-387 |
7.21e-11 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 63.61 E-value: 7.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 258 MTERNRELFADLISKpHGIILVTGPTGSGKSTTLYA---GMSQINSRDRnILTVEDPIEYEIPGIGQTQVNTKVDMTFAR 334
Cdd:PRK13894 133 MTAAQREAIIAAVRA-HRNILVIGGTGSGKTTLVNAiinEMVIQDPTER-VFIIEDTGEIQCAAENYVQYHTSIDVNMTA 210
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 937129378 335 GLRAILRQDPDVVMVGEIRDLETAQIgVQASLTGHL-VMSTLHTNTAAGAITRM 387
Cdd:PRK13894 211 LLKTTLRMRPDRILVGEVRGPEALDL-LMAWNTGHEgGAATLHANNAKAGLDRL 263
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
258-393 |
3.67e-09 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 58.27 E-value: 3.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 258 MTERNRELFADLISKPHGIIlVTGPTGSGKSTTLYAGMSQI--NSRDRNILTVEDPIEYEIPGIGQTQVNT--KVDMtfA 333
Cdd:PRK13833 129 MTEAQASVIRSAIDSRLNIV-ISGGTGSGKTTLANAVIAEIvaSAPEDRLVILEDTAEIQCAAENAVALHTsdTVDM--A 205
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937129378 334 RGLRAILRQDPDVVMVGEIRDlETAQIGVQASLTGHL-VMSTLHTNTAAGAITRMEDMGVE 393
Cdd:PRK13833 206 RLLKSTMRLRPDRIIVGEVRD-GAALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQLTAE 265
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
277-376 |
4.57e-06 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 48.74 E-value: 4.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 277 ILVTGPTGSGKSTTLYAGMSQINSRDRnILTVEDPIEYEIPGIGQTQVNTKVD------MTFARGLRAILRQDPDVVMVG 350
Cdd:PRK13851 165 MLLCGPTGSGKTTMSKTLISAIPPQER-LITIEDTLELVIPHENHVRLLYSKNgaglgaVTAEHLLQASLRMRPDRILLG 243
|
90 100
....*....|....*....|....*..
gi 937129378 351 EIRDlETAQIGVQASLTGHL-VMSTLH 376
Cdd:PRK13851 244 EMRD-DAAWAYLSEVVSGHPgSISTIH 269
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
277-390 |
1.03e-05 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 47.44 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 277 ILVTGPTGSGKSTTLYAGMSQINSRDRnILTVEDPIEYEIP-------------GIGQTQVNTKvDMtfargLRAILRQD 343
Cdd:PRK13900 163 IIISGGTSTGKTTFTNAALREIPAIER-LITVEDAREIVLSnhpnrvhllaskgGQGRAKVTTQ-DL-----IEACLRLR 235
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 937129378 344 PDVVMVGEIRDLETAQIgVQASLTGHL-VMSTLHTNTAAGAITRMEDM 390
Cdd:PRK13900 236 PDRIIVGELRGAEAFSF-LRAINTGHPgSISTLHADSPAMAIEQLKLM 282
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
273-352 |
1.05e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.66 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 273 PHGIILVTGPTGSGKSTTLYAGMSQINSRDRNILTVEDPIEYEIPGIGQTQVNTKVDMTF------ARGLRAILRQ-DPD 345
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrLRLALALARKlKPD 80
|
....*..
gi 937129378 346 VVMVGEI 352
Cdd:smart00382 81 VLILDEI 87
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
250-291 |
2.35e-03 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 39.47 E-value: 2.35e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 937129378 250 RLNLEDLGMTERNRELFADL--ISKPHGIILVTGPTGSGKSTTL 291
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLsfTLAAGEALVLTGPNGSGKTTLL 45
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
274-324 |
3.31e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 38.63 E-value: 3.31e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 937129378 274 HGIILVTGPTGSGKSTTLYA------GMSQINSRDRNILTVEDPIEYEIPGIGQTQV 324
Cdd:pfam13476 18 KGLTLITGPNGSGKTTILDAiklalyGKTSRLKRKSGGGFVKGDIRIGLEGKGKAYV 74
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
272-293 |
3.88e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 35.65 E-value: 3.88e-03
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
115-291 |
3.99e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 39.96 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 115 EVDLFslADELPQTEDLLAGdddapiiklinAMLSEAIKEGAsdihieTFEQELVIRFRVDGVLKEVLKpnrklasllvs 194
Cdd:COG0507 15 RIGIF--ADFIARDDPIRAA-----------ALLSRAAGEGH------TFPLEDLAAARLLGVAEDIEA----------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937129378 195 rikVMAKLdIAEKRIPQDGRISL--------RIAGRAVDVRVSTMPSSFGERVVLRLLDKNNARLNLEdlgmternRELF 266
Cdd:COG0507 65 ---ALAAL-VESGPLVLDGRRYLtrlleaeqRLARRLRRLARPALDEADVEAALAALEPRAGITLSDE--------QREA 132
|
170 180
....*....|....*....|....*
gi 937129378 267 ADLISKPHGIILVTGPTGSGKSTTL 291
Cdd:COG0507 133 VALALTTRRVSVLTGGAGTGKTTTL 157
|
|
| |
