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Conserved domains on  [gi|939386375|ref|WP_054928545|]
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MULTISPECIES: YncE family protein [Burkholderia]

Protein Classification

YncE family protein( domain architecture ID 11465355)

YncE family protein contains repeats resembling the NHL (NCL-1, HT2A and LIN-41) and YVTN-type repeats, similar to DNA-binding beta-propeller protein YncE and Bacillus subtilis uncharacterized protein YwhL

CATH:  2.130.10.10
PubMed:  22120742|10607670
SCOP:  4002745

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
50-268 3.35e-14

DNA-binding beta-propeller fold protein YncE [General function prediction only];


:

Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 71.65  E-value: 3.35e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  50 LPSPPADTLTLLDASTFPPKVALQVDVENGIQGPPQAVAITPDAKLALVGAPTRYDTAAKQLVF-----DTFLQVVNLDS 124
Cdd:COG3391   20 ALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYvansgSGRVSVIDLAT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 125 APPaITRIELGTHPQGIAIDRSGRLALVANVDGRvSILRIDGTQVTLEGNLKIGKKrLAGISFTHDGRHALVSLRDEQGI 204
Cdd:COG3391  100 GKV-VATIPVGGGPRGLAVDPDGGRLYVADSGNG-RVSVIDTATGKVVATIPVGAG-PHGIAVDPDGKRLYVANSGSNTV 176

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939386375 205 A----VLNVDDGKVTDsgtRLSTGVAPYTIDVSSDNRWAVVSNvglaglpGYTGTLAGDADSVALIDV 268
Cdd:COG3391  177 SvivsVIDTATGKVVA---TIPVGGGPVGVAVSPDGRRLYVAN-------RGSNTSNGGSNTVSVIDL 234
COG4946 super family cl27624
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 179-376 2.79e-04

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


The actual alignment was detected with superfamily member COG4946:

Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 43.10  E-value: 2.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  179 KKRLAGISFTHDGRHALVSLRDEqgIAVLNVDDGKVTdsgtRL--STGVAPYTIDVSSDNRWAV-VSNV-GLAGLpgYTG 254
Cdd:COG4946   301 SGYLTSFALSPDGKRVAFEARGE--VFTVPAEKGPTR----NLtnTPGVRERLPAWSPDGKSIAyFSDAsGEYEL--YIA 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  255 TLAGDADSVALIDVSrvpfrtvqyltvPSLPEGVAISPNGKWIAVqamdgsnltADNPGRhkigkVLLFEIRDGRAVKVN 334
Cdd:COG4946   373 PADGSGEPKQLTLGD------------LGRVFNPVWSPDGKKIAF---------TDNRGR-----LWVVDLASGKVRKVD 426

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 939386375  335 EVPGGEAAQGIVFTADSRHVIVQF---NVERQLALYAVEGGKLRD 376
Cdd:COG4946   427 TDGYGDGISDLAWSPDSKWLAYSKpgpNQLSQIFLYDVETGKTVQ 471
 
Name Accession Description Interval E-value
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
50-268 3.35e-14

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 71.65  E-value: 3.35e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  50 LPSPPADTLTLLDASTFPPKVALQVDVENGIQGPPQAVAITPDAKLALVGAPTRYDTAAKQLVF-----DTFLQVVNLDS 124
Cdd:COG3391   20 ALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYvansgSGRVSVIDLAT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 125 APPaITRIELGTHPQGIAIDRSGRLALVANVDGRvSILRIDGTQVTLEGNLKIGKKrLAGISFTHDGRHALVSLRDEQGI 204
Cdd:COG3391  100 GKV-VATIPVGGGPRGLAVDPDGGRLYVADSGNG-RVSVIDTATGKVVATIPVGAG-PHGIAVDPDGKRLYVANSGSNTV 176

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939386375 205 A----VLNVDDGKVTDsgtRLSTGVAPYTIDVSSDNRWAVVSNvglaglpGYTGTLAGDADSVALIDV 268
Cdd:COG3391  177 SvivsVIDTATGKVVA---TIPVGGGPVGVAVSPDGRRLYVAN-------RGSNTSNGGSNTVSVIDL 234
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 150-297 4.82e-08

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 54.28  E-value: 4.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  150 ALVAN-VDGRVSIlrIDGTQVTLEGNLKIGKkRLAGISFTHDGRHALVSLRDEQGIAVLNVDDGKVTDSgtrLSTGVAPY 228
Cdd:TIGR03866  13 AYVSNeKDNTISV--IDTATLKVTRTFPVGQ-RPRGITFSKDGKLLYVCASDSDTIQVIDPATGEVLHT---LPSGPDPE 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939386375  229 TIDVSSDNRWAVVSNvglaglpgytgtlaGDADSVALIDVSRVpfRTVQYLTVPSLPEGVAISPNGKWI 297
Cdd:TIGR03866  87 QFALHPNGKILYIAN--------------EDDALVTVIDIETR--KVLAQIDVGVEPEGMAVSPDGKIV 139
Cytochrom_D1 pfam02239
Cytochrome D1 heme domain; Cytochrome cd1 (nitrite reductase) catalyzes the conversion of ...
 156-380 7.73e-06

Cytochrome D1 heme domain; Cytochrome cd1 (nitrite reductase) catalyzes the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 heme binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 heme iron of the active site in the oxidized state.


Pssm-ID: 366994 [Multi-domain]  Cd Length: 368  Bit Score: 47.46  E-value: 7.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  156 DGRVSIlrIDGTQVTLEGNLKIGKKRLAGISFTHDGRHALVSLRDeqgiAVLNVDDGKVTDSGTRLSTGVAPYTIDVSSD 235
Cdd:pfam02239  14 AGSVAL--LDGDRKEILARVDTGYALHISRMFSSDGRYVYVIGRD----GGLTKIDLWNQEIVAEVRQGGNARSVATSYD 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  236 NRWAVVSNVglagLPGytGTLAGDADSVALIDVsrVPFRTVQYLTVPSLPEGVAISPNGKWIAVQAMDgsnltadnpgrh 315
Cdd:pfam02239  88 GRYVIVGNY----WPG--QYVIMDGRTLELVKV--IPARGMTGDSPESRVAAIVASPGRPEFVVNLKD------------ 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939386375  316 kIGKVLLFEIRDGRAVKVNEVPGGEAAQGIVFTADSRHVIVQFNVERQLALYAVEGGKLR---DTGKR 380
Cdd:pfam02239 148 -TGEIWLVDYSDGKNLKTTFIEAAKFLHDGGFDPDGRYFMAAANASDKIAVWDTKRGKLVallDYGKT 214
8prop_heme_binding_protein cd20718
eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; ...
 32-356 9.24e-06

eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; Members here contain an 8-bladed beta-propeller heme-binding domain in cytochrome cd1 (nitrite reductase) and similar proteins including NirN and NirF. During denitrification, nitrate (Nar), nitrite (Nir), nitric oxide (Nor), and nitrous oxide (Nos) reductases catalyze the reaction cascade of NO(3-)-> NO(2-)-> NO -> N2O -> N2. The integral membrane proteins NorC, NorB, and NosR form the core assembly platform that binds the nitrate reductase NarGHI and the periplasmic nitrite reductase NirS via its maturation factor NirF. NirN and NirF form a stable complex with the nitrite reductase NirS during enzyme maturation. NirF is involved in heme d1 insertion.


Pssm-ID: 467720 [Multi-domain]  Cd Length: 380  Bit Score: 47.33  E-value: 9.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  32 IVSGNDGKYQRVEGRDTYLpsppadtlTLLDASTFPPKVALQVDVENgiqgppQAVAITPDAKLALVGAptrYDTAakql 111
Cdd:cd20718   64 VVFSPDGRFAYVISRDGWL--------TKIDLYTLRPVASIRIGVNS------RGIALSDDGKYVIAGN---YEPG---- 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 112 vfdtflQVVNLDS---APpaITRIEL-GTHPQGIAIDRSGRLA-------LVANVDGRVSILRIDGTQvtLEGNLKI--- 177
Cdd:cd20718  123 ------HVVILDAdtlEP--LKVIPTtGVNDDGIIESRVGAILetppgpyFLVALKDAGSVWVIDYSD--PDGNKVTdig 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 178 -GKKRLAGISFTHDGRHALVSLRDEQGIAVLNVDDGKVTdsgTRLSTGVAPYTidvssdNRWAvvsnvgLAGLPGYTGTL 256
Cdd:cd20718  193 nIGRPLHDAFLDPDGRYFIVASQGSNTMWVLDLKTGKVV---ARIPTGKTPHP------GPGA------TWGRKGVTATP 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 257 AGDADSVALIDVSRvpFRTVQYLTVPSLPEGVAISPNGKWIAVQAMdgsnLTADNPGrhkigKVLLFEIRDGRAVKVNEV 336
Cdd:cd20718  258 HLGEGIVTVWDLDT--WKPVKYIPTPGPGRFVRTHPSSPYVWADTV----FGPENAD-----EIYVIDKETLKVVKTLIP 326

                        330       340
                 ....*....|....*....|
gi 939386375 337 PGGEAAQGIVFTADSRHVIV 356
Cdd:cd20718  327 KPGKRALHPEFTRDGKYVYV 346
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 179-376 2.79e-04

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 43.10  E-value: 2.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  179 KKRLAGISFTHDGRHALVSLRDEqgIAVLNVDDGKVTdsgtRL--STGVAPYTIDVSSDNRWAV-VSNV-GLAGLpgYTG 254
Cdd:COG4946   301 SGYLTSFALSPDGKRVAFEARGE--VFTVPAEKGPTR----NLtnTPGVRERLPAWSPDGKSIAyFSDAsGEYEL--YIA 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  255 TLAGDADSVALIDVSrvpfrtvqyltvPSLPEGVAISPNGKWIAVqamdgsnltADNPGRhkigkVLLFEIRDGRAVKVN 334
Cdd:COG4946   373 PADGSGEPKQLTLGD------------LGRVFNPVWSPDGKKIAF---------TDNRGR-----LWVVDLASGKVRKVD 426

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 939386375  335 EVPGGEAAQGIVFTADSRHVIVQF---NVERQLALYAVEGGKLRD 376
Cdd:COG4946   427 TDGYGDGISDLAWSPDSKWLAYSKpgpNQLSQIFLYDVETGKTVQ 471
 
Name Accession Description Interval E-value
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
50-268 3.35e-14

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 71.65  E-value: 3.35e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  50 LPSPPADTLTLLDASTFPPKVALQVDVENGIQGPPQAVAITPDAKLALVGAPTRYDTAAKQLVF-----DTFLQVVNLDS 124
Cdd:COG3391   20 ALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYvansgSGRVSVIDLAT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 125 APPaITRIELGTHPQGIAIDRSGRLALVANVDGRvSILRIDGTQVTLEGNLKIGKKrLAGISFTHDGRHALVSLRDEQGI 204
Cdd:COG3391  100 GKV-VATIPVGGGPRGLAVDPDGGRLYVADSGNG-RVSVIDTATGKVVATIPVGAG-PHGIAVDPDGKRLYVANSGSNTV 176

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939386375 205 A----VLNVDDGKVTDsgtRLSTGVAPYTIDVSSDNRWAVVSNvglaglpGYTGTLAGDADSVALIDV 268
Cdd:COG3391  177 SvivsVIDTATGKVVA---TIPVGGGPVGVAVSPDGRRLYVAN-------RGSNTSNGGSNTVSVIDL 234
Pgl COG2706
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
135-393 7.26e-12

6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442025 [Multi-domain]  Cd Length: 352  Bit Score: 66.08  E-value: 7.26e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 135 GTHPQGIAIDRSGRLALVAN-VDGRVSILRI--DGT------QVTLEGNlKIGKKRLAG-----ISFTHDGRHALVSlrd 200
Cdd:COG2706   92 GASPCHLSVDPDGRFLFVANyGGGSVSVFPIdaDGSlgepvqVIQHEGS-GPNPERQEGphahsVVFDPDGRFLYVP--- 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 201 EQG---IAV--LNVDDGKVTDSG-TRLSTGVAPYTIDVSSDNRWAVVSNvglaglpGYTGTLagdadSVALIDVSRVPFR 274
Cdd:COG2706  168 DLGtdrIYVyrLDPATGKLPEPPeVSLPPGSGPRHLAFHPNGRFAYVIN-------ELDSTV-----SVYAYDAATGTLT 235

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 275 TVQylTVPSLPEG---------VAISPNGKWIAVqamdgSNLTADNpgrhkigkVLLFEI--RDGRAVKVNEVP-GGEAA 342
Cdd:COG2706  236 LIQ--TVSTLPEDftgenwaadIHISPDGRFLYV-----SNRGHNS--------IAVFAIdaDGGKLTLVGHVPtGGKWP 300

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 939386375 343 QGIVFTADSRHVIV--QFNveRQLALYAV--EGGKLRDTGKRIAlTGGPSSLRTL 393
Cdd:COG2706  301 RDFAIDPDGRFLLVanQKS--DNITVFRIdaDTGKLTPTGRSVP-VPSPVCVAFL 352
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
119-356 5.64e-10

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 59.32  E-value: 5.64e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 119 VVNLDSAPPAITRIELGTHPQGIAIDRSGRLALVANVDGRVSILRIDGTQVTLEGNLKIGKKRLAGISFTHDGRHALVSL 198
Cdd:COG3391    7 LLVAVLLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVAN 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 199 RDEQGIAVLNVDDGKVTDsgtRLSTGVAPYTIDVSSDNRWAVVSNvglaglpgytgtlaGDADSVALIDVSRvpFRTVQY 278
Cdd:COG3391   87 SGSGRVSVIDLATGKVVA---TIPVGGGPRGLAVDPDGGRLYVAD--------------SGNGRVSVIDTAT--GKVVAT 147

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939386375 279 LTVPSLPEGVAISPNGKWIAVQAMDGSNLtadnpgrHKIgkVLLFEIRDGRAVKvnEVPGGEAAQGIVFTADSRHVIV 356
Cdd:COG3391  148 IPVGAGPHGIAVDPDGKRLYVANSGSNTV-------SVI--VSVIDTATGKVVA--TIPVGGGPVGVAVSPDGRRLYV 214
Pgl COG2706
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
84-243 2.28e-09

6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442025 [Multi-domain]  Cd Length: 352  Bit Score: 58.38  E-value: 2.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  84 PQAVAITPDAKLALV---GAPT----RYDTAAKQLvfdtflqvvnldsAPPAITRIELGTHPQGIAIDRSGRLALVAN-V 155
Cdd:COG2706  152 AHSVVFDPDGRFLYVpdlGTDRiyvyRLDPATGKL-------------PEPPEVSLPPGSGPRHLAFHPNGRFAYVINeL 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 156 DGRVSILRIDGTqvtlEGNLKI------------GKKRLAGISFTHDGRHALVSLRDEQGIAVLNVD--DGKVTDSGTRL 221
Cdd:COG2706  219 DSTVSVYAYDAA----TGTLTLiqtvstlpedftGENWAADIHISPDGRFLYVSNRGHNSIAVFAIDadGGKLTLVGHVP 294

                        170       180
                 ....*....|....*....|..
gi 939386375 222 STGVAPYTIDVSSDNRWAVVSN 243
Cdd:COG2706  295 TGGKWPRDFAIDPDGRFLLVAN 316
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 150-297 4.82e-08

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 54.28  E-value: 4.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  150 ALVAN-VDGRVSIlrIDGTQVTLEGNLKIGKkRLAGISFTHDGRHALVSLRDEQGIAVLNVDDGKVTDSgtrLSTGVAPY 228
Cdd:TIGR03866  13 AYVSNeKDNTISV--IDTATLKVTRTFPVGQ-RPRGITFSKDGKLLYVCASDSDTIQVIDPATGEVLHT---LPSGPDPE 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939386375  229 TIDVSSDNRWAVVSNvglaglpgytgtlaGDADSVALIDVSRVpfRTVQYLTVPSLPEGVAISPNGKWI 297
Cdd:TIGR03866  87 QFALHPNGKILYIAN--------------EDDALVTVIDIETR--KVLAQIDVGVEPEGMAVSPDGKIV 139
WD40 COG2319
WD40 repeat [General function prediction only];
47-356 4.88e-08

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 54.53  E-value: 4.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  47 DTYLPSPPAD-TLTLLDASTFPPKVALQvdvenGIQGPPQAVAITPDAKLALVGAptrydtaakqlvFDTFLQVVNLDSA 125
Cdd:COG2319   90 GRLLASASADgTVRLWDLATGLLLRTLT-----GHTGAVRSVAFSPDGKTLASGS------------ADGTVRLWDLATG 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 126 PPAITrieLGTHPQGI---AIDRSGRLALVANVDGRVSILRIDGTQVTLEgnLKIGKKRLAGISFTHDGRHaLVSLRDEQ 202
Cdd:COG2319  153 KLLRT---LTGHSGAVtsvAFSPDGKLLASGSDDGTVRLWDLATGKLLRT--LTGHTGAVRSVAFSPDGKL-LASGSADG 226

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 203 GIAVLNVDDGKVTDSGTRLSTGVapYTIDVSSDNRWAVVsnvglaglpgytgtlAGDADSVALIDV-SRVPFRTVQYLTV 281
Cdd:COG2319  227 TVRLWDLATGKLLRTLTGHSGSV--RSVAFSPDGRLLAS---------------GSADGTVRLWDLaTGELLRTLTGHSG 289

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939386375 282 PSLpeGVAISPNGKWIAVQAMDGSnltadnpgrhkigkVLLFEIRDGRAVKVNEVPGGeAAQGIVFTADSRHVIV 356
Cdd:COG2319  290 GVN--SVAFSPDGKLLASGSDDGT--------------VRLWDLATGKLLRTLTGHTG-AVRSVAFSPDGKTLAS 347
Cytochrom_D1 pfam02239
Cytochrome D1 heme domain; Cytochrome cd1 (nitrite reductase) catalyzes the conversion of ...
 156-380 7.73e-06

Cytochrome D1 heme domain; Cytochrome cd1 (nitrite reductase) catalyzes the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 heme binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 heme iron of the active site in the oxidized state.


Pssm-ID: 366994 [Multi-domain]  Cd Length: 368  Bit Score: 47.46  E-value: 7.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  156 DGRVSIlrIDGTQVTLEGNLKIGKKRLAGISFTHDGRHALVSLRDeqgiAVLNVDDGKVTDSGTRLSTGVAPYTIDVSSD 235
Cdd:pfam02239  14 AGSVAL--LDGDRKEILARVDTGYALHISRMFSSDGRYVYVIGRD----GGLTKIDLWNQEIVAEVRQGGNARSVATSYD 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  236 NRWAVVSNVglagLPGytGTLAGDADSVALIDVsrVPFRTVQYLTVPSLPEGVAISPNGKWIAVQAMDgsnltadnpgrh 315
Cdd:pfam02239  88 GRYVIVGNY----WPG--QYVIMDGRTLELVKV--IPARGMTGDSPESRVAAIVASPGRPEFVVNLKD------------ 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939386375  316 kIGKVLLFEIRDGRAVKVNEVPGGEAAQGIVFTADSRHVIVQFNVERQLALYAVEGGKLR---DTGKR 380
Cdd:pfam02239 148 -TGEIWLVDYSDGKNLKTTFIEAAKFLHDGGFDPDGRYFMAAANASDKIAVWDTKRGKLVallDYGKT 214
WD40 COG2319
WD40 repeat [General function prediction only];
81-393 8.69e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 47.60  E-value: 8.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  81 QGPPQAVAITPDAKLALVGAPTRYDTAAKQLVFDTFLQVVNLDSAPPAITRIELGTHPQGIAIDRSGRLALVANVDGRVS 160
Cdd:COG2319   24 ALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 161 ILRIDGTQvtLEGNLKIGKKRLAGISFTHDGRHaLVSLRDEQGIAVLNVDDGKVTDSGTRLSTGVapYTIDVSSDNRWAV 240
Cdd:COG2319  104 LWDLATGL--LLRTLTGHTGAVRSVAFSPDGKT-LASGSADGTVRLWDLATGKLLRTLTGHSGAV--TSVAFSPDGKLLA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 241 VsnvglaglpgytgtlAGDADSVALIDVSRvpFRTVQYLTVPSLP-EGVAISPNGKWIAVQAMDGSnltadnpgrhkigk 319
Cdd:COG2319  179 S---------------GSDDGTVRLWDLAT--GKLLRTLTGHTGAvRSVAFSPDGKLLASGSADGT-------------- 227

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939386375 320 VLLFEIRDGRAVKVNEVPGGeAAQGIVFTADSRHVIVqFNVERQLALYAVEGGKLRDTgkriaLTGGPSSLRTL 393
Cdd:COG2319  228 VRLWDLATGKLLRTLTGHSG-SVRSVAFSPDGRLLAS-GSADGTVRLWDLATGELLRT-----LTGHSGGVNSV 294
WD40 COG2319
WD40 repeat [General function prediction only];
78-305 9.09e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 47.60  E-value: 9.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  78 NGIQGPPQAVAITPDAKLALVGAptrydtaakqlvFDTFLQVVNLDSAPPAITRIELGTHPQGIAIDRSGRLALVANVDG 157
Cdd:COG2319  201 TGHTGAVRSVAFSPDGKLLASGS------------ADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADG 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 158 RVSILRIDGTQvtLEGNLKIGKKRLAGISFTHDGRHaLVSLRDEQGIAVLNVDDGKVTDSGTRLSTGVapYTIDVSSDNR 237
Cdd:COG2319  269 TVRLWDLATGE--LLRTLTGHSGGVNSVAFSPDGKL-LASGSDDGTVRLWDLATGKLLRTLTGHTGAV--RSVAFSPDGK 343

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939386375 238 WAVVsnvglaglpgytgtlAGDADSVALIDVSRVpfRTVQYLTVPSLP-EGVAISPNGKWIAVQAMDGS 305
Cdd:COG2319  344 TLAS---------------GSDDGTVRLWDLATG--ELLRTLTGHTGAvTSVAFSPDGRTLASGSADGT 395
8prop_heme_binding_protein cd20718
eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; ...
 32-356 9.24e-06

eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; Members here contain an 8-bladed beta-propeller heme-binding domain in cytochrome cd1 (nitrite reductase) and similar proteins including NirN and NirF. During denitrification, nitrate (Nar), nitrite (Nir), nitric oxide (Nor), and nitrous oxide (Nos) reductases catalyze the reaction cascade of NO(3-)-> NO(2-)-> NO -> N2O -> N2. The integral membrane proteins NorC, NorB, and NosR form the core assembly platform that binds the nitrate reductase NarGHI and the periplasmic nitrite reductase NirS via its maturation factor NirF. NirN and NirF form a stable complex with the nitrite reductase NirS during enzyme maturation. NirF is involved in heme d1 insertion.


Pssm-ID: 467720 [Multi-domain]  Cd Length: 380  Bit Score: 47.33  E-value: 9.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  32 IVSGNDGKYQRVEGRDTYLpsppadtlTLLDASTFPPKVALQVDVENgiqgppQAVAITPDAKLALVGAptrYDTAakql 111
Cdd:cd20718   64 VVFSPDGRFAYVISRDGWL--------TKIDLYTLRPVASIRIGVNS------RGIALSDDGKYVIAGN---YEPG---- 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 112 vfdtflQVVNLDS---APpaITRIEL-GTHPQGIAIDRSGRLA-------LVANVDGRVSILRIDGTQvtLEGNLKI--- 177
Cdd:cd20718  123 ------HVVILDAdtlEP--LKVIPTtGVNDDGIIESRVGAILetppgpyFLVALKDAGSVWVIDYSD--PDGNKVTdig 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 178 -GKKRLAGISFTHDGRHALVSLRDEQGIAVLNVDDGKVTdsgTRLSTGVAPYTidvssdNRWAvvsnvgLAGLPGYTGTL 256
Cdd:cd20718  193 nIGRPLHDAFLDPDGRYFIVASQGSNTMWVLDLKTGKVV---ARIPTGKTPHP------GPGA------TWGRKGVTATP 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 257 AGDADSVALIDVSRvpFRTVQYLTVPSLPEGVAISPNGKWIAVQAMdgsnLTADNPGrhkigKVLLFEIRDGRAVKVNEV 336
Cdd:cd20718  258 HLGEGIVTVWDLDT--WKPVKYIPTPGPGRFVRTHPSSPYVWADTV----FGPENAD-----EIYVIDKETLKVVKTLIP 326

                        330       340
                 ....*....|....*....|
gi 939386375 337 PGGEAAQGIVFTADSRHVIV 356
Cdd:cd20718  327 KPGKRALHPEFTRDGKYVYV 346
Lactonase pfam10282
Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases ...
 87-243 1.09e-05

Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.


Pssm-ID: 431196 [Multi-domain]  Cd Length: 340  Bit Score: 46.83  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375   87 VAITPDAKLALV---GAPT----RYDTAAKQLVfdtflqvvnldsaPPAITRIELGTHPQGIAIDRSGRLALVAN-VDGR 158
Cdd:pfam10282 148 VDLTPDGKFLVVpdlGTDRvrvyKLDAGGGKLT-------------PPASVQTPPGSGPRHLAFHPNGKYAYVVNeLSST 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  159 VSILRIDG---------TQVTLEGNLKiGKKRLAGISFTHDGRHALVSLRDEQGIAVLNVD--DGKVTDSGTRLSTGVAP 227
Cdd:pfam10282 215 VTVFEYDPatgtfeelqTVSTLPEGFT-GTNGAAAIRVSPDGKFLYVSNRGHDSIAVFAVDeaGGTLTLVERVSTEGDFP 293

                         170
                  ....*....|....*.
gi 939386375  228 YTIDVSSDNRWAVVSN 243
Cdd:pfam10282 294 RDFNIDPDGKFLVVAN 309
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 179-376 2.79e-04

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 43.10  E-value: 2.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  179 KKRLAGISFTHDGRHALVSLRDEqgIAVLNVDDGKVTdsgtRL--STGVAPYTIDVSSDNRWAV-VSNV-GLAGLpgYTG 254
Cdd:COG4946   301 SGYLTSFALSPDGKRVAFEARGE--VFTVPAEKGPTR----NLtnTPGVRERLPAWSPDGKSIAyFSDAsGEYEL--YIA 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  255 TLAGDADSVALIDVSrvpfrtvqyltvPSLPEGVAISPNGKWIAVqamdgsnltADNPGRhkigkVLLFEIRDGRAVKVN 334
Cdd:COG4946   373 PADGSGEPKQLTLGD------------LGRVFNPVWSPDGKKIAF---------TDNRGR-----LWVVDLASGKVRKVD 426

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 939386375  335 EVPGGEAAQGIVFTADSRHVIVQF---NVERQLALYAVEGGKLRD 376
Cdd:COG4946   427 TDGYGDGISDLAWSPDSKWLAYSKpgpNQLSQIFLYDVETGKTVQ 471
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 57-292 3.47e-04

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 42.33  E-value: 3.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375   57 TLTLLDASTfpPKVALQVDVenGIQgpPQAVAITPDAKLALVGAPTR-----YDTAAKQLVFDTFLqvvnldsappaitr 131
Cdd:TIGR03866 106 LVTVIDIET--RKVLAQIDV--GVE--PEGMAVSPDGKIVVNTSETTnmahwIDTATYEIVDNTLV-------------- 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  132 ielGTHPQGIAIDRSGRLALV-ANVDGRVSILRIDGTQVTLEGNLKIG---KKRL--AGISFTHDGRHALVSLRDEQGIA 205
Cdd:TIGR03866 166 ---DARPRFAEFTADGKELWVsSEIGGTVTVIDVATRKVIKKITFAIPgvhPEKVqpVGIKLTKDGKTAFVALGPANRVA 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  206 VLNVDDGKVTDsgtRLSTGVAPYTIDVSSDNRWAVVSNvglaglpgytgtlaGDADSVALIDV-SRVPFRTVQyltVPSL 284
Cdd:TIGR03866 243 VVDAKTYEVLD---YLLVGQRVWQLAFTPDESRLLTTN--------------GVSNDVSVIDVaALKVIKSIK---VGRL 302


                  ....*...
gi 939386375  285 PEGVAISP 292
Cdd:TIGR03866 303 PWGVVVRP 310
Lactonase pfam10282
Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases ...
 118-308 7.09e-04

Lactonase, 7-bladed beta-propeller; This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.


Pssm-ID: 431196 [Multi-domain]  Cd Length: 340  Bit Score: 41.44  E-value: 7.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  118 QVVNLDSAPPAITRIElGTHPQGIAIDRSGRLALVanVD---GRVSILRIDGTQVTL----EGNLKIGkkrlAG---ISF 187
Cdd:pfam10282 126 QVVQHEGSGPPPERQE-SPHPHSVDLTPDGKFLVV--PDlgtDRVRVYKLDAGGGKLtppaSVQTPPG----SGprhLAF 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375  188 THDGRHA-LVSLRDEQgIAVLNVD--DGKVTDSGTrLSTGVAPYT-------IDVSSDNRWAVVSNVGlaglpgytgtla 257
Cdd:pfam10282 199 HPNGKYAyVVNELSST-VTVFEYDpaTGTFEELQT-VSTLPEGFTgtngaaaIRVSPDGKFLYVSNRG------------ 264

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 939386375  258 gdADSVALIDVSRVP--FRTVQYltVPSL---PEGVAISPNGKWIAVQAMDGSNLT 308
Cdd:pfam10282 265 --HDSIAVFAVDEAGgtLTLVER--VSTEgdfPRDFNIDPDGKFLVVANQDSDNVT 316
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
135-369 8.90e-04

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 40.77  E-value: 8.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 135 GTHPQGIAIDRSGRLALVANVDGRvsILRIDGTqvtlEGNLKI-----GKKRLAGISFTHDGRhALVSLRDEQGIAVLNV 209
Cdd:COG4257   58 GSGPHGIAVDPDGNLWFTDNGNNR--IGRIDPK----TGEITTfalpgGGSNPHGIAFDPDGN-LWFTDQGGNRIGRLDP 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 210 DDGKVTDSGTRLSTGVaPYTIDVSSDNRWAVVSNvglaglpgytgtlagDADSVALIDVSRVPFRTVQYLTVPSLPEGVA 289
Cdd:COG4257  131 ATGEVTEFPLPTGGAG-PYGIAVDPDGNLWVTDF---------------GANAIGRIDPDTGTLTEYALPTPGAGPRGLA 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 290 ISPNGK-WIAvqamdgsnltadNPGRHKIGKvllFEIRDGRAVKVNEVPGGEAAQGIVFTADSR--------HVIVQFNV 360
Cdd:COG4257  195 VDPDGNlWVA------------DTGSGRIGR---FDPKTGTVTEYPLPGGGARPYGVAVDGDGRvwfaesgaNRIVRFDP 259


                 ....*....
gi 939386375 361 ERQLALYAV 369
Cdd:COG4257  260 DTELTEYVL 268
Pgl COG2706
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
187-356 1.25e-03

6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442025 [Multi-domain]  Cd Length: 352  Bit Score: 40.66  E-value: 1.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 187 FTHDGRHALVSLRDEQG-IAVLNVD--DGKVTDSGTRLSTGVAPYTIDVSSDNRWAVVSNVG---LAGLP-GYTGTLAGD 259
Cdd:COG2706   52 LSPDGRFLYAVNEVDDGgVSAFRIDpaDGTLTLLNTVSSGGASPCHLSVDPDGRFLFVANYGggsVSVFPiDADGSLGEP 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939386375 260 ADSVALIDVSRVPFRTVQyltvpSLPEGVAISPNGKWIAVqamdgSNLTADnpgrhkigKVLLFEI--RDGRAVKVNEV- 336
Cdd:COG2706  132 VQVIQHEGSGPNPERQEG-----PHAHSVVFDPDGRFLYV-----PDLGTD--------RIYVYRLdpATGKLPEPPEVs 193

                        170       180
                 ....*....|....*....|.
gi 939386375 337 -PGGEAAQGIVFTADSRHVIV 356
Cdd:COG2706  194 lPPGSGPRHLAFHPNGRFAYV 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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