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Conserved domains on  [gi|940387785|ref|WP_054982343|]
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MULTISPECIES: cytochrome-c oxidase, cbb3-type subunit III [Pseudoalteromonas]

Protein Classification

cytochrome c family protein( domain architecture ID 229496)

cytochrome c family protein is a ubiquitous heme protein in mitochondria and bacteria, possessing a CXXCH motif with covalently attached heme; in both prokaryotes and eukaryotes it functions to transfer electrons from reduced substrates to physiological partners, thereby driving the pathway leading to oxidative phosphorylation and ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DHOR super family cl21467
Di-haem oxidoreductase, putative peroxidase; DHOR is a family of di-haem oxidoredictases. It ...
 33-341 7.00e-79

Di-haem oxidoreductase, putative peroxidase; DHOR is a family of di-haem oxidoredictases. It carries the two characteriztic Cys-X-Y-Cys-His haem-binding motifs. The C-terminal high-potential site functions as an electron transfer centre, and the N-terminal low-potential site corresponds to the peroxidatic centre. Its probable function is as a peroxidase.


The actual alignment was detected with superfamily member TIGR00782:

Pssm-ID: 473872 [Multi-domain]  Cd Length: 285  Bit Score: 242.88  E-value: 7.00e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785   33 GVKEGEDCGHEYDGITELNNPLPKWWTYMFFATFIWSVYYLAAYPGL----GNWEGLGKWTSSNQgitslaeskeataka 108
Cdd:TIGR00782   5 SQGEVQTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWplvsGATKGLLGWSSRSQ--------------- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  109 keegryvkLDKEYEAAQERFGPIFNKLAQVPVLDLvnskfegdaAQQVALEngekheqtdgQLALEIGQRLFSQNCAQCH 188
Cdd:TIGR00782  70 --------VEEEIKKFNEKNAAKWAKLAQTPLEDI---------AKDPELK----------QYARNAGAAIFRTWCAQCH 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  189 GSDARGATGFPNLTDKDWLYGGSPDKIKETLLYGR---------VAAMPSWSAALGEQGVKEMTAHVLSLSGRTvnQKDA 259
Cdd:TIGR00782 123 GSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrdpddgdtyVGEMPAFGPLLEEADIKDVASYVMSLSSGK--PKDE 200

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  260 AAGAAKFAM----CAACHGADGKGSVAhnlpFGAPNLTDNIWLYGGSQRAVEETLNHGRAGVMPAWKDILGEDKIHLLTA 335
Cdd:TIGR00782 201 ALAAKGQELfadnCTTCHGEDGKGLQE----LGAPNLTDDVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKALAA 276


                  ....*.
gi 940387785  336 YVYSLS 341
Cdd:TIGR00782 277 YVHSLG 282
 
Name Accession Description Interval E-value
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 33-341 7.00e-79

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 242.88  E-value: 7.00e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785   33 GVKEGEDCGHEYDGITELNNPLPKWWTYMFFATFIWSVYYLAAYPGL----GNWEGLGKWTSSNQgitslaeskeataka 108
Cdd:TIGR00782   5 SQGEVQTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWplvsGATKGLLGWSSRSQ--------------- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  109 keegryvkLDKEYEAAQERFGPIFNKLAQVPVLDLvnskfegdaAQQVALEngekheqtdgQLALEIGQRLFSQNCAQCH 188
Cdd:TIGR00782  70 --------VEEEIKKFNEKNAAKWAKLAQTPLEDI---------AKDPELK----------QYARNAGAAIFRTWCAQCH 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  189 GSDARGATGFPNLTDKDWLYGGSPDKIKETLLYGR---------VAAMPSWSAALGEQGVKEMTAHVLSLSGRTvnQKDA 259
Cdd:TIGR00782 123 GSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrdpddgdtyVGEMPAFGPLLEEADIKDVASYVMSLSSGK--PKDE 200

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  260 AAGAAKFAM----CAACHGADGKGSVAhnlpFGAPNLTDNIWLYGGSQRAVEETLNHGRAGVMPAWKDILGEDKIHLLTA 335
Cdd:TIGR00782 201 ALAAKGQELfadnCTTCHGEDGKGLQE----LGAPNLTDDVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKALAA 276


                  ....*.
gi 940387785  336 YVYSLS 341
Cdd:TIGR00782 277 YVHSLG 282
FixP_N pfam14715
N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the ...
 36-82 2.46e-21

N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the cytochrome oxidase type-cbb3. the exact function is not known.


Pssm-ID: 464278  Cd Length: 48  Bit Score: 85.67  E-value: 2.46e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 940387785   36 EGEDCGHEYDGITELNNPLPKWWTYMFFATFIWSVYYLAAYPGLGNW 82
Cdd:pfam14715   1 GDETTGHEWDGIRELNNPLPRWWLWLFYATIVFAVVYLVLYPGLGLG 47
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
172-252 2.58e-20

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 86.54  E-value: 2.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 172 ALEIGQRLFSQNCAQCHGSDARGATG-FPNLTDkDWLYGGSPDKIKETLLYGRVA-AMPSWSAALGEQGVKEMTAHVLSL 249
Cdd:COG2010   88 ALARGKALYEQNCAACHGADGKGGLGaAPNLTD-DALYGGDPEALVETILNGRPGgAMPAFGGQLSDEEIAALAAYLRSL 166


                 ...
gi 940387785 250 SGR 252
Cdd:COG2010  167 SGN 169
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 136-252 2.60e-08

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 54.44  E-value: 2.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 136 AQVPVLDLVNSKFEGDAAQQVALENGEKHEQTDGQLALEIGQRLFSQNCAQCHGSDARGATGfPNLTDKDwlYGGSPDKI 215
Cdd:PRK14486 178 AMVAYMQSLGKAIPRRAAGGAEVDLELPNPFATDVAAIAKGKALYDANCAACHGDEAQGQEG-VALNDID--DGDLPDAA 254

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 940387785 216 KETLLYG--RVAAMPSWSAALGEQGVKEMTAHVLSLSGR 252
Cdd:PRK14486 255 YFGMIKGgsDAKGMPGFGGDLSDDDIWAIVAYIRSQKAH 293
 
Name Accession Description Interval E-value
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 33-341 7.00e-79

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 242.88  E-value: 7.00e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785   33 GVKEGEDCGHEYDGITELNNPLPKWWTYMFFATFIWSVYYLAAYPGL----GNWEGLGKWTSSNQgitslaeskeataka 108
Cdd:TIGR00782   5 SQGEVQTTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWplvsGATKGLLGWSSRSQ--------------- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  109 keegryvkLDKEYEAAQERFGPIFNKLAQVPVLDLvnskfegdaAQQVALEngekheqtdgQLALEIGQRLFSQNCAQCH 188
Cdd:TIGR00782  70 --------VEEEIKKFNEKNAAKWAKLAQTPLEDI---------AKDPELK----------QYARNAGAAIFRTWCAQCH 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  189 GSDARGATGFPNLTDKDWLYGGSPDKIKETLLYGR---------VAAMPSWSAALGEQGVKEMTAHVLSLSGRTvnQKDA 259
Cdd:TIGR00782 123 GSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrdpddgdtyVGEMPAFGPLLEEADIKDVASYVMSLSSGK--PKDE 200

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  260 AAGAAKFAM----CAACHGADGKGSVAhnlpFGAPNLTDNIWLYGGSQRAVEETLNHGRAGVMPAWKDILGEDKIHLLTA 335
Cdd:TIGR00782 201 ALAAKGQELfadnCTTCHGEDGKGLQE----LGAPNLTDDVWLYGGDLKTITTTITNGRGGVMPAWGPRLSEAQIKALAA 276


                  ....*.
gi 940387785  336 YVYSLS 341
Cdd:TIGR00782 277 YVHSLG 282
FixP_N pfam14715
N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the ...
 36-82 2.46e-21

N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the cytochrome oxidase type-cbb3. the exact function is not known.


Pssm-ID: 464278  Cd Length: 48  Bit Score: 85.67  E-value: 2.46e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 940387785   36 EGEDCGHEYDGITELNNPLPKWWTYMFFATFIWSVYYLAAYPGLGNW 82
Cdd:pfam14715   1 GDETTGHEWDGIRELNNPLPRWWLWLFYATIVFAVVYLVLYPGLGLG 47
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
172-252 2.58e-20

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 86.54  E-value: 2.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 172 ALEIGQRLFSQNCAQCHGSDARGATG-FPNLTDkDWLYGGSPDKIKETLLYGRVA-AMPSWSAALGEQGVKEMTAHVLSL 249
Cdd:COG2010   88 ALARGKALYEQNCAACHGADGKGGLGaAPNLTD-DALYGGDPEALVETILNGRPGgAMPAFGGQLSDEEIAALAAYLRSL 166


                 ...
gi 940387785 250 SGR 252
Cdd:COG2010  167 SGN 169
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
269-343 5.95e-16

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 74.60  E-value: 5.95e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 940387785 269 CAACHGADGKGSVAHnlpfgAPNLTDNIwLYGGSQRAVEETLNHGR-AGVMPAWKDILGEDKIHLLTAYVYSLSQD 343
Cdd:COG2010  100 CAACHGADGKGGLGA-----APNLTDDA-LYGGDPEALVETILNGRpGGAMPAFGGQLSDEEIAALAAYLRSLSGN 169
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
172-246 6.10e-12

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 60.11  E-value: 6.10e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 940387785  172 ALEIGQRLFSQNCAQCHGSDARGatgfPNLTDKDWlyggSPDKIKETLLYGRvAAMPSWSAALGEQGVKEMTAHV 246
Cdd:pfam13442   2 AAAAGEALYAANCASCHGTGGAG----PSLAGRAL----PPEALVDIIRNGK-GAMPAFGGDLSDEELEALAAYL 67
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
268-342 7.28e-11

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 58.20  E-value: 7.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 268 MCAACHGADGKGsvahNLPFGAPNLTdniwlyGGSQRAVEETLNHGRAG-----VMPAWKDILGEDKIHLLTAYVYSLSQ 342
Cdd:COG2863   24 ACAACHGADGEG----NPGGGAPRLA------GQHAEYLVAQLKAFRSGarkngVMPAIAKGLSDEDIKALAAYIASLKA 93
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 136-252 2.60e-08

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 54.44  E-value: 2.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 136 AQVPVLDLVNSKFEGDAAQQVALENGEKHEQTDGQLALEIGQRLFSQNCAQCHGSDARGATGfPNLTDKDwlYGGSPDKI 215
Cdd:PRK14486 178 AMVAYMQSLGKAIPRRAAGGAEVDLELPNPFATDVAAIAKGKALYDANCAACHGDEAQGQEG-VALNDID--DGDLPDAA 254

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 940387785 216 KETLLYG--RVAAMPSWSAALGEQGVKEMTAHVLSLSGR 252
Cdd:PRK14486 255 YFGMIKGgsDAKGMPGFGGDLSDDDIWAIVAYIRSQKAH 293
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 174-250 1.75e-07

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 48.30  E-value: 1.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  174 EIGQRLFSQNCAQCHGSDARGAT-GFPNLTDKDWLYGGSPDKI----KETLLYGRVA--------AMPSWSaALGEQGVK 240
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGaGGPDLAGLAARYPGDALGAirenKHAIGGGGVDraggppgtGMPAFD-GLTDEEIA 79

                          90
                  ....*....|
gi 940387785  241 EMTAHVLSLS 250
Cdd:pfam00034  80 DLVAYLLSLS 89
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
174-251 2.11e-07

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 48.57  E-value: 2.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 174 EIGQRlFSQNCAQCHGSDARG--ATGFPNLTDKdwlyggSPDKIKETLLYGR-----VAAMPSWSAALGEQGVKEMTAHV 246
Cdd:COG2863   16 ARGKA-YAAACAACHGADGEGnpGGGAPRLAGQ------HAEYLVAQLKAFRsgarkNGVMPAIAKGLSDEDIKALAAYI 88


                 ....*
gi 940387785 247 LSLSG 251
Cdd:COG2863   89 ASLKA 93
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 171-341 4.82e-07

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 49.85  E-value: 4.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 171 LALEIGQRLFS--QNCAQCHGSDARGATG----FPNLTDKDWLYGGSPDKIKETLLYGRVAAMPswsaALGEQGVKEMTA 244
Cdd:COG3258   10 AAARRGEELFTngLSCASCHLDAGTKPWGvaaaYPAYRARNGKVVTLEDRINGCFTRSMNGKPL----PLDSAEMKALVA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 245 HVLSLS-GRTVNQKDAAAGAAKFAM-----------------CAACHGADGKGSVAHNLPFGAPNLT-DNIWLYGGSQRA 305
Cdd:COG3258   86 YLRWLSrGLPVGVKLDGRGLPKLPKpaasadvergkalyaerCASCHGADGEGQGRADGQYGFPPLWgGDSYNDGAGMAR 165

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 940387785 306 VEETLNHGRAGVMPAWK-DILGEDKIHLLTAYVYSLS 341
Cdd:COG3258  166 LGTLADFIKGRNMPLGKpGSLSDDEAWDVAAYVRSLP 202
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
268-337 2.26e-06

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 44.70  E-value: 2.26e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  268 MCAACHGADGKGsvahnlpfgaPNLTDNIWlyggSQRAVEETLNHGRaGVMPAWKDILGEDKIHLLTAYV 337
Cdd:pfam13442  13 NCASCHGTGGAG----------PSLAGRAL----PPEALVDIIRNGK-GAMPAFGGDLSDEELEALAAYL 67
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 176-258 1.40e-05

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 45.61  E-value: 1.40e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 176 GQRLFSQNCAQCHGSD------ARGATGFPNLT-DKDWLYGGSPDKIkeTLLYGRV--AAMPSWSA-ALGEQGVKEMTAH 245
Cdd:COG3258  120 GKALYAERCASCHGADgegqgrADGQYGFPPLWgGDSYNDGAGMARL--GTLADFIkgRNMPLGKPgSLSDDEAWDVAAY 197

                         90
                 ....*....|...
gi 940387785 246 VLSLSGRTVNQKD 258
Cdd:COG3258  198 VRSLPRPVPRKTD 210
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 269-341 2.37e-05

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 42.53  E-value: 2.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785  269 CAACHGADGKGSVAHnlpfgAPNL-----------TDNIWLYGGSQRAVEETLNHGRAGVMPAWKDILGEDKIHLLTAYV 337
Cdd:pfam00034  11 CAACHGVNGEGAGAG-----GPDLaglaarypgdaLGAIRENKHAIGGGGVDRAGGPPGTGMPAFDGLTDEEIADLVAYL 85


                  ....
gi 940387785  338 YSLS 341
Cdd:pfam00034  86 LSLS 89
c550_PedF TIGR04494
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote ...
 167-239 8.77e-05

cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.


Pssm-ID: 275287  Cd Length: 133  Bit Score: 42.00  E-value: 8.77e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 940387785  167 TDGQLALEIGQRLFSQNCAQCHGSDARGATGFPNLTDKDwlYGGSPDK-IKETLLYGRVA----AMPSWSAALGEQGV 239
Cdd:TIGR04494  45 TGHKEAIRIGASAYNQNCARCHGLEAISGGIAPDLRKLD--AGEDGDEwFVERVRHGAVRdgrvYMPPFEGILSQEAL 120
PetJ COG5677
Cytochrome c6 [Energy production and conversion];
171-248 1.49e-03

Cytochrome c6 [Energy production and conversion];


Pssm-ID: 444391 [Multi-domain]  Cd Length: 112  Bit Score: 37.93  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940387785 171 LALEI--GQRLFSQNCAQCH--GSDA--RGATgfpnLTDKDW-LYG-GSPDKIKETLLYGRvAAMPSWSAALGEQGVKEM 242
Cdd:COG5677   24 LAADLanGAKIFSANCAGCHigGGNIirRGKT----LKKEALeKYGmDSLEAIATQVTNGK-NAMPAFKDRLSEEQIEDV 98


                 ....*.
gi 940387785 243 TAHVLS 248
Cdd:COG5677   99 AAYVLD 104
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
176-239 2.17e-03

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 37.17  E-value: 2.17e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 940387785 176 GQRLFSQNCAQCH--GSDARGATGfPNLTDkdwlyggspdkiketlLYGRVAAM---PSWSAALGEQGV 239
Cdd:COG3474    6 GEKLFNRKCAACHsvDGGAGNRVG-PNLNG----------------VVGRKAGSvegFAYSDALKASGL 57
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 269-340 7.82e-03

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 37.49  E-value: 7.82e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 940387785 269 CAACHGADGKGSVAHNLP-FGAPNLTDNIW---LYGGSQraveetlnhgrAGVMPAWKDILGEDKIHLLTAYVYSL 340
Cdd:PRK14486 226 CAACHGDEAQGQEGVALNdIDDGDLPDAAYfgmIKGGSD-----------AKGMPGFGGDLSDDDIWAIVAYIRSQ 290
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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