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Conserved domains on  [gi|941830011|ref|WP_055197970|]
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MULTISPECIES: DUF6170 family protein [Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6170 super family cl45070
Family of unknown function (DUF6170); This family of proteins is functionally uncharacterized. ...
 3-92 4.84e-09

Family of unknown function (DUF6170); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 84 and 107 amino acids in length.


The actual alignment was detected with superfamily member pfam19667:

Pssm-ID: 437499  Cd Length: 100  Bit Score: 49.30  E-value: 4.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941830011    3 YFFTSQIPALKSFKVRQRQQIIALALAHLSPSKKIILSVCKLAFLAPLF-LGLAYFEGWMLIPWLLLAGLSYPLITTPIE 81
Cdd:pfam19667   4 YFSTRHIPALKGLPLAERVKRLDQAAKKLTVPEKTLLNILKLLVIVPVFvLILQTASNWTSLLWALLVFLLYPLLVKPIQ 83

                          90
                  ....*....|.
gi 941830011   82 NMFALAHLDKA 92
Cdd:pfam19667  84 NSMSAKYLAPA 94
 
Name Accession Description Interval E-value
DUF6170 pfam19667
Family of unknown function (DUF6170); This family of proteins is functionally uncharacterized. ...
 3-92 4.84e-09

Family of unknown function (DUF6170); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 84 and 107 amino acids in length.


Pssm-ID: 437499  Cd Length: 100  Bit Score: 49.30  E-value: 4.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941830011    3 YFFTSQIPALKSFKVRQRQQIIALALAHLSPSKKIILSVCKLAFLAPLF-LGLAYFEGWMLIPWLLLAGLSYPLITTPIE 81
Cdd:pfam19667   4 YFSTRHIPALKGLPLAERVKRLDQAAKKLTVPEKTLLNILKLLVIVPVFvLILQTASNWTSLLWALLVFLLYPLLVKPIQ 83

                          90
                  ....*....|.
gi 941830011   82 NMFALAHLDKA 92
Cdd:pfam19667  84 NSMSAKYLAPA 94
 
Name Accession Description Interval E-value
DUF6170 pfam19667
Family of unknown function (DUF6170); This family of proteins is functionally uncharacterized. ...
 3-92 4.84e-09

Family of unknown function (DUF6170); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 84 and 107 amino acids in length.


Pssm-ID: 437499  Cd Length: 100  Bit Score: 49.30  E-value: 4.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941830011    3 YFFTSQIPALKSFKVRQRQQIIALALAHLSPSKKIILSVCKLAFLAPLF-LGLAYFEGWMLIPWLLLAGLSYPLITTPIE 81
Cdd:pfam19667   4 YFSTRHIPALKGLPLAERVKRLDQAAKKLTVPEKTLLNILKLLVIVPVFvLILQTASNWTSLLWALLVFLLYPLLVKPIQ 83

                          90
                  ....*....|.
gi 941830011   82 NMFALAHLDKA 92
Cdd:pfam19667  84 NSMSAKYLAPA 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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