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Conserved domains on  [gi|941965809|ref|WP_055252684|]
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MULTISPECIES: DUF4869 domain-containing protein [Collinsella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4869 super family cl24670
Domain of unknown function (DUF4869); This family consists of uncharacterized proteins around ...
 13-138 1.37e-68

Domain of unknown function (DUF4869); This family consists of uncharacterized proteins around 150 residues in length. Its members are found in human gut Firmicutes and are also abundant in human gut metagenomics datasets. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam16163:

Pssm-ID: 435182  Cd Length: 128  Bit Score: 203.03  E-value: 1.37e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941965809   13 IYNTATYFKNSYRSSWITDPYAVSIIKDVDRSDVVSENVIESPVLGFISPLQLSGGVKTLLLMRFDRKQIFNASTCGDNC 92
Cdd:pfam16163   1 IYNTPVYFDNQYEDEWITDPFAKEMIKDIDKSTVIGPHLIESPVLGPISPKELSGGVKTLLLMAFDPSKIFNASACGDNC 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 941965809   93 AKWILDMAKDRKLVVNLYHVMDFGREDFKIKVVNSGRIVHNMAELI 138
Cdd:pfam16163  81 AKWILEIAEKKDLTVNLRHIMDFGKKKFEIKILNTGEVVHSMEEFL 126
 
Name Accession Description Interval E-value
DUF4869 pfam16163
Domain of unknown function (DUF4869); This family consists of uncharacterized proteins around ...
 13-138 1.37e-68

Domain of unknown function (DUF4869); This family consists of uncharacterized proteins around 150 residues in length. Its members are found in human gut Firmicutes and are also abundant in human gut metagenomics datasets. The function of this family is unknown.


Pssm-ID: 435182  Cd Length: 128  Bit Score: 203.03  E-value: 1.37e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941965809   13 IYNTATYFKNSYRSSWITDPYAVSIIKDVDRSDVVSENVIESPVLGFISPLQLSGGVKTLLLMRFDRKQIFNASTCGDNC 92
Cdd:pfam16163   1 IYNTPVYFDNQYEDEWITDPFAKEMIKDIDKSTVIGPHLIESPVLGPISPKELSGGVKTLLLMAFDPSKIFNASACGDNC 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 941965809   93 AKWILDMAKDRKLVVNLYHVMDFGREDFKIKVVNSGRIVHNMAELI 138
Cdd:pfam16163  81 AKWILEIAEKKDLTVNLRHIMDFGKKKFEIKILNTGEVVHSMEEFL 126
 
Name Accession Description Interval E-value
DUF4869 pfam16163
Domain of unknown function (DUF4869); This family consists of uncharacterized proteins around ...
 13-138 1.37e-68

Domain of unknown function (DUF4869); This family consists of uncharacterized proteins around 150 residues in length. Its members are found in human gut Firmicutes and are also abundant in human gut metagenomics datasets. The function of this family is unknown.


Pssm-ID: 435182  Cd Length: 128  Bit Score: 203.03  E-value: 1.37e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941965809   13 IYNTATYFKNSYRSSWITDPYAVSIIKDVDRSDVVSENVIESPVLGFISPLQLSGGVKTLLLMRFDRKQIFNASTCGDNC 92
Cdd:pfam16163   1 IYNTPVYFDNQYEDEWITDPFAKEMIKDIDKSTVIGPHLIESPVLGPISPKELSGGVKTLLLMAFDPSKIFNASACGDNC 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 941965809   93 AKWILDMAKDRKLVVNLYHVMDFGREDFKIKVVNSGRIVHNMAELI 138
Cdd:pfam16163  81 AKWILEIAEKKDLTVNLRHIMDFGKKKFEIKILNTGEVVHSMEEFL 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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