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Conserved domains on  [gi|942109895|ref|WP_055305554|]
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MULTISPECIES: YutD-like domain-containing protein [Turicibacter]

Protein Classification

YutD family protein( domain architecture ID 10008577)

YutD family protein is a DUF1027 domain-containing protein; similar to Bacillus subtilis protein YutD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YutD COG4470
Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];
1-90 2.63e-38

Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];


:

Pssm-ID: 443567  Cd Length: 91  Bit Score: 123.41  E-value: 2.63e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942109895   1 MIVSRYRYQVVKTHLVEFDEELFYQKLTEILEKYDVIVGDFSGGQLRLKGFYYNERKNVPLDLKCVTIPEYIAEYCAYGC 80
Cdd:COG4470    2 IKIDGRQYELVENYREAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDQNKKATFDTKISTLQDYLYEYCNFGC 81

                         90
                 ....*....|
gi 942109895  81 PYYVVEKIVP 90
Cdd:COG4470   82 AYFVLKKVNP 91
 
Name Accession Description Interval E-value
YutD COG4470
Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];
1-90 2.63e-38

Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];


Pssm-ID: 443567  Cd Length: 91  Bit Score: 123.41  E-value: 2.63e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942109895   1 MIVSRYRYQVVKTHLVEFDEELFYQKLTEILEKYDVIVGDFSGGQLRLKGFYYNERKNVPLDLKCVTIPEYIAEYCAYGC 80
Cdd:COG4470    2 IKIDGRQYELVENYREAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDQNKKATFDTKISTLQDYLYEYCNFGC 81

                         90
                 ....*....|
gi 942109895  81 PYYVVEKIVP 90
Cdd:COG4470   82 AYFVLKKVNP 91
YutD-like pfam06265
Putative antitoxin YutD-like; This family contains a group of uncharacterized bacterial ...
 3-86 1.34e-26

Putative antitoxin YutD-like; This family contains a group of uncharacterized bacterial proteins, including YutD from Bacillus subtilis (PDBe:2kl5), a probable antitoxin component of a putative type VII toxin-antitoxin (TA) system, that probably neutralizes cognate toxin YutE.


Pssm-ID: 428856  Cd Length: 84  Bit Score: 93.36  E-value: 1.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942109895    3 VSRYRYQVVKTHLVEFDEELFYQKLTEILEKYDVIVGDFSGGQLRLKGFYYNERKNVPLDLKCVTIPEYIAEYCAYGCPY 82
Cdd:pfam06265   1 INGHEYELVENYRDAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDDNRKATKDTKISALQDYLYEYCNFGCAY 80


                  ....
gi 942109895   83 YVVE 86
Cdd:pfam06265  81 FVLK 84
 
Name Accession Description Interval E-value
YutD COG4470
Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];
1-90 2.63e-38

Uncharacterized conserved protein YutD, DUF1027 family [Function unknown];


Pssm-ID: 443567  Cd Length: 91  Bit Score: 123.41  E-value: 2.63e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942109895   1 MIVSRYRYQVVKTHLVEFDEELFYQKLTEILEKYDVIVGDFSGGQLRLKGFYYNERKNVPLDLKCVTIPEYIAEYCAYGC 80
Cdd:COG4470    2 IKIDGRQYELVENYREAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDQNKKATFDTKISTLQDYLYEYCNFGC 81

                         90
                 ....*....|
gi 942109895  81 PYYVVEKIVP 90
Cdd:COG4470   82 AYFVLKKVNP 91
YutD-like pfam06265
Putative antitoxin YutD-like; This family contains a group of uncharacterized bacterial ...
 3-86 1.34e-26

Putative antitoxin YutD-like; This family contains a group of uncharacterized bacterial proteins, including YutD from Bacillus subtilis (PDBe:2kl5), a probable antitoxin component of a putative type VII toxin-antitoxin (TA) system, that probably neutralizes cognate toxin YutE.


Pssm-ID: 428856  Cd Length: 84  Bit Score: 93.36  E-value: 1.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942109895    3 VSRYRYQVVKTHLVEFDEELFYQKLTEILEKYDVIVGDFSGGQLRLKGFYYNERKNVPLDLKCVTIPEYIAEYCAYGCPY 82
Cdd:pfam06265   1 INGHEYELVENYRDAFDEEAFKERYSDILDKYDYIVGDWGYEQLRLKGFYKDDNRKATKDTKISALQDYLYEYCNFGCAY 80


                  ....
gi 942109895   83 YVVE 86
Cdd:pfam06265  81 FVLK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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