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Conserved domains on  [gi|942463864|ref|WP_055319692|]
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FRG domain-containing protein [Vibrio crassostreae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FRG super family cl07460
FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is ...
 38-108 2.22e-10

FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterized.


The actual alignment was detected with superfamily member smart00901:

Pssm-ID: 447389  Cd Length: 103  Bit Score: 56.57  E-value: 2.22e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 942463864    38 ENNNLMPSLGRSNRK----NIRRVEQELLSTVRVYGGHSLSSHDINDWLLMCLAKKQGFPTRLLEWTDNLLNALW 108
Cdd:smart00901  13 AYWPLVPSLFRKKGFypdlLSSDDERRLLRNFKRQAPNRLDKSPSDDLEWLALAQHYGLPTRLLDWTTNPLVALY 87
 
Name Accession Description Interval E-value
FRG smart00901
This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;
38-108 2.22e-10

This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;


Pssm-ID: 214898  Cd Length: 103  Bit Score: 56.57  E-value: 2.22e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 942463864    38 ENNNLMPSLGRSNRK----NIRRVEQELLSTVRVYGGHSLSSHDINDWLLMCLAKKQGFPTRLLEWTDNLLNALW 108
Cdd:smart00901  13 AYWPLVPSLFRKKGFypdlLSSDDERRLLRNFKRQAPNRLDKSPSDDLEWLALAQHYGLPTRLLDWTTNPLVALY 87
FRG pfam08867
FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is ...
 42-108 2.46e-09

FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterized.


Pssm-ID: 430274  Cd Length: 93  Bit Score: 53.41  E-value: 2.46e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 942463864   42 LMPSLGRSN-RKNIRRVEQELLSTVRVYGGHSLSSHDINDWLLMCLAKKQGFPTRLLEWTDNLLNALW 108
Cdd:pfam08867  15 LIPSLYRLGgKKPSLKLEKRLLREFKKYARPRLEEEPENDWDWLALAQHYGLPTRLLDWTYSPLVALY 82
 
Name Accession Description Interval E-value
FRG smart00901
This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;
38-108 2.22e-10

This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;


Pssm-ID: 214898  Cd Length: 103  Bit Score: 56.57  E-value: 2.22e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 942463864    38 ENNNLMPSLGRSNRK----NIRRVEQELLSTVRVYGGHSLSSHDINDWLLMCLAKKQGFPTRLLEWTDNLLNALW 108
Cdd:smart00901  13 AYWPLVPSLFRKKGFypdlLSSDDERRLLRNFKRQAPNRLDKSPSDDLEWLALAQHYGLPTRLLDWTTNPLVALY 87
FRG pfam08867
FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is ...
 42-108 2.46e-09

FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterized.


Pssm-ID: 430274  Cd Length: 93  Bit Score: 53.41  E-value: 2.46e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 942463864   42 LMPSLGRSN-RKNIRRVEQELLSTVRVYGGHSLSSHDINDWLLMCLAKKQGFPTRLLEWTDNLLNALW 108
Cdd:pfam08867  15 LIPSLYRLGgKKPSLKLEKRLLREFKKYARPRLEEEPENDWDWLALAQHYGLPTRLLDWTYSPLVALY 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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