NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|943604321|ref|WP_055434341|]
View 

flagellar assembly protein T N-terminal domain-containing protein [Gulbenkiania indica]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FlgT_M super family cl24070
Flagellar assembly protein T, middle domain; FlgT_M is the middle region of a family of ...
 138-298 4.66e-12

Flagellar assembly protein T, middle domain; FlgT_M is the middle region of a family of flagellar proteins that make up part of the basal body of the flagellum. The flagellum is a large macromolecular assembly composed of three major parts: the basal body, the hook, and the filament. The basal body has two unique ring structures, the T ring and the H ring. FlgT is required to form and stabilize both ring structures. FlgT-N and FlgT-M are thought to be involved in the H-ring and the T-ring formation, respectively. and FlgT-M is also required for the stable association of FlgT with the basal body.


The actual alignment was detected with superfamily member pfam16539:

Pssm-ID: 435409  Cd Length: 163  Bit Score: 63.99  E-value: 4.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321  138 LKRRVIATYFHLLRSAQAPD--LPGLGTGVPAELARRLSLRPAFSGLSAATLALVADPQQAEPLEGA---------ETVR 206
Cdd:pfam16539   8 YKKAIALTQFQLQYRQQARYgqLYDLGEALSRRLQNRLQGSSRSAVSNATADSRIDDLLDLNAGVAPtylsddeslRLIT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321  207 EIGRREDAQFVVAGRVIDTSVTgrrmrpvwfgspangvDPSARYEGPfagllgtgVQNQASERQFEIELWIYDAFTGAVL 286
Cdd:pfam16539  88 DLAEDTDAQYVLSGVIRDLSVE----------------DEHSSGLGF--------WTDDDPQRQFALELTLYDGISGELL 143

                         170
                  ....*....|..
gi 943604321  287 ANDRLAETARGE 298
Cdd:pfam16539 144 FQKRYRTSAPWD 155
FlgT_N super family cl44643
Flagellar assembly protein T, N-terminal domain; FlgT_N is the N-terminal domain of a family ...
 28-109 2.06e-09

Flagellar assembly protein T, N-terminal domain; FlgT_N is the N-terminal domain of a family of flagellar proteins that make up part of the basal body of the flagellum. The flagellum is a large macromolecular assembly composed of three major parts: the basal body, the hook, and the filament. The basal body has two unique ring structures, the T ring and the H ring. FlgT is required to form and stabilize both ring structures. FlgT-N contributes to the construction of the H-ring structure, and adopts a two-layer alpha-beta sandwich architecture composed of a four-stranded anti-parallel beta-sheet and two alpha helices.


The actual alignment was detected with superfamily member pfam16548:

Pssm-ID: 465169  Cd Length: 87  Bit Score: 54.25  E-value: 2.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321   28 YTVTGAAPVDAGPVAAREMALRDAEYQAAVFKGAHLQSSQRLDNAGSSESGRLQPDAGPAPTYRVLREGVRNGLYEVTLE 107
Cdd:pfam16548   3 VEVTGKAAIIGNDDIAREQAREDALSQALLYAGAQVSSISSLQPLLEGSLTETQFSNGEVRNVELLSERVSDGRLTVTLR 82


                  ..
gi 943604321  108 ID 109
Cdd:pfam16548  83 AD 84
 
Name Accession Description Interval E-value
FlgT_M pfam16539
Flagellar assembly protein T, middle domain; FlgT_M is the middle region of a family of ...
 138-298 4.66e-12

Flagellar assembly protein T, middle domain; FlgT_M is the middle region of a family of flagellar proteins that make up part of the basal body of the flagellum. The flagellum is a large macromolecular assembly composed of three major parts: the basal body, the hook, and the filament. The basal body has two unique ring structures, the T ring and the H ring. FlgT is required to form and stabilize both ring structures. FlgT-N and FlgT-M are thought to be involved in the H-ring and the T-ring formation, respectively. and FlgT-M is also required for the stable association of FlgT with the basal body.


Pssm-ID: 435409  Cd Length: 163  Bit Score: 63.99  E-value: 4.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321  138 LKRRVIATYFHLLRSAQAPD--LPGLGTGVPAELARRLSLRPAFSGLSAATLALVADPQQAEPLEGA---------ETVR 206
Cdd:pfam16539   8 YKKAIALTQFQLQYRQQARYgqLYDLGEALSRRLQNRLQGSSRSAVSNATADSRIDDLLDLNAGVAPtylsddeslRLIT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321  207 EIGRREDAQFVVAGRVIDTSVTgrrmrpvwfgspangvDPSARYEGPfagllgtgVQNQASERQFEIELWIYDAFTGAVL 286
Cdd:pfam16539  88 DLAEDTDAQYVLSGVIRDLSVE----------------DEHSSGLGF--------WTDDDPQRQFALELTLYDGISGELL 143

                         170
                  ....*....|..
gi 943604321  287 ANDRLAETARGE 298
Cdd:pfam16539 144 FQKRYRTSAPWD 155
FlgT_N pfam16548
Flagellar assembly protein T, N-terminal domain; FlgT_N is the N-terminal domain of a family ...
 28-109 2.06e-09

Flagellar assembly protein T, N-terminal domain; FlgT_N is the N-terminal domain of a family of flagellar proteins that make up part of the basal body of the flagellum. The flagellum is a large macromolecular assembly composed of three major parts: the basal body, the hook, and the filament. The basal body has two unique ring structures, the T ring and the H ring. FlgT is required to form and stabilize both ring structures. FlgT-N contributes to the construction of the H-ring structure, and adopts a two-layer alpha-beta sandwich architecture composed of a four-stranded anti-parallel beta-sheet and two alpha helices.


Pssm-ID: 465169  Cd Length: 87  Bit Score: 54.25  E-value: 2.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321   28 YTVTGAAPVDAGPVAAREMALRDAEYQAAVFKGAHLQSSQRLDNAGSSESGRLQPDAGPAPTYRVLREGVRNGLYEVTLE 107
Cdd:pfam16548   3 VEVTGKAAIIGNDDIAREQAREDALSQALLYAGAQVSSISSLQPLLEGSLTETQFSNGEVRNVELLSERVSDGRLTVTLR 82


                  ..
gi 943604321  108 ID 109
Cdd:pfam16548  83 AD 84
 
Name Accession Description Interval E-value
FlgT_M pfam16539
Flagellar assembly protein T, middle domain; FlgT_M is the middle region of a family of ...
 138-298 4.66e-12

Flagellar assembly protein T, middle domain; FlgT_M is the middle region of a family of flagellar proteins that make up part of the basal body of the flagellum. The flagellum is a large macromolecular assembly composed of three major parts: the basal body, the hook, and the filament. The basal body has two unique ring structures, the T ring and the H ring. FlgT is required to form and stabilize both ring structures. FlgT-N and FlgT-M are thought to be involved in the H-ring and the T-ring formation, respectively. and FlgT-M is also required for the stable association of FlgT with the basal body.


Pssm-ID: 435409  Cd Length: 163  Bit Score: 63.99  E-value: 4.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321  138 LKRRVIATYFHLLRSAQAPD--LPGLGTGVPAELARRLSLRPAFSGLSAATLALVADPQQAEPLEGA---------ETVR 206
Cdd:pfam16539   8 YKKAIALTQFQLQYRQQARYgqLYDLGEALSRRLQNRLQGSSRSAVSNATADSRIDDLLDLNAGVAPtylsddeslRLIT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321  207 EIGRREDAQFVVAGRVIDTSVTgrrmrpvwfgspangvDPSARYEGPfagllgtgVQNQASERQFEIELWIYDAFTGAVL 286
Cdd:pfam16539  88 DLAEDTDAQYVLSGVIRDLSVE----------------DEHSSGLGF--------WTDDDPQRQFALELTLYDGISGELL 143

                         170
                  ....*....|..
gi 943604321  287 ANDRLAETARGE 298
Cdd:pfam16539 144 FQKRYRTSAPWD 155
FlgT_N pfam16548
Flagellar assembly protein T, N-terminal domain; FlgT_N is the N-terminal domain of a family ...
 28-109 2.06e-09

Flagellar assembly protein T, N-terminal domain; FlgT_N is the N-terminal domain of a family of flagellar proteins that make up part of the basal body of the flagellum. The flagellum is a large macromolecular assembly composed of three major parts: the basal body, the hook, and the filament. The basal body has two unique ring structures, the T ring and the H ring. FlgT is required to form and stabilize both ring structures. FlgT-N contributes to the construction of the H-ring structure, and adopts a two-layer alpha-beta sandwich architecture composed of a four-stranded anti-parallel beta-sheet and two alpha helices.


Pssm-ID: 465169  Cd Length: 87  Bit Score: 54.25  E-value: 2.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943604321   28 YTVTGAAPVDAGPVAAREMALRDAEYQAAVFKGAHLQSSQRLDNAGSSESGRLQPDAGPAPTYRVLREGVRNGLYEVTLE 107
Cdd:pfam16548   3 VEVTGKAAIIGNDDIAREQAREDALSQALLYAGAQVSSISSLQPLLEGSLTETQFSNGEVRNVELLSERVSDGRLTVTLR 82


                  ..
gi 943604321  108 ID 109
Cdd:pfam16548  83 AD 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH