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Conserved domains on  [gi|950281589|ref|WP_057316572|]
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MULTISPECIES: hypothetical protein [Parabacteroides]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LPD3 pfam18798
Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and ...
 314-410 1.45e-13

Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.


:

Pssm-ID: 436745  Cd Length: 110  Bit Score: 66.57  E-value: 1.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950281589  314 KEIKEKA-SLLKQTVIRNKDFRKDIQITGRGIKEWLNQpHKYYEKKNEMLLDIASVIKDAEYIG--CGNDKHGYNAIVHL 390
Cdd:pfam18798   5 KAAKEWLrKNLQGKTIVNKDTGWEIRFSRKGIKKMLSG-HFKNEEHLRAVAAIPELIENAVLVGseEPDKKKPNIKAFHR 83

                          90       100
                  ....*....|....*....|....
gi 950281589  391 FETKVE----NEKSWILVKEQADG 410
Cdd:pfam18798  84 FYAPVEidgkLYTVKLTVRESENG 107
 
Name Accession Description Interval E-value
LPD3 pfam18798
Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and ...
 314-410 1.45e-13

Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.


Pssm-ID: 436745  Cd Length: 110  Bit Score: 66.57  E-value: 1.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950281589  314 KEIKEKA-SLLKQTVIRNKDFRKDIQITGRGIKEWLNQpHKYYEKKNEMLLDIASVIKDAEYIG--CGNDKHGYNAIVHL 390
Cdd:pfam18798   5 KAAKEWLrKNLQGKTIVNKDTGWEIRFSRKGIKKMLSG-HFKNEEHLRAVAAIPELIENAVLVGseEPDKKKPNIKAFHR 83

                          90       100
                  ....*....|....*....|....
gi 950281589  391 FETKVE----NEKSWILVKEQADG 410
Cdd:pfam18798  84 FYAPVEidgkLYTVKLTVRESENG 107
 
Name Accession Description Interval E-value
LPD3 pfam18798
Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and ...
 314-410 1.45e-13

Large polyvalent protein-associated domain 3; This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.


Pssm-ID: 436745  Cd Length: 110  Bit Score: 66.57  E-value: 1.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950281589  314 KEIKEKA-SLLKQTVIRNKDFRKDIQITGRGIKEWLNQpHKYYEKKNEMLLDIASVIKDAEYIG--CGNDKHGYNAIVHL 390
Cdd:pfam18798   5 KAAKEWLrKNLQGKTIVNKDTGWEIRFSRKGIKKMLSG-HFKNEEHLRAVAAIPELIENAVLVGseEPDKKKPNIKAFHR 83

                          90       100
                  ....*....|....*....|....
gi 950281589  391 FETKVE----NEKSWILVKEQADG 410
Cdd:pfam18798  84 FYAPVEidgkLYTVKLTVRESENG 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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