|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
4-500 |
0e+00 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 824.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 4 PLLRELIPLVSDLSRELPDEERYRRLLCSLRHWLPCDATALLRLEGDVLIPLAVDGLSPDALGRRFRVSEHPRFEALLAS 83
Cdd:PRK05022 1 FSLDALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDVLGRRFALEEHPRLEAILRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 84 DGPLRFAADCDLPDPYDGLVDGH-GALEVHDCLGCVLSVQGRPWGLITLDSLDPSSFGSVDLDNLQAFASLAAATVMAGE 162
Cdd:PRK05022 81 GDPVRFPADSELPDPYDGLIPGVqESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDEELRALAALAAATLRNAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 163 RINQLARGFEDQRQLAEVYKRAAGGraPRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAH 242
Cdd:PRK05022 161 LIEQLESQAELPQDVAEFLRQEALK--EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRAD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 243 KPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQE 322
Cdd:PRK05022 239 KPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRS 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 323 HHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLL 402
Cdd:PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 403 AHPWPGNVRELEHLISRAVLKALSAHPQkpRILTVEGSALGLDGlASATPLPTAEkALSAAVQGAGLKASVDAFQRSLIV 482
Cdd:PRK05022 399 AYDWPGNVRELEHVISRAALLARARGAG--RIVTLEAQHLDLPA-EVALPPPEAA-AAPAAVVSQNLREATEAFQRQLIR 474
|
490
....*....|....*...
gi 950599996 483 DCLERHQGRWAEVARDLG 500
Cdd:PRK05022 475 QALAQHQGNWAAAARALE 492
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
171-500 |
5.34e-137 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 403.00 E-value: 5.34e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 171 FEDQRQLAEVYKRAAGGRAPRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNC 250
Cdd:COG3829 118 LERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNC 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 251 AALPEMLVESELFGHVKGAFSGAV-NGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRI 329
Cdd:COG3829 198 AAIPENLLESELFGYEKGAFTGAKkGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRI 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 330 IAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGN 409
Cdd:COG3829 278 IAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGN 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 410 VRELEHLISRAVlkalsahpqkpriLTVEGSALGLDGLASATPLPTAEkalSAAVQGAGLKASVDAFQRSLIVDCLERHQ 489
Cdd:COG3829 358 VRELENVIERAV-------------VLSEGDVITPEHLPEYLLEEAEA---ASAAEEGSLKEALEEVEKELIEEALEKTG 421
|
330
....*....|.
gi 950599996 490 GRWAEVARDLG 500
Cdd:COG3829 422 GNKSKAAKALG 432
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
147-501 |
2.29e-100 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 312.03 E-value: 2.29e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 147 LQAFASLAAATV-----MAGERINQLARGFEDQRQLAEVYKRAAGGRAPRE--LIGQSAVHQRMQQEIELVGNSPLTVLV 219
Cdd:TIGR01817 145 LEMVANLIGQTVrlhrlVAQRRERLIAEAVQLSKQLRDKAPEIARRRSGKEdgIIGKSPAMRQVVDQARVVARSNSTVLL 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 220 MGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPL 299
Cdd:TIGR01817 225 RGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 300 SVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFL 379
Cdd:TIGR01817 305 AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 380 EENRVRMGlRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKALSAH-------------PQKPRILTVEGSALGLDG 446
Cdd:TIGR01817 385 EKFNRENG-RPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTitrsdfscqsgqcLSPMLAKTCPHGHISIDP 463
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 950599996 447 LASATPLPT-AEKALSAAVQGAGLKASvdafQRSLIVDCLERHQGRWAEVARDLGK 501
Cdd:TIGR01817 464 LAGTTPPHSpASAALPGEPGLSGPTLS----ERERLIAALEQAGWVQAKAARLLGM 515
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
193-359 |
4.56e-99 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 295.46 E-value: 4.56e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 193 LIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSG 272
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 273 AVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYH 352
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 950599996 353 RLSVYPL 359
Cdd:pfam00158 161 RLNVIPI 167
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
162-499 |
9.30e-93 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 291.78 E-value: 9.30e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 162 ERINQLARGFEDQRQLAEVYKRAAggrapreLIGQSAVHQRMQQEIELV-GNSPLTVLVMGETGVGKELVAESIHLHSPR 240
Cdd:NF038308 157 SRYDALAQRFAREQAEAVSFLKSG-------IATRNAAFNRLIEQIERVaLRSRAPILLTGPTGAGKSFLARRIYELKKR 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 241 AHK---PLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRV 317
Cdd:NF038308 230 RHQvsgPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPV 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 318 GADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFL-----EENRVRMGLRGLR 392
Cdd:NF038308 310 GSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIEPNLDYELdrfarELGRQVRFNKEAR 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 393 LSAEAQRLLLAHPWPGNVRELEHLISRAVLKALSAhpqkpRILT--VEGSALGLDGLASATPLPTAEKALSAAVQGAGLk 470
Cdd:NF038308 390 FRYLAFATSPEALWPGNFRELSASVTRMATLADGG-----RITEelVEEEIARLRAAWQSAPAAADDDALADLLGGEQL- 463
|
330 340 350
....*....|....*....|....*....|..
gi 950599996 471 ASVDAF---QRSLIVDCLERHQGRwAEVARDL 499
Cdd:NF038308 464 AELDLFdrvQLAAVLRVCRQSRSL-SAAGRRL 494
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
194-355 |
3.81e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.59 E-value: 3.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 194 IGQSAVHQRMQQEIELvgNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVkgafsgA 273
Cdd:cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 274 VNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGadqehHVDVRIIAATNRDLaeevrSGRFRADLYHR 353
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPL-----LGDLDRALYDR 142
|
..
gi 950599996 354 LS 355
Cdd:cd00009 143 LD 144
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
213-354 |
1.44e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 62.39 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 213 SPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVES---ELFGHVKGAFSGAVNGRsGRFELA---DG 286
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKP 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 287 GTLFLDEVGELPLSVQSKLLRVLQSgqlQRVGADQEHHVDVRIIAATNR--DLAEEVRSGRFRADLYHRL 354
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
4-500 |
0e+00 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 824.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 4 PLLRELIPLVSDLSRELPDEERYRRLLCSLRHWLPCDATALLRLEGDVLIPLAVDGLSPDALGRRFRVSEHPRFEALLAS 83
Cdd:PRK05022 1 FSLDALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDVLGRRFALEEHPRLEAILRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 84 DGPLRFAADCDLPDPYDGLVDGH-GALEVHDCLGCVLSVQGRPWGLITLDSLDPSSFGSVDLDNLQAFASLAAATVMAGE 162
Cdd:PRK05022 81 GDPVRFPADSELPDPYDGLIPGVqESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDEELRALAALAAATLRNAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 163 RINQLARGFEDQRQLAEVYKRAAGGraPRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAH 242
Cdd:PRK05022 161 LIEQLESQAELPQDVAEFLRQEALK--EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRAD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 243 KPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQE 322
Cdd:PRK05022 239 KPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRS 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 323 HHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLL 402
Cdd:PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 403 AHPWPGNVRELEHLISRAVLKALSAHPQkpRILTVEGSALGLDGlASATPLPTAEkALSAAVQGAGLKASVDAFQRSLIV 482
Cdd:PRK05022 399 AYDWPGNVRELEHVISRAALLARARGAG--RIVTLEAQHLDLPA-EVALPPPEAA-AAPAAVVSQNLREATEAFQRQLIR 474
|
490
....*....|....*...
gi 950599996 483 DCLERHQGRWAEVARDLG 500
Cdd:PRK05022 475 QALAQHQGNWAAAARALE 492
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
171-500 |
5.34e-137 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 403.00 E-value: 5.34e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 171 FEDQRQLAEVYKRAAGGRAPRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNC 250
Cdd:COG3829 118 LERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNC 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 251 AALPEMLVESELFGHVKGAFSGAV-NGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRI 329
Cdd:COG3829 198 AAIPENLLESELFGYEKGAFTGAKkGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRI 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 330 IAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGN 409
Cdd:COG3829 278 IAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGN 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 410 VRELEHLISRAVlkalsahpqkpriLTVEGSALGLDGLASATPLPTAEkalSAAVQGAGLKASVDAFQRSLIVDCLERHQ 489
Cdd:COG3829 358 VRELENVIERAV-------------VLSEGDVITPEHLPEYLLEEAEA---ASAAEEGSLKEALEEVEKELIEEALEKTG 421
|
330
....*....|.
gi 950599996 490 GRWAEVARDLG 500
Cdd:COG3829 422 GNKSKAAKALG 432
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
173-500 |
1.64e-116 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 349.26 E-value: 1.64e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 173 DQRQLAEVYKRAAGGR-------APRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPL 245
Cdd:COG2204 106 DLEELLAAVERALERRrlrrenaEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 246 ISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHV 325
Cdd:COG2204 186 VAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPV 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 326 DVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRgLRLSAEAQRLLLAHP 405
Cdd:COG2204 266 DVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKP-VKLSPEALEALLAYD 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 406 WPGNVRELEHLISRAVLKAlsahpqkpriltvEGSALGLDGLASAtplptaekalsaavqgaglkasVDAFQRSLIVDCL 485
Cdd:COG2204 345 WPGNVRELENVIERAVILA-------------DGEVITAEDLPEA----------------------LEEVERELIERAL 389
|
330
....*....|....*
gi 950599996 486 ERHQGRWAEVARDLG 500
Cdd:COG2204 390 EETGGNVSRAAELLG 404
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
147-501 |
2.29e-100 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 312.03 E-value: 2.29e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 147 LQAFASLAAATV-----MAGERINQLARGFEDQRQLAEVYKRAAGGRAPRE--LIGQSAVHQRMQQEIELVGNSPLTVLV 219
Cdd:TIGR01817 145 LEMVANLIGQTVrlhrlVAQRRERLIAEAVQLSKQLRDKAPEIARRRSGKEdgIIGKSPAMRQVVDQARVVARSNSTVLL 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 220 MGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPL 299
Cdd:TIGR01817 225 RGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 300 SVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFL 379
Cdd:TIGR01817 305 AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 380 EENRVRMGlRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKALSAH-------------PQKPRILTVEGSALGLDG 446
Cdd:TIGR01817 385 EKFNRENG-RPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTitrsdfscqsgqcLSPMLAKTCPHGHISIDP 463
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 950599996 447 LASATPLPT-AEKALSAAVQGAGLKASvdafQRSLIVDCLERHQGRWAEVARDLGK 501
Cdd:TIGR01817 464 LAGTTPPHSpASAALPGEPGLSGPTLS----ERERLIAALEQAGWVQAKAARLLGM 515
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
119-500 |
2.50e-99 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 311.83 E-value: 2.50e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 119 LSVQGRPWGLITLDSLDPSSFGSVDLDNLQAFASLAAATVMAGERINQLARGFEDQRQLAEVYKRAAGGRAPRELIGQSA 198
Cdd:COG3284 249 LGLADAALLGRPLEELFGLDLEALPDGARRAPASPRPLRLRDGRRLGALLRLRPARRAARAAPAGAPAPAALAALAGGDP 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 199 VHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGA-VNGR 277
Cdd:COG3284 329 AMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGArRKGR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 278 SGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVY 357
Cdd:COG3284 409 PGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGL 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 358 PLLVPALRERGrDVLLLAGYFLEenRVRMGLRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKAlsahpqkpriltv 437
Cdd:COG3284 489 TLTLPPLRERE-DLPALIEHLLR--ELAAGRGPLRLSPEALALLAAYPWPGNVRELRNVLRTALALA------------- 552
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 950599996 438 EGSALGLDGLasatPLPTAEKALSAAVQGAGLKASVDAFQRSLIVDCLERHQGRWAEVARDLG 500
Cdd:COG3284 553 DGGVITVEDL----PDELRAELAAAAPAAAAPLTSLEEAERDAILRALRACGGNVSAAARALG 611
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
193-359 |
4.56e-99 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 295.46 E-value: 4.56e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 193 LIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSG 272
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 273 AVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYH 352
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 950599996 353 RLSVYPL 359
Cdd:pfam00158 161 RLNVIPI 167
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
162-499 |
9.30e-93 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 291.78 E-value: 9.30e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 162 ERINQLARGFEDQRQLAEVYKRAAggrapreLIGQSAVHQRMQQEIELV-GNSPLTVLVMGETGVGKELVAESIHLHSPR 240
Cdd:NF038308 157 SRYDALAQRFAREQAEAVSFLKSG-------IATRNAAFNRLIEQIERVaLRSRAPILLTGPTGAGKSFLARRIYELKKR 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 241 AHK---PLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRV 317
Cdd:NF038308 230 RHQvsgPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPV 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 318 GADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFL-----EENRVRMGLRGLR 392
Cdd:NF038308 310 GSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIEPNLDYELdrfarELGRQVRFNKEAR 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 393 LSAEAQRLLLAHPWPGNVRELEHLISRAVLKALSAhpqkpRILT--VEGSALGLDGLASATPLPTAEKALSAAVQGAGLk 470
Cdd:NF038308 390 FRYLAFATSPEALWPGNFRELSASVTRMATLADGG-----RITEelVEEEIARLRAAWQSAPAAADDDALADLLGGEQL- 463
|
330 340 350
....*....|....*....|....*....|..
gi 950599996 471 ASVDAF---QRSLIVDCLERHQGRwAEVARDL 499
Cdd:NF038308 464 AELDLFdrvQLAAVLRVCRQSRSL-SAAGRRL 494
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
142-487 |
2.99e-90 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 285.16 E-value: 2.99e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 142 VDLDNLQAFASLAAATVM------AGERINQL----ARGFEdqrqlaevykraaggraprELIGQSavhQRMQQEIE--- 208
Cdd:COG3283 164 IYLPDEEGKSILAGAVVTlksaarLGEQLQALqvndDSGFD-------------------HIVASS---PKMRQVIRqak 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 209 --LVGNSPLtvLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADG 286
Cdd:COG3283 222 kmAMLDAPL--LIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAFGNAREGKKGLFEQANG 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 287 GTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRE 366
Cdd:COG3283 300 GTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 367 RGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVlkALSahpqkpriltvEGSALGLDG 446
Cdd:COG3283 380 RKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAV--SLL-----------EGDELTPED 446
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 950599996 447 LasATPLPTAEKALSAAVQGAGLKASVDAFQRSLivdcLER 487
Cdd:COG3283 447 L--QLPEYAASAGLLDDLLEGSLDEIVKRFERSL----LRR 481
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
172-450 |
8.23e-87 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 273.93 E-value: 8.23e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 172 EDQRQLaevyKRAAGGRAPRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCA 251
Cdd:TIGR02915 124 TENRRL----QSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCA 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 252 ALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIA 331
Cdd:TIGR02915 200 AIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVC 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 332 ATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVR 411
Cdd:TIGR02915 280 ATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVR 359
|
250 260 270
....*....|....*....|....*....|....*....
gi 950599996 412 ELEHLISRAVLkaLSAHPQkpriltVEGSALGLDGLASA 450
Cdd:TIGR02915 360 ELENKVKRAVI--MAEGNQ------ITAEDLGLDARERA 390
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
192-500 |
5.66e-86 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 272.38 E-value: 5.66e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 192 ELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFS 271
Cdd:TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFT 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 272 GAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLY 351
Cdd:TIGR01818 215 GANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLF 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 352 HRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVRELEHLISRavLKALSahPQK 431
Cdd:TIGR01818 295 HRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRW--LTVMA--SGD 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 432 PRILTVEGSALGLDGLASATPLPTAEKALSAAVQG----------AGLKASV-DAFQRSLIVDCLERHQGRWAEVARDLG 500
Cdd:TIGR01818 371 EVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAwakqalsrgeQGLLDRAlPEFERPLLEAALQHTRGHKQEAAALLG 450
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
205-500 |
9.07e-86 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 271.72 E-value: 9.07e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 205 QEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELA 284
Cdd:PRK11361 157 KDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 285 DGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPAL 364
Cdd:PRK11361 237 NEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 365 RERGRDVLLLAGYFLE----ENRVRMglrgLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKA----LSAHPQKPRILT 436
Cdd:PRK11361 317 RDRREDISLLANHFLQkfssENQRDI----IDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNsgpiIFSEDLPPQIRQ 392
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 950599996 437 VEGSALGldglasATPLPTAEKalsaavqgaGLKASVDAFQRSLIVDCLERHQGRWAEVARDLG 500
Cdd:PRK11361 393 PVCNAGE------VKTAPVGER---------NLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLG 441
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
193-495 |
1.75e-85 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 266.47 E-value: 1.75e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 193 LIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSG 272
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 273 AVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYH 352
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 353 RLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLR-GLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKALSAHPQK 431
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPlFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEAPI 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 950599996 432 PRILT-------VEGSALGLDGLASATPLPTAEKALSAAVQGAGLKASVDAFQRSLIVDCLER---HQGRWAEV 495
Cdd:TIGR02974 241 DEIIIdpfaspwRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQDYEIELLQQALAEaqfNQRKAAEL 314
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
193-500 |
1.23e-84 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 268.44 E-value: 1.23e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 193 LIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSG 272
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 273 AVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYH 352
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 353 RLSVYPLLVPALRERGRDVLLLAGYFLEE--NRVRMGLRGlrLSAEAQRLLLAHPWPGNVRELEHLISRAVLKALSAHPQ 430
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRfaERNRKAVKG--FTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYIS 378
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 950599996 431 KPRI-LTVEGSALGLDGLASATPLPTAEKalsaavqgaglkasvdafqrSLIVDCLERHQGRWAEVARDLG 500
Cdd:PRK10365 379 ERELpLAIASTPIPLGQSQDIQPLVEVEK--------------------EVILAALEKTGGNKTEAARQLG 429
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
41-500 |
2.98e-83 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 261.32 E-value: 2.98e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 41 ATALLRLEGDVLIPLAVDGLSPDALGRRFRVSEHPRFEALLASDGPLRFAADCDLPDPYDGLVDGHGALEVHDCLGCVLS 120
Cdd:COG3604 3 LALRLLGLPLLLLLALALLLLVLLLLALLLRGDLLASALVLEESLELLALALSEALLAAQARQAALAARERQLFLGVPLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 121 VQGRPWGLITLDSLDPSSFGSVDLDNLQAFASLAAATVMagerinqlargfedqrqlaevykraaggrapreligqsavh 200
Cdd:COG3604 83 VGGEVLGVLTLDSRRPGAFSEEDLRLLETLASLAAVAIL----------------------------------------- 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 201 qrmqqeielvgnspltvlvmGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESelfghvkgafsgavngrsgr 280
Cdd:COG3604 122 --------------------GETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------- 161
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 281 feladggtlfldevgelplsvqskllrvLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLL 360
Cdd:COG3604 162 ----------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIR 213
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 361 VPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKAlsahpqkpriltvEGS 440
Cdd:COG3604 214 LPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILA-------------EGG 280
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 441 ALGLDGLASATplptaekalsaavqgaglKASVDAFQRSLIVDCLERHQGRWAEVARDLG 500
Cdd:COG3604 281 VLDADDLAPGS------------------REALEEVEREHILEALERTGGNIAGAARLLG 322
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
170-500 |
3.06e-78 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 254.64 E-value: 3.06e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 170 GFEDQRQLAEVYKRAAGGRAPR----------ELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIH---- 235
Cdd:PRK15424 188 AFEDALDMTRMTLRHNTHYATRnalrtryvlgDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyf 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 236 ----LHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGAVNG-RSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQ 310
Cdd:PRK15424 268 arhdARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 311 SGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLeenRVRMGLRG 390
Cdd:PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL---KQSLAALS 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 391 LRLSAEAQR-------LLLAHPWPGNVRELEHLISRAVLkALSAHPQKPriLTVEGSALGLDGLASATPLPTAEKALSAA 463
Cdd:PRK15424 425 APFSAALRQglqqcetLLLHYDWPGNVRELRNLMERLAL-FLSVEPTPD--LTPQFLQLLLPELARESAKTPAPRLLAAT 501
|
330 340 350
....*....|....*....|....*....|....*..
gi 950599996 464 VQgaglkasvdafqrslivDCLERHQGRWAEVARDLG 500
Cdd:PRK15424 502 LQ-----------------QALERFNGDKTAAANYLG 521
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
127-422 |
3.15e-77 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 255.53 E-value: 3.15e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 127 GLITLDSLDPSSFGSVDLDNLQAFA---SLAAATVMAGERINQLARGFEDQ-----RQLAEVYKRAAggraprELIGQSA 198
Cdd:PRK15429 310 GVLKLAQCEEKVFTTTNLKLLRQIAervAIAVDNALAYQEIHRLKERLVDEnlaltEQLNNVDSEFG------EIIGRSE 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 199 VHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRS 278
Cdd:PRK15429 384 AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 279 GRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYP 358
Cdd:PRK15429 464 GRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 543
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 950599996 359 LLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVL 422
Cdd:PRK15429 544 IHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 607
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
192-500 |
1.86e-75 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 245.17 E-value: 1.86e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 192 ELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFS 271
Cdd:PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 272 GAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLY 351
Cdd:PRK10923 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 352 HRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKALSAH--- 428
Cdd:PRK10923 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEvli 378
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 950599996 429 ---PQKPRILTVEGSALGLDGLASATPLPT-AEKALSAAVQGAgLKASVDAFQRSLIVDCLERHQGRWAEVARDLG 500
Cdd:PRK10923 379 qdlPGELFESTVPESTSQMQPDSWATLLAQwADRALRSGHQNL-LSEAQPELERTLLTTALRHTQGHKQEAARLLG 453
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
185-459 |
1.96e-73 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 239.35 E-value: 1.96e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 185 AGGRAPRE-LIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELF 263
Cdd:PRK15115 127 ATDERWREaIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELF 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 264 GHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRS 343
Cdd:PRK15115 207 GHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMAR 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 344 GRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVlk 423
Cdd:PRK15115 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV-- 364
|
250 260 270
....*....|....*....|....*....|....*..
gi 950599996 424 ALSAHPqkpriltVEGSALGLDGLASA-TPLPTAEKA 459
Cdd:PRK15115 365 ALTSSP-------VISDALVEQALEGEnTALPTFVEA 394
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
217-421 |
2.58e-73 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 234.95 E-value: 2.58e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 217 VLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGE 296
Cdd:PRK11608 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELAT 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 297 LPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAG 376
Cdd:PRK11608 112 APMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAE 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 950599996 377 YFleenRVRMgLRGLRL------SAEAQRLLLAHPWPGNVRELEHLISRAV 421
Cdd:PRK11608 192 HF----AIQM-CRELGLplfpgfTERARETLLNYRWPGNIRELKNVVERSV 237
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
190-500 |
2.60e-73 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 241.30 E-value: 2.60e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 190 PRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGA 269
Cdd:TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGA 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 270 FSGAVNG-RSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRA 348
Cdd:TIGR02329 291 FTGARRGgRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 349 DLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGL----RGLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKa 424
Cdd:TIGR02329 371 DLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLpdseAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALE- 449
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 950599996 425 LSAHPQKprILTVEGSALGLDGLASATpLPTAEKALSAAVQGAGLKASVDAfqrslivdCLERHQGRWAEVARDLG 500
Cdd:TIGR02329 450 LSAMPAG--ALTPDVLRALAPELAEAS-GKGKTSALSLRERSRVEALAVRA--------ALERFGGDRDAAAKALG 514
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
198-433 |
3.93e-69 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 229.96 E-value: 3.93e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 198 AVHQRMQQEIE-----LVGNSPLtvLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVKGAFSG 272
Cdd:PRK10820 208 AVSPKMRQVVEqarklAMLDAPL--LITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 273 AVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYH 352
Cdd:PRK10820 286 ALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 353 RLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLLAHPWPGNVRELEHLISRAvLKALSAHPQKP 432
Cdd:PRK10820 366 RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRA-LTQLEGYELRP 444
|
.
gi 950599996 433 R 433
Cdd:PRK10820 445 Q 445
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
211-428 |
5.30e-46 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 169.86 E-value: 5.30e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 211 GNSPltVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGhvkGAFSGAVNGRSGRFELADGGTLF 290
Cdd:PRK11388 347 SSFP--VLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRTDSENGRLSKFELAHGGTLF 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 291 LDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRD 370
Cdd:PRK11388 422 LEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRED 501
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 950599996 371 VLLLAGYFLEENRVRMGLRgLRLSAEAQRLLLAHPWPGNVRELEHLISRAVLKALSAH 428
Cdd:PRK11388 502 IPALVNNKLRSLEKRFSTR-LKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGR 558
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
202-419 |
4.13e-42 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 157.30 E-value: 4.13e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 202 RMQQEIELVG-NSPLTVLVMGETGVGKELVAESIHLHSPRAHK---PLISLNCAALPEMLVESELFGHVKGAFSGAVNGR 277
Cdd:COG4650 195 RLIEQIERVAiRSRAPILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDR 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 278 SGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQEHHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVY 357
Cdd:COG4650 275 AGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLW 354
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 950599996 358 PLLVPALRERGRDVLLLAGYFLEENRVRMGLRgLRLSAEAQRLLLAH------PWPGNVRELEHLISR 419
Cdd:COG4650 355 TFRLPGLAERREDIEPNLDYELARFAREQGRR-VRFNKEARARYLAFatspeaLWSGNFRDLNASVTR 421
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
215-417 |
1.26e-32 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 132.15 E-value: 1.26e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 215 LTVLVMGETGVGKELVAESIH---LHSPR--AHKPLISLNCAAL---PEMLVeSELFGHVKGAFSGAVNGRSGRFELADG 286
Cdd:COG1221 131 LHTLILGPTGVGKSFFAELMYeyaIEIGVlpEDAPFVVFNCADYannPQLLM-SQLFGYVKGAFTGADKDKEGLIEKADG 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 287 GTLFLDEVGELPLSVQSKLLRVLQSGQLQRVG-ADQEHHVDVRIIAATnrdlAEEVRS---GRF-RadlyhRLsvyPLLV 361
Cdd:COG1221 210 GILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFAT----TEDPESsllKTFlR-----RI---PMVI 277
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 362 --PALRERGRD--VLLLAGYFLEENRvRMGLRgLRLSAEAQRLLLAHPWPGNVRELEHLI 417
Cdd:COG1221 278 klPSLEERSLEerLELIKHFFKEEAK-RLNKP-IKVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
194-355 |
3.81e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.59 E-value: 3.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 194 IGQSAVHQRMQQEIELvgNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESELFGHVkgafsgA 273
Cdd:cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 274 VNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGadqehHVDVRIIAATNRDLaeevrSGRFRADLYHR 353
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPL-----LGDLDRALYDR 142
|
..
gi 950599996 354 LS 355
Cdd:cd00009 143 LD 144
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
194-364 |
6.04e-15 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 71.60 E-value: 6.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 194 IGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVESelfghvkgafsga 273
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 274 vngrsgrfelADGGTLFLDEVGELPLSVQSKLLRVLQSgqlqrvgADQEHhvdVRIIAATNRDLAEEVRSGRFRADLYHR 353
Cdd:pfam14532 68 ----------AKGGTLYLKDIADLSKALQKGLLLLLAK-------AEGYR---VRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 950599996 354 LSVYPLLVPAL 364
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
213-354 |
1.44e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 62.39 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 213 SPLTVLVMGETGVGKELVAESIHLHSPRAHKPLISLNCAALPEMLVES---ELFGHVKGAFSGAVNGRsGRFELA---DG 286
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKP 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 287 GTLFLDEVGELPLSVQSKLLRVLQSgqlQRVGADQEHHVDVRIIAATNR--DLAEEVRSGRFRADLYHRL 354
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
23-158 |
3.65e-04 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 40.54 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 23 EERYRRLLCSLRHWLPCDATALLRLEGDVLIPLaVDGLSPDALGRRFRVSEHPRfeALLASDGPLRFAADCDLPDpYDGL 102
Cdd:pfam01590 3 EEILQTILEELRELLGADRCALYLPDADGLEYL-PPGARWLKAAGLEIPPGTGV--TVLRTGRPLVVPDAAGDPR-FLDP 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 950599996 103 VDGHGALEVHDCLGCVLSVQGRPWGLITLDSLDPsSFGSVDLDNLQAFASLAAATV 158
Cdd:pfam01590 79 LLLLRNFGIRSLLAVPIIDDGELLGVLVLHHPRP-PFTEEELELLEVLADQVAIAL 133
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
5-500 |
5.14e-03 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 39.41 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 5 LLRELIPLVSDLSRELPDEERYRRLLCSLRHWLPCDATALLRLEGD--VLIPLAVDGLSPDALgRRFRVSEHPRFEALlA 82
Cdd:COG2203 191 RLALLNEISQALRSALDLEELLQRILELAGELLGADRGAILLVDEDggELELVAAPGLPEEEL-GRLPLGEGLAGRAL-R 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 83 SDGPLRFAADCDLPDPYDGLVDGHGALEVHDCLGCVLSVQGRPWGLITLDSLDPSSFGSVDLDNLQAFASLAAatvMAGE 162
Cdd:COG2203 269 TGEPVVVNDASTDPRFAPSLRELLLALGIRSLLCVPLLVDGRLIGVLALYSKEPRAFTEEDLELLEALADQAA---IAIE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 163 RINQLARGFEDQRQLAEVYKRAAGGRAPRELIGQSAVHQRMQQEIELVGNSPLTVLVMGETGVGKELVAESIHLHSPRAH 242
Cdd:COG2203 346 RARLYEALEAALAALLQELALLRLLLDLELTLLRLRQLLLELLLALLLLLSLLGAELLLLLLDAADLSGLLALEGLLLLD 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 243 KPLISLNCAALPEMLVESELFGHVKGAFSGAVNGRSGRFELADGGTLFLDEVGELPLSVQSKLLRVLQSGQLQRVGADQE 322
Cdd:COG2203 426 LLLLLLLLRRILLLRVLRRLLLGDEEGLVLLLALAELELLEILELLVLLAVILLALALLAALLLLLLLLLALLALSALAV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 323 HHVDVRIIAATNRDLAEEVRSGRFRADLYHRLSVYPLLVPALRERGRDVLLLAGYFLEENRVRMGLRGLRLSAEAQRLLL 402
Cdd:COG2203 506 LASLLLALLLLLLLLLLLLLLGLLAALAADLLLLAAALLEDLLILLLVLLLERELLTLVGVLLLLGLSVLLIELALALIL 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950599996 403 AHPWPGNVRELEHLISRAVLKALSAHPQKPRILTVEGSALGLDGLASATPLPTAEKALSAAVQGAGLKASVDAFQRSLIV 482
Cdd:COG2203 586 ALALLELLLVAVGDLLLLERDLLLLLVLLVRLLLELLVVTLELTVLVVLAAVEDSALLLRLALALASLVLLRALLATELD 665
|
490
....*....|....*...
gi 950599996 483 DCLERHQGRWAEVARDLG 500
Cdd:COG2203 666 LILDSSLLLGLLLLGALL 683
|
|
| |
