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Conserved domains on  [gi|950600779|ref|WP_057460551|]
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MULTISPECIES: methyl-accepting chemotaxis protein [Pseudomonas syringae group]

Protein Classification

methyl-accepting chemotaxis protein( domain architecture ID 11435591)

methyl-accepting chemotaxis protein (MCP) is a bacterial receptor that mediates chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behavior

CATH:  1.10.287.950
Gene Ontology:  GO:0006935
PubMed:  18165013|20738376
SCOP:  4003862

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
117-652 2.11e-93

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


:

Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 298.47  E-value: 2.11e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 117 LTALRLKIDTLGINNTESSTRFTDVIKTLVGFSYSLEASIEDPQILRGLSSLNQFIDMKERAGRERVLLVQAFNQNRFDA 196
Cdd:COG0840    1 LLILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 197 PLLSRFSRNLGEFSGYLEAFQRWSPEVFKTKLNDVMQQPGSLEVARLQRLGFDTPMGDPLNVKPEDWFNLATVRIDMMAQ 276
Cdd:COG0840   81 LLALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 277 VEAELGQNVVGLATDARSSAQSSLYVAVATVVLMLIVVLWLasvIIRNIKVAVVDVNRTLMALSTRDLTARTRYIGKDEF 356
Cdd:COG0840  161 AALAALLEAAALALAAAALALALLAAALLALVALAIILALL---LSRSITRPLRELLEVLERIAEGDLTVRIDVDSKDEI 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 357 GEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEM 436
Cdd:COG0840  238 GQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAEL 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 437 SQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGRG 516
Cdd:COG0840  318 AEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRG 397

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 517 FAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQVAS 596
Cdd:COG0840  398 FAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAA 477

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 950600779 597 AAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLVGRFKV 652
Cdd:COG0840  478 ASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
117-652 2.11e-93

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 298.47  E-value: 2.11e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 117 LTALRLKIDTLGINNTESSTRFTDVIKTLVGFSYSLEASIEDPQILRGLSSLNQFIDMKERAGRERVLLVQAFNQNRFDA 196
Cdd:COG0840    1 LLILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 197 PLLSRFSRNLGEFSGYLEAFQRWSPEVFKTKLNDVMQQPGSLEVARLQRLGFDTPMGDPLNVKPEDWFNLATVRIDMMAQ 276
Cdd:COG0840   81 LLALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 277 VEAELGQNVVGLATDARSSAQSSLYVAVATVVLMLIVVLWLasvIIRNIKVAVVDVNRTLMALSTRDLTARTRYIGKDEF 356
Cdd:COG0840  161 AALAALLEAAALALAAAALALALLAAALLALVALAIILALL---LSRSITRPLRELLEVLERIAEGDLTVRIDVDSKDEI 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 357 GEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEM 436
Cdd:COG0840  238 GQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAEL 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 437 SQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGRG 516
Cdd:COG0840  318 AEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRG 397

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 517 FAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQVAS 596
Cdd:COG0840  398 FAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAA 477

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 950600779 597 AAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLVGRFKV 652
Cdd:COG0840  478 ASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 390-651 6.98e-66

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 217.15  E-value: 6.98e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   390 QSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEMSQRVNNSTVQGKTEIDNTIGLIQELSVQAEETS 469
Cdd:smart00283   1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   470 RIIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAKKTQDSTVSIQKMIANLQSGS 549
Cdd:smart00283  81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   550 ERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQVASAAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQT 629
Cdd:smart00283 161 NEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240

                          250       260
                   ....*....|....*....|..
gi 950600779   630 AVTSRELARLAEQQQGLVGRFK 651
Cdd:smart00283 241 SAAAEELSGLAEELDELVERFK 262
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 418-616 2.80e-53

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 181.28  E-value: 2.80e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 418 EMSATVKDVARSTTDAAEMSQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDELKGESNSISSVLDVIRGVADQTN 497
Cdd:cd11386    2 ELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQTN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 498 LLALNAAIEAARAGEQGRGFAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELL 577
Cdd:cd11386   82 LLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAF 161

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 950600779 578 EEIAEGIATISDRNIQVASAAEEQSLVAEEIHRNVDDIN 616
Cdd:cd11386  162 EEIVASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 434-619 4.25e-40

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 144.50  E-value: 4.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779  434 AEMSQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDelkgesnsissvldVIRGVADQTNLLALNAAIEAARAGEQ 513
Cdd:pfam00015   1 SDLAQLASEEAQDGGKEVANVVGQMEQIAQSSKKISDIIS--------------VIDEIAFQTNLLALNAAIEAARAGEQ 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779  514 GRGFAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQ 593
Cdd:pfam00015  67 GRGFAVVADEVRKLAERSAQAAKEIEALIIEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQE 146

                         170       180
                  ....*....|....*....|....*.
gi 950600779  594 VASAAEEQSLVAEEIHRNVDDINSLV 619
Cdd:pfam00015 147 IAAASDEQSAGIDQVNQAVARMDQVT 172
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
291-652 1.14e-33

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 135.85  E-value: 1.14e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 291 DARSSAQSSLYV--AVATVVLMLIVVLWLAsviirnIKVAVVD-VNR---TLMALSTRDLTARTRYIGKDEFGEISRNLD 364
Cdd:PRK15041 184 DNNASYSQAMWIlvGVMIVVLAVIFAVWFG------IKASLVApMNRlidSIRHIAGGDLVKPIEVDGSNEMGQLAESLR 257

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 365 NMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEMSQRVNNST 444
Cdd:PRK15041 258 HMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETA 337

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 445 VQGKTEIDNTIGLIQELSvqaeetsriidelkGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGRGFAVVADEV 524
Cdd:PRK15041 338 QRGGKVVDNVVQTMRDIS--------------TSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEV 403

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 525 RNLAKKTQDSTVSIQKMIanlqsgseraaasmQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQVASAAEEQSLV 604
Cdd:PRK15041 404 RNLAQRSAQAAREIKSLI--------------EDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRG 469

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 950600779 605 AEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLVGRFKV 652
Cdd:PRK15041 470 IDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRI 517
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
117-652 2.11e-93

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 298.47  E-value: 2.11e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 117 LTALRLKIDTLGINNTESSTRFTDVIKTLVGFSYSLEASIEDPQILRGLSSLNQFIDMKERAGRERVLLVQAFNQNRFDA 196
Cdd:COG0840    1 LLILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 197 PLLSRFSRNLGEFSGYLEAFQRWSPEVFKTKLNDVMQQPGSLEVARLQRLGFDTPMGDPLNVKPEDWFNLATVRIDMMAQ 276
Cdd:COG0840   81 LLALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 277 VEAELGQNVVGLATDARSSAQSSLYVAVATVVLMLIVVLWLasvIIRNIKVAVVDVNRTLMALSTRDLTARTRYIGKDEF 356
Cdd:COG0840  161 AALAALLEAAALALAAAALALALLAAALLALVALAIILALL---LSRSITRPLRELLEVLERIAEGDLTVRIDVDSKDEI 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 357 GEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEM 436
Cdd:COG0840  238 GQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAEL 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 437 SQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGRG 516
Cdd:COG0840  318 AEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRG 397

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 517 FAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQVAS 596
Cdd:COG0840  398 FAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAA 477

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 950600779 597 AAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLVGRFKV 652
Cdd:COG0840  478 ASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 390-651 6.98e-66

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 217.15  E-value: 6.98e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   390 QSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEMSQRVNNSTVQGKTEIDNTIGLIQELSVQAEETS 469
Cdd:smart00283   1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   470 RIIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAKKTQDSTVSIQKMIANLQSGS 549
Cdd:smart00283  81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   550 ERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQVASAAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQT 629
Cdd:smart00283 161 NEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240

                          250       260
                   ....*....|....*....|..
gi 950600779   630 AVTSRELARLAEQQQGLVGRFK 651
Cdd:smart00283 241 SAAAEELSGLAEELDELVERFK 262
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 418-616 2.80e-53

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 181.28  E-value: 2.80e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 418 EMSATVKDVARSTTDAAEMSQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDELKGESNSISSVLDVIRGVADQTN 497
Cdd:cd11386    2 ELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQTN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 498 LLALNAAIEAARAGEQGRGFAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELL 577
Cdd:cd11386   82 LLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAF 161

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 950600779 578 EEIAEGIATISDRNIQVASAAEEQSLVAEEIHRNVDDIN 616
Cdd:cd11386  162 EEIVASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 434-619 4.25e-40

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 144.50  E-value: 4.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779  434 AEMSQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDelkgesnsissvldVIRGVADQTNLLALNAAIEAARAGEQ 513
Cdd:pfam00015   1 SDLAQLASEEAQDGGKEVANVVGQMEQIAQSSKKISDIIS--------------VIDEIAFQTNLLALNAAIEAARAGEQ 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779  514 GRGFAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQ 593
Cdd:pfam00015  67 GRGFAVVADEVRKLAERSAQAAKEIEALIIEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQE 146

                         170       180
                  ....*....|....*....|....*.
gi 950600779  594 VASAAEEQSLVAEEIHRNVDDINSLV 619
Cdd:pfam00015 147 IAAASDEQSAGIDQVNQAVARMDQVT 172
NIT pfam08376
Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in ...
 57-286 8.05e-36

Nitrate and nitrite sensing; The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.


Pssm-ID: 462453 [Multi-domain]  Cd Length: 227  Bit Score: 134.54  E-value: 8.05e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   57 VTTIQRERGASGVFLGSG-GKSMQDKLKTFRQETDKAISEMRAQSTDGIPGP------DKVYRALDDLTALRLKIDTLGI 129
Cdd:pfam08376   1 VHALQKERGLSAGYLASGgGGRFAAELAAQRAATDAALAALRAALAELALPArladrlAALLRALDQLPALRRQVDAGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779  130 NNTESSTRFTDVIKTLVGFSYSLEASIEDPQILRGLSSLNQFIDMKERAGRERVLLVQAFNQNRFDAPLLSRFSRNLGEF 209
Cdd:pfam08376  81 SALEALAAYTELIAALLDLVDELAAGSPDPELARQLRALAALLRAKEAAGQERALLAAALAAGRFTAAEYRRFLSLVAAQ 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 950600779  210 SGYLEAFQRWSPEVFKTKLNDVMQQPGSLEVARLQRLGFDtpmgdplnvkPEDWFNLATVRIDMMAQVEAELGQNVV 286
Cdd:pfam08376 161 RAALAEFRAAATPEQRALYDATVTGPAVAAAERLRDRLVD----------AAAWFAASTARIDLLREVEDRLADDLA 227
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
291-652 1.14e-33

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 135.85  E-value: 1.14e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 291 DARSSAQSSLYV--AVATVVLMLIVVLWLAsviirnIKVAVVD-VNR---TLMALSTRDLTARTRYIGKDEFGEISRNLD 364
Cdd:PRK15041 184 DNNASYSQAMWIlvGVMIVVLAVIFAVWFG------IKASLVApMNRlidSIRHIAGGDLVKPIEVDGSNEMGQLAESLR 257

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 365 NMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEMSQRVNNST 444
Cdd:PRK15041 258 HMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETA 337

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 445 VQGKTEIDNTIGLIQELSvqaeetsriidelkGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQGRGFAVVADEV 524
Cdd:PRK15041 338 QRGGKVVDNVVQTMRDIS--------------TSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEV 403

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 525 RNLAKKTQDSTVSIQKMIanlqsgseraaasmQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQVASAAEEQSLV 604
Cdd:PRK15041 404 RNLAQRSAQAAREIKSLI--------------EDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRG 469

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 950600779 605 AEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLVGRFKV 652
Cdd:PRK15041 470 IDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRI 517
PRK15048 PRK15048
methyl-accepting chemotaxis protein II; Provisional
 275-653 2.76e-33

methyl-accepting chemotaxis protein II; Provisional


Pssm-ID: 185008 [Multi-domain]  Cd Length: 553  Bit Score: 134.75  E-value: 2.76e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 275 AQVEAELGQNVVGLATDARSSAQSSLYVAVATVVLMLIVVlWLAsvIIRNIKVAVVDVNRTLMALSTRDLTARTRYIGKD 354
Cdd:PRK15048 169 ALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVA-WYG--IRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRS 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 355 EFGEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAA 434
Cdd:PRK15048 246 EMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQAS 325

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 435 EMSQRVNNSTVQGKTEIDNTIGLIQELSvqaeetsriidelkGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQG 514
Cdd:PRK15048 326 QLAQSASDTAQHGGKVVDGVVKTMHEIA--------------DSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQG 391

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 515 RGFAVVADEVRNLAKKTQDSTVSIQKMIanlqsgseraaasmQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQV 594
Cdd:PRK15048 392 RGFAVVAGEVRNLASRSAQAAKEIKALI--------------EDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEI 457

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 950600779 595 ASAAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLVGRFKVS 653
Cdd:PRK15048 458 ASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLA 516
PRK09793 PRK09793
methyl-accepting chemotaxis protein IV;
278-652 2.30e-32

methyl-accepting chemotaxis protein IV;


Pssm-ID: 182079 [Multi-domain]  Cd Length: 533  Bit Score: 131.73  E-value: 2.30e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 278 EAELGQNVVGLATDARSSAQSSLYVAVATVVLMLIVV----LWLASVIIRNIKVavvdVNRTLMALSTRDLTARTRYIGK 353
Cdd:PRK09793 167 QLEINHVLEAASAQSQRNYQISALVFISMIIVAAIYIssalWWTRKMIVQPLAI----IGSHFDSIAAGNLARPIAVYGR 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 354 DEFGEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDA 433
Cdd:PRK09793 243 NEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQA 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 434 AEMSQRVNNSTVQGkteidntigliqelSVQAEETSRIIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAARAGEQ 513
Cdd:PRK09793 323 SELAKNAATTAQAG--------------GVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQ 388

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 514 GRGFAVVADEVRNLAKKTQDSTVSIQKMIanlqsgseraaasmQETLGKAQEGASNVVRAGELLEEIAEGIATISDRNIQ 593
Cdd:PRK09793 389 GRGFAVVAGEVRNLASRSAQAAKEIKGLI--------------EESVNRVQQGSKLVNNAAATMTDIVSSVTRVNDIMGE 454

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 950600779 594 VASAAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLVGRFKV 652
Cdd:PRK09793 455 IASASEEQRRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFTL 513
HAMP COG2770
HAMP domain [Signal transduction mechanisms];
110-647 6.04e-05

HAMP domain [Signal transduction mechanisms];


Pssm-ID: 442051 [Multi-domain]  Cd Length: 631  Bit Score: 46.26  E-value: 6.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 110 VYRALDDLTALRLKIDTLGINNTESSTRFTDVIKTLVGFSYSLEASIEDPQILRGLSSLNQFIDMKERAGRERVLLVQAF 189
Cdd:COG2770   26 LVLALISLRLLLALLLLLLLLLALLLLLLLLLLLLLAALVLLALLLAAALLLLLLLLSLVALAALLLALLLLLLLALLLL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 190 NQNRFDAPLLSRFSRNLGEFSGYLEAFQRwSPEVFKTKLNDVMQQPGSLEVARLQRLGFDTPMGDPLNVKPEDWFNLATV 269
Cdd:COG2770  106 LAALLLLLLLAALALLLLLLLLLAALLAL-LLALALLALLLGLAAARLLLAALLALAAALALALGAGELLLLADLAAAIA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 270 RIDMMAQVEAELGQNVVGLATDARSSAQSSLYVAVATVVLMLIVVLWLASVIIRNIKvavvDVNRTLMALSTRDLTARTR 349
Cdd:COG2770  185 ALLAALLLLLLGGLLLVVLLEAALAALLLLLLLALLALLLALLLALLLARRITRPLR----RLAEAARRIAAGDLDVRIP 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 350 YIGKDEFGEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARS 429
Cdd:COG2770  261 VSRKDEIGELARAFNRMADSLRESIEEAEEEEELAEAELARLLEALLELLLALLLLLLALLLLAAAALLLELLLLLLLAL 340

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 430 TTDAAEMSQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDELKGESNSISSVLDVIRGVADQTNLLALNAAIEAAR 509
Cdd:COG2770  341 LLLLLLAADLLLALALAALLLLLALELLLEAELLVLLALEALALEAELAAVLALLAALAAALLLLELALEELVLALLALA 420

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 510 AGEQGRGFAVVADEVRNLAKKTQDSTVSIQKMIANLQSGSERAAASMQETLGKAQEGASNVVRAGELLEEIAEGIATISD 589
Cdd:COG2770  421 LLALAAAAAAAEAAAAALELAAAAIAAAAAAEAEGGLAELEAEELVAAAEALLLLAALLLLAALGALELLLLEEEEEAGA 500

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 950600779 590 RNIQVASAAEEQSLVAEEIHRNVDDINSLVIQVSAGAEQTAVTSRELARLAEQQQGLV 647
Cdd:COG2770  501 AAEELAEELLLLEGLLLLLLLEAEALEVAEELLELEEAALLLAAAAELAALLALLLAL 558
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 367-490 1.23e-04

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 44.20  E-value: 1.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   367 AHQISEVISEIGSATAQVATAAEQSSAVALQTNQNVAQQRQGTDQVATAISEMSATVKDVARSTTDAAEMSQRVNNStvq 446
Cdd:smart00283 146 AKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAA--- 222

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 950600779   447 gkteIDNTIGLIQELSVQAEETSRIIDELKGESNSISSVLDVIR 490
Cdd:smart00283 223 ----IDEIAQVTQETAAMSEEISAAAEELSGLAEELDELVERFK 262
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
 294-377 8.06e-04

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 42.26  E-value: 8.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779 294 SSAQSSLYVAVATVVLM-LIVVLWLASVIIRNIKVAVVDVNRTLMALSTRDLTARTRYIGKDEFGEISRNLDNMAHQISE 372
Cdd:COG5000    1 SGLQILFLLLLLLIALLlLLLALWLALLLARRLTRPLRRLAEATRAVAAGDLSVRLPVTGDDEIGELARAFNRMTDQLKE 80


                 ....*
gi 950600779 373 VISEI 377
Cdd:COG5000   81 QREEL 85
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 342-476 7.77e-03

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 38.81  E-value: 7.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 950600779   342 RDLTARTryigKDEFGEISRNLDNMAHQISEVISEIGSATAQVATAAEQSSavalQTNQNVAQQRQGTDQVATAISEMSA 421
Cdd:smart00283 136 RKLAERS----AESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVE----ETGDALEEIVDSVEEIADLVQEIAA 207

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 950600779   422 TVKDVARSTTDAAEMSQRVNNSTVQGKTEIDNTIGLIQELSVQAEETSRIIDELK 476
Cdd:smart00283 208 ATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSGLAEELDELVERFK 262
HAMP pfam00672
HAMP domain;
320-372 9.50e-03

HAMP domain;


Pssm-ID: 459898 [Multi-domain]  Cd Length: 53  Bit Score: 34.91  E-value: 9.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 950600779  320 VIIRNIKVAVVDVNRTLMALSTRDLTARTRYIGKDEFGEISRNLDNMAHQISE 372
Cdd:pfam00672   1 LLARRILRPLRRLAEAARRIASGDLDVRLPVSGRDEIGELARAFNQMAERLRE 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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