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Conserved domains on  [gi|950782737|ref|WP_057510722|]
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MULTISPECIES: SdpI family protein [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SdpI super family cl38425
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 25-93 1.11e-03

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


The actual alignment was detected with superfamily member pfam13630:

Pssm-ID: 463940  Cd Length: 71  Bit Score: 34.85  E-value: 1.11e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 950782737   25 INHFWGFRTRKSKKNKENWMLAQKeygeqstkvfmytvFASFFWLLADIVFL----FLDNDTFMIVSVLLQSI 93
Cdd:pfam13630   4 INYFVGIRTPWTLKSEETWKKAHR--------------LAGKLWIIAGLLLLilalLLLILASTLLLLVVLLL 62
 
Name Accession Description Interval E-value
SdpI pfam13630
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 25-93 1.11e-03

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


Pssm-ID: 463940  Cd Length: 71  Bit Score: 34.85  E-value: 1.11e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 950782737   25 INHFWGFRTRKSKKNKENWMLAQKeygeqstkvfmytvFASFFWLLADIVFL----FLDNDTFMIVSVLLQSI 93
Cdd:pfam13630   4 INYFVGIRTPWTLKSEETWKKAHR--------------LAGKLWIIAGLLLLilalLLLILASTLLLLVVLLL 62
 
Name Accession Description Interval E-value
SdpI pfam13630
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 25-93 1.11e-03

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


Pssm-ID: 463940  Cd Length: 71  Bit Score: 34.85  E-value: 1.11e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 950782737   25 INHFWGFRTRKSKKNKENWMLAQKeygeqstkvfmytvFASFFWLLADIVFL----FLDNDTFMIVSVLLQSI 93
Cdd:pfam13630   4 INYFVGIRTPWTLKSEETWKKAHR--------------LAGKLWIIAGLLLLilalLLLILASTLLLLVVLLL 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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