|
Name |
Accession |
Description |
Interval |
E-value |
| Cna_B |
pfam05738 |
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ... |
1188-1274 |
1.21e-25 |
|
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.
Pssm-ID: 461726 [Multi-domain] Cd Length: 88 Bit Score: 101.94 E-value: 1.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1188 TVRKLWLDGNNEDKKRPEYIYVQLKQNGASFGSAVRLEASNGWRYTWDNLPKYKEvnSNEEHVYTVEEIgNIVGYASSI- 1266
Cdd:pfam05738 2 SVTKVWDDNNNQDGIRPESITVQLLANGQKVGVTKELTAANNWTYTFTDLPKYDE--NGKEITYTVEED-AVPGYTTTVd 78
|
90
....*....|
gi 951077764 1267 --NGMTITNT 1274
Cdd:pfam05738 79 akDGFTITNT 88
|
|
| CollagenBindB |
cd00222 |
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates ... |
1188-1275 |
1.37e-21 |
|
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.
Pssm-ID: 212461 [Multi-domain] Cd Length: 92 Bit Score: 90.82 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1188 TVRKLWLDGNNEDKKRPEYIYVQLKQNGASFGSAVRLEASNGWRYTWDNLPKYKEvnSNEEHVYTVEEIGnIVGYASSIN 1267
Cdd:cd00222 4 TVTKTWDDDDNQDGKRPESITVQLLANGKETGDTVTLTASNDWTYTFTNLPKYDE--NGKEITYTVKEVP-VPGYTTTVT 80
|
90
....*....|..
gi 951077764 1268 G----MTITNTR 1275
Cdd:cd00222 81 GddggFTITNTH 92
|
|
| Cna_B |
pfam05738 |
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ... |
1382-1492 |
2.14e-19 |
|
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.
Pssm-ID: 461726 [Multi-domain] Cd Length: 88 Bit Score: 84.22 E-value: 2.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1382 LTVKKVWVDYENAYHTRPEILEVRLYQNGAAFDEPVKLSEANQWTAGWKDLPvKADGSSPPYVYTVRELDQAGqpiedgs 1461
Cdd:pfam05738 1 VSVTKVWDDNNNQDGIRPESITVQLLANGQKVGVTKELTAANNWTYTFTDLP-KYDENGKEITYTVEEDAVPG------- 72
|
90 100 110
....*....|....*....|....*....|.
gi 951077764 1462 mavlstgytYTASYDssgtgtSANPFKITNT 1492
Cdd:pfam05738 73 ---------YTTTVD------AKDGFTITNT 88
|
|
| CollagenBindB |
cd00222 |
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates ... |
1381-1493 |
6.67e-18 |
|
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.
Pssm-ID: 212461 [Multi-domain] Cd Length: 92 Bit Score: 80.03 E-value: 6.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1381 DLTVKKVWVDYENAYHTRPEILEVRLYQNGAAFDEPVKLSEANQWTAGWKDLPVKADGSSpPYVYTVRELDQAGqpiedg 1460
Cdd:cd00222 2 DITVTKTWDDDDNQDGKRPESITVQLLANGKETGDTVTLTASNDWTYTFTNLPKYDENGK-EITYTVKEVPVPG------ 74
|
90 100 110
....*....|....*....|....*....|...
gi 951077764 1461 smavlstgytYTASYDSSGTGtsanpFKITNTL 1493
Cdd:cd00222 75 ----------YTTTVTGDDGG-----FTITNTH 92
|
|
| Fibro_Slime |
TIGR02148 |
fibro-slime domain; This model represents a conserved region of about 90 amino acids, shared ... |
1074-1171 |
3.79e-12 |
|
fibro-slime domain; This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Pssm-ID: 162730 Cd Length: 90 Bit Score: 63.88 E-value: 3.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1074 HNWFFGMRYDFEFVlgdYTGPMDYYFRGDDDFWLYVDGNLVsdVDLGGIHSAEGAYVDLKSWMQNKGflrdknQKHTMSV 1153
Cdd:TIGR02148 2 HNFHFCMKINAQFK---YVGGQYFEFRGDDDVWVFINNKLV--VDIGGQHPAVPGAVDLDTLGLKEG------KTYPFDI 70
|
90
....*....|....*...
gi 951077764 1154 FFIERGGTGSCCYMKFTL 1171
Cdd:TIGR02148 71 FYCERHTTGSNFRIRTSI 88
|
|
| CollagenBindB |
cd00222 |
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates ... |
1277-1377 |
2.36e-11 |
|
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.
Pssm-ID: 212461 [Multi-domain] Cd Length: 92 Bit Score: 61.54 E-value: 2.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1277 TDINVRKQWVGSAGE-----ESVQVGLFKDGSTrTGDIITLDSSNNWSGVWQNLPGYDSGGTKINYVPYEVDSSGHKVEa 1351
Cdd:cd00222 1 TDITVTKTWDDDDNQdgkrpESITVQLLANGKE-TGDTVTLTASNDWTYTFTNLPKYDENGKEITYTVKEVPVPGYTTT- 78
|
90 100
....*....|....*....|....*.
gi 951077764 1352 gstvrigegqyiVTYSSDHSVITNTY 1377
Cdd:cd00222 79 ------------VTGDDGGFTITNTH 92
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
271-440 |
9.50e-10 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 63.91 E-value: 9.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAV----PLATPSEA-----RPATPSQARPDIPSKPAPETPEEGAGIPQ----ETEPQEPADTGESQiQTS 337
Cdd:PRK10811 830 ACASPEMASGKVwiryPVVRPQDVqveeqREAEEVQVQPVVAEVPVAAAVEPVVSAPVveavAEVVEEPVVVAEPQ-PEE 908
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 338 IETLPTAAEEAPANPEETETQVSAESSpADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAApTMSSEPVQED 417
Cdd:PRK10811 909 VVVVETTHPEVIAAPVTEQPQVITESD-VAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVV-AQPAAPVVAE 986
|
170 180
....*....|....*....|...
gi 951077764 418 STEAEVTDQDQSEEMESESVVVI 440
Cdd:PRK10811 987 VAAEVETVTAVEPEVAPAQVPEA 1009
|
|
| Cna_B |
pfam05738 |
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ... |
1279-1376 |
1.09e-09 |
|
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.
Pssm-ID: 461726 [Multi-domain] Cd Length: 88 Bit Score: 56.87 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1279 INVRKQWVGSAGE-----ESVQVGLFKDGsTRTGDIITLDSSNNWSGVWQNLPGYDSGGTKINYVPYEVDSSGhkveags 1353
Cdd:pfam05738 1 VSVTKVWDDNNNQdgirpESITVQLLANG-QKVGVTKELTAANNWTYTFTDLPKYDENGKEITYTVEEDAVPG------- 72
|
90 100
....*....|....*....|....
gi 951077764 1354 tvrigegqYIVTYSSDHS-VITNT 1376
Cdd:pfam05738 73 --------YTTTVDAKDGfTITNT 88
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
271-434 |
1.41e-08 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 59.42 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPS-EARPATPSQARPDIPSKP------------APETPEEGAGIPQ------ETEPQEPADTGE 331
Cdd:COG3170 115 APAAAPAPAPAAPAAAAAaADQPAAEAAPAASGEYYPvrpgdtlwsiaaRPVRPSSGVSLDQmmvalyRANPDAFIDGNI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 332 SQIQT-SIETLPTAAEEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETTI---QASAEAEPTEAADTeAAP 407
Cdd:COG3170 195 NRLKAgAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPpaaAAAAGPVPAAAEDT-LSP 273
|
170 180
....*....|....*....|....*..
gi 951077764 408 TMSSEPVQEDSTEAEVTDQDQSEEMES 434
Cdd:COG3170 274 EVTAAAAAEEADALPEAAAELAERLAA 300
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
275-408 |
1.26e-06 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 52.46 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 275 PSEATPAVPLAT-PSEARPATPSQARPDIPSKPAPETPEEGAgipQETEPQEPADTGESQIQTSIETLPTAAEEAPANPE 353
Cdd:NF040712 190 PDFGRPLRPLATvPRLAREPADARPEEVEPAPAAEGAPATDS---DPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAP 266
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 951077764 354 ETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPT 408
Cdd:NF040712 267 AAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPA 321
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
309-473 |
8.33e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 50.76 E-value: 8.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 309 ETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPANPEETETQVSAESSPADtGENQTQAATETEPADSEETT 388
Cdd:TIGR00927 720 ETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE-DEGEIQAGEDGEMKGDEGAE 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 389 IQASAEAEPTEAADTE----AAPTMSSEPVQEDSTEAEVTDQDQSEEMESEsvvviesKAEDSSNEHKGTTAEDTRETQK 464
Cdd:TIGR00927 799 GKVEHEGETEAGEKDEhegqSETQADDTEVKDETGEQELNAENQGEAKQDE-------KGVDGGGGSDGGDSEEEEEEEE 871
|
....*....
gi 951077764 465 DADEEESED 473
Cdd:TIGR00927 872 EEEEEEEEE 880
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
275-426 |
1.21e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 50.30 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 275 PSEATPAVPLATPSEARPA-TPSQARPDIPSkPAPETPEEGAGIPQETEPQEPADTgesqiQTSIETLPTAAEEAPaNPE 353
Cdd:pfam05109 461 PASTGPTVSTADVTSPTPAgTTSGASPVTPS-PSPRDNGTESKAPDMTSPTSAVTT-----PTPNATSPTPAVTTP-TPN 533
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 951077764 354 ETETQVsAESSPADTGENQTQAATETEPADSEET---TIQASAEAEPTEAAdTEAAPTMSSEPVQEDSTEAEVTDQ 426
Cdd:pfam05109 534 ATSPTL-GKTSPTSAVTTPTPNATSPTPAVTTPTpnaTIPTLGKTSPTSAV-TTPTPNATSPTVGETSPQANTTNH 607
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
291-477 |
1.59e-03 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 43.36 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 291 RPATPSQarPDIPSK--PAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPANPEETETQVSAESSPADT 368
Cdd:NF033609 541 KPVVPEQ--PDEPGEiePIPEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDS 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 369 GENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVTDQDQSEEMESESVVVIESKAEDSS 448
Cdd:NF033609 619 ASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 698
|
170 180
....*....|....*....|....*....
gi 951077764 449 NEHKGTTAEDTRETQKDADEEESEDYTVD 477
Cdd:NF033609 699 DSDSDSDSDSDSDSDSDSDSDSDSDSDSD 727
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
271-376 |
2.31e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.06 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQE-PADTGESQIQTSIETLPTAAEEAP 349
Cdd:NF040712 218 EPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEaTRDAGEPPAPGAAETPEAAEPPAP 297
|
90 100
....*....|....*....|....*..
gi 951077764 350 ANPEETETQVSAESSPADTGENQTQAA 376
Cdd:NF040712 298 APAAPAAPAAPEAEEPARPEPPPAPKP 324
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Cna_B |
pfam05738 |
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ... |
1188-1274 |
1.21e-25 |
|
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.
Pssm-ID: 461726 [Multi-domain] Cd Length: 88 Bit Score: 101.94 E-value: 1.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1188 TVRKLWLDGNNEDKKRPEYIYVQLKQNGASFGSAVRLEASNGWRYTWDNLPKYKEvnSNEEHVYTVEEIgNIVGYASSI- 1266
Cdd:pfam05738 2 SVTKVWDDNNNQDGIRPESITVQLLANGQKVGVTKELTAANNWTYTFTDLPKYDE--NGKEITYTVEED-AVPGYTTTVd 78
|
90
....*....|
gi 951077764 1267 --NGMTITNT 1274
Cdd:pfam05738 79 akDGFTITNT 88
|
|
| CollagenBindB |
cd00222 |
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates ... |
1188-1275 |
1.37e-21 |
|
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.
Pssm-ID: 212461 [Multi-domain] Cd Length: 92 Bit Score: 90.82 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1188 TVRKLWLDGNNEDKKRPEYIYVQLKQNGASFGSAVRLEASNGWRYTWDNLPKYKEvnSNEEHVYTVEEIGnIVGYASSIN 1267
Cdd:cd00222 4 TVTKTWDDDDNQDGKRPESITVQLLANGKETGDTVTLTASNDWTYTFTNLPKYDE--NGKEITYTVKEVP-VPGYTTTVT 80
|
90
....*....|..
gi 951077764 1268 G----MTITNTR 1275
Cdd:cd00222 81 GddggFTITNTH 92
|
|
| Cna_B |
pfam05738 |
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ... |
1382-1492 |
2.14e-19 |
|
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.
Pssm-ID: 461726 [Multi-domain] Cd Length: 88 Bit Score: 84.22 E-value: 2.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1382 LTVKKVWVDYENAYHTRPEILEVRLYQNGAAFDEPVKLSEANQWTAGWKDLPvKADGSSPPYVYTVRELDQAGqpiedgs 1461
Cdd:pfam05738 1 VSVTKVWDDNNNQDGIRPESITVQLLANGQKVGVTKELTAANNWTYTFTDLP-KYDENGKEITYTVEEDAVPG------- 72
|
90 100 110
....*....|....*....|....*....|.
gi 951077764 1462 mavlstgytYTASYDssgtgtSANPFKITNT 1492
Cdd:pfam05738 73 ---------YTTTVD------AKDGFTITNT 88
|
|
| CollagenBindB |
cd00222 |
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates ... |
1381-1493 |
6.67e-18 |
|
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.
Pssm-ID: 212461 [Multi-domain] Cd Length: 92 Bit Score: 80.03 E-value: 6.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1381 DLTVKKVWVDYENAYHTRPEILEVRLYQNGAAFDEPVKLSEANQWTAGWKDLPVKADGSSpPYVYTVRELDQAGqpiedg 1460
Cdd:cd00222 2 DITVTKTWDDDDNQDGKRPESITVQLLANGKETGDTVTLTASNDWTYTFTNLPKYDENGK-EITYTVKEVPVPG------ 74
|
90 100 110
....*....|....*....|....*....|...
gi 951077764 1461 smavlstgytYTASYDSSGTGtsanpFKITNTL 1493
Cdd:cd00222 75 ----------YTTTVTGDDGG-----FTITNTH 92
|
|
| Fibro_Slime |
TIGR02148 |
fibro-slime domain; This model represents a conserved region of about 90 amino acids, shared ... |
1074-1171 |
3.79e-12 |
|
fibro-slime domain; This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Pssm-ID: 162730 Cd Length: 90 Bit Score: 63.88 E-value: 3.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1074 HNWFFGMRYDFEFVlgdYTGPMDYYFRGDDDFWLYVDGNLVsdVDLGGIHSAEGAYVDLKSWMQNKGflrdknQKHTMSV 1153
Cdd:TIGR02148 2 HNFHFCMKINAQFK---YVGGQYFEFRGDDDVWVFINNKLV--VDIGGQHPAVPGAVDLDTLGLKEG------KTYPFDI 70
|
90
....*....|....*...
gi 951077764 1154 FFIERGGTGSCCYMKFTL 1171
Cdd:TIGR02148 71 FYCERHTTGSNFRIRTSI 88
|
|
| CollagenBindB |
cd00222 |
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates ... |
1277-1377 |
2.36e-11 |
|
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.
Pssm-ID: 212461 [Multi-domain] Cd Length: 92 Bit Score: 61.54 E-value: 2.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1277 TDINVRKQWVGSAGE-----ESVQVGLFKDGSTrTGDIITLDSSNNWSGVWQNLPGYDSGGTKINYVPYEVDSSGHKVEa 1351
Cdd:cd00222 1 TDITVTKTWDDDDNQdgkrpESITVQLLANGKE-TGDTVTLTASNDWTYTFTNLPKYDENGKEITYTVKEVPVPGYTTT- 78
|
90 100
....*....|....*....|....*.
gi 951077764 1352 gstvrigegqyiVTYSSDHSVITNTY 1377
Cdd:cd00222 79 ------------VTGDDGGFTITNTH 92
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
271-440 |
9.50e-10 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 63.91 E-value: 9.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAV----PLATPSEA-----RPATPSQARPDIPSKPAPETPEEGAGIPQ----ETEPQEPADTGESQiQTS 337
Cdd:PRK10811 830 ACASPEMASGKVwiryPVVRPQDVqveeqREAEEVQVQPVVAEVPVAAAVEPVVSAPVveavAEVVEEPVVVAEPQ-PEE 908
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 338 IETLPTAAEEAPANPEETETQVSAESSpADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAApTMSSEPVQED 417
Cdd:PRK10811 909 VVVVETTHPEVIAAPVTEQPQVITESD-VAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVV-AQPAAPVVAE 986
|
170 180
....*....|....*....|...
gi 951077764 418 STEAEVTDQDQSEEMESESVVVI 440
Cdd:PRK10811 987 VAAEVETVTAVEPEVAPAQVPEA 1009
|
|
| Cna_B |
pfam05738 |
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ... |
1279-1376 |
1.09e-09 |
|
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.
Pssm-ID: 461726 [Multi-domain] Cd Length: 88 Bit Score: 56.87 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 1279 INVRKQWVGSAGE-----ESVQVGLFKDGsTRTGDIITLDSSNNWSGVWQNLPGYDSGGTKINYVPYEVDSSGhkveags 1353
Cdd:pfam05738 1 VSVTKVWDDNNNQdgirpESITVQLLANG-QKVGVTKELTAANNWTYTFTDLPKYDENGKEITYTVEEDAVPG------- 72
|
90 100
....*....|....*....|....
gi 951077764 1354 tvrigegqYIVTYSSDHS-VITNT 1376
Cdd:pfam05738 73 --------YTTTVDAKDGfTITNT 88
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
272-416 |
2.77e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 62.65 E-value: 2.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 272 PATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIP-QETEPQEPADTGESQIQTSIETLPTAAEEAPA 350
Cdd:PHA03247 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 951077764 351 NPEETETQVSAESSPADTGENQTQAAteTEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQE 416
Cdd:PHA03247 2785 RPAVASLSESRESLPSPWDPADPPAA--VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
271-434 |
1.41e-08 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 59.42 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPS-EARPATPSQARPDIPSKP------------APETPEEGAGIPQ------ETEPQEPADTGE 331
Cdd:COG3170 115 APAAAPAPAPAAPAAAAAaADQPAAEAAPAASGEYYPvrpgdtlwsiaaRPVRPSSGVSLDQmmvalyRANPDAFIDGNI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 332 SQIQT-SIETLPTAAEEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETTI---QASAEAEPTEAADTeAAP 407
Cdd:COG3170 195 NRLKAgAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPpaaAAAAGPVPAAAEDT-LSP 273
|
170 180
....*....|....*....|....*..
gi 951077764 408 TMSSEPVQEDSTEAEVTDQDQSEEMES 434
Cdd:COG3170 274 EVTAAAAAEEADALPEAAAELAERLAA 300
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
273-413 |
5.10e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 57.94 E-value: 5.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 273 ATPSEATPAVPLATP-SEARPATPSQARPDIPSKPAPETPEEG----AGIPQETEPQEPADTGESQIQTSIETLPTAAEE 347
Cdd:PRK07003 367 APGGGVPARVAGAVPaPGARAAAAVGASAVPAVTAVTGAAGAAlapkAAAAAAATRAEAPPAAPAPPATADRGDDAADGD 446
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 951077764 348 APAnPEETETQVSAESSPADTG-ENQTQAATETEPADSEETTiqASAEAEPTEAADTEAAPTMSSEP 413
Cdd:PRK07003 447 APV-PAKANARASADSRCDERDaQPPADSGSASAPASDAPPD--AAFEPAPRAAAPSAATPAAVPDA 510
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
271-421 |
1.30e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 56.78 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPA-----VPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPT-A 344
Cdd:PRK07003 372 VPARVAGAVPApgaraAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVpA 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 345 AEEAPANPEETETQVSAE--------SSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQE 416
Cdd:PRK07003 452 KANARASADSRCDERDAQppadsgsaSAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPE 531
|
....*
gi 951077764 417 DSTEA 421
Cdd:PRK07003 532 ARPPT 536
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
271-406 |
1.93e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 56.01 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPA 350
Cdd:PRK07003 411 APKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAF 490
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 951077764 351 NPEETETQVSAESSP-ADTGENQTQAATETEPADSEETtiqASAEAEPTEAADTEAA 406
Cdd:PRK07003 491 EPAPRAAAPSAATPAaVPDARAPAAASREDAPAAAAPP---APEARPPTPAAAAPAA 544
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
270-473 |
3.21e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 55.38 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 270 IAPATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAP 349
Cdd:PRK07764 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 350 ANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVqeDSTEAEVTDQDQS 429
Cdd:PRK07764 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPS--PAADDPVPLPPEP 745
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 951077764 430 EEMESESVVVIESKAEDSSNEHKGTTAEDTRETQKDADEEESED 473
Cdd:PRK07764 746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
287-415 |
3.25e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 55.50 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 287 PSEAR-PATPSQARPDIP-SKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPANP------EETETQ 358
Cdd:PRK14949 639 SSADRkPKTPPSRAPPASlSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPydrppwEEAPEV 718
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 951077764 359 VSAESSPADTGENQT-----QAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQ 415
Cdd:PRK14949 719 ASANDGPNNAAEGNLsesveDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQD 780
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
267-427 |
3.31e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 55.10 E-value: 3.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 267 ETDIAPATPSEATPAVPlATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAE 346
Cdd:PRK08691 408 QTASAAAMPSEGKTAGP-VSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLS 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 347 EAPA--------NPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAA----DTEAAPTMSSEPV 414
Cdd:PRK08691 487 EVPSenpiqatpNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAgggaDEEAEAGGIGGNN 566
|
170
....*....|...
gi 951077764 415 QEDSTEAEVTDQD 427
Cdd:PRK08691 567 TPSAPPPEFSTEN 579
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
271-436 |
3.62e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 3.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATP-SEATPAVPLATPSEARPATP----SQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSieTLPTAA 345
Cdd:PHA03247 2762 TTAGPpAPAPPAAPAAGPPRRLTRPAvaslSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS--AQPTAP 2839
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 346 EEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVTD 425
Cdd:PHA03247 2840 PPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
|
170
....*....|.
gi 951077764 426 QDQSEEMESES 436
Cdd:PHA03247 2920 QPQPPPPPQPQ 2930
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
271-421 |
4.02e-07 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 55.09 E-value: 4.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPDIPS-----KPAPE--TPEEGAGIPQE--TEP-QEPADTGESQIQTSIET 340
Cdd:PRK10263 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTgepviAPAPEgyPQQSQYAQPAVqyNEPlQQPVQPQQPYYAPAAEQ 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 341 LPTAAEEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAP-------TMSSEP 413
Cdd:PRK10263 415 PAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPqpveqqpVVEPEP 494
|
....*...
gi 951077764 414 VQEDSTEA 421
Cdd:PRK10263 495 VVEETKPA 502
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
271-430 |
6.05e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.94 E-value: 6.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSE-ATPAVPLATPSEARPATPsqARPDIPSKP-APETPEEGAGIPQETEPQEPAdtgeSQIQTSIETLPTAAEEA 348
Cdd:PHA03247 2732 SPALPAApAPPAVPAGPATPGGPARP--ARPPTTAGPpAPAPPAAPAAGPPRRLTRPAV----ASLSESRESLPSPWDPA 2805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 349 -------PANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASA-------EAEPTEAADTEAAPT------ 408
Cdd:PHA03247 2806 dppaavlAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApggdvrrRPPSRSPAAKPAAPArppvrr 2885
|
170 180
....*....|....*....|..
gi 951077764 409 MSSEPVQEdSTEAEVTDQDQSE 430
Cdd:PHA03247 2886 LARPAVSR-STESFALPPDQPE 2906
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
269-448 |
6.92e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.56 E-value: 6.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 269 DIAPATPSEATPAVPlATPSeaRPATPSQARPDIP--SKPAPETPEEGAGIPQETEPQEPADTGESQIQTSietlPTAAE 346
Cdd:PHA03247 2861 DVRRRPPSRSPAAKP-AAPA--RPPVRRLARPAVSrsTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ----PQPPP 2933
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 347 EAPANPE-----ETETQVSAESSPADT---------GENQTQAATETEPADSEETTiqASAEAEPTEAADTEAAPTMSSE 412
Cdd:PHA03247 2934 PPPPRPQpplapTTDPAGAGEPSGAVPqpwlgalvpGRVAVPRFRVPQPAPSREAP--ASSTPPLTGHSLSRVSSWASSL 3011
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 951077764 413 PVQEDSTEAEVT------DQDQSEEMESESVVVIESKAEDSS 448
Cdd:PHA03247 3012 ALHEETDPPPVSlkqtlwPPDDTEDSDADSLFDSDSERSDLE 3053
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
318-472 |
8.31e-07 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 54.28 E-value: 8.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 318 PQETEPQEPADTGESQIQTSIETLPTAAEEAPANPEET---------ETQVSAESSPADTGE-NQTQAATETEPADSEET 387
Cdd:PRK10811 850 PQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVveavaevveEPVVVAEPQPEEVVVvETTHPEVIAAPVTEQPQ 929
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 388 TIqaSAEAEPTEAADTEAAptmssEPVQEDSTEAE-VTDQDQSEEMESESVVVIESKAEDSSNEHKGTTAEDTRETQKDA 466
Cdd:PRK10811 930 VI--TESDVAVAQEVAEHA-----EPVVEPQDETAdIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
|
....*.
gi 951077764 467 DEEESE 472
Cdd:PRK10811 1003 PAQVPE 1008
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
271-408 |
8.97e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.84 E-value: 8.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPetpeegAGIPQETEPQEPAdtgesqiqtsietlPTAAEEAPA 350
Cdd:PRK07764 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQP------APAPAPAPAPPSP--------------AGNAPAGGA 453
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 951077764 351 NPEETETQVSAESSPADTGENQTQAATETEPADSEEttiqASAEAEPTEAADTEAAPT 408
Cdd:PRK07764 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA----PAAAPAAPAAPAAPAGAD 507
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
271-478 |
9.04e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.84 E-value: 9.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPDiPSKPAPETPEEGAGIPQETEPQEPA------DTGESQIQTSIETLPTA 344
Cdd:PRK07764 614 RPAAPAAPAAPAAPAPAGAAAAPAEASAAPA-PGVAAPEHHPKHVAVPDASDGGDGWpakaggAAPAAPPPAPAPAAPAA 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 345 AEEAPANPEETE--TQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADT---EAAPTMSSEPVQEDST 419
Cdd:PRK07764 693 PAGAAPAQPAPApaATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGapaQPPPPPAPAPAAAPAA 772
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 951077764 420 EAEVTDQDQSEEMEsesvvvieskaedssnehkgttAEDTRETQkDADEEESEDYTVDL 478
Cdd:PRK07764 773 APPPSPPSEEEEMA----------------------EDDAPSMD-DEDRRDAEEVAMEL 808
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
283-433 |
9.17e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 53.44 E-value: 9.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 283 PLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGEsqiqtsietlPTAAEEAPANPEETETQVSAE 362
Cdd:PHA03169 103 PTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAP----------PESHNPSPNQQPSSFLQPSHE 172
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 951077764 363 SSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVTDQDQSEEME 433
Cdd:PHA03169 173 DSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
271-392 |
1.02e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.84 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPdiPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTsietlPTAAEEAPA 350
Cdd:PRK07764 402 AAAAPAAAPAPAAAAPAAAAAPAPAAAPQP--APAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ-----PAPAPAAAP 474
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 951077764 351 NPEETEtQVSAESSPADTGENQTQAATETEPADSEETTIQAS 392
Cdd:PRK07764 475 EPTAAP-APAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
275-408 |
1.26e-06 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 52.46 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 275 PSEATPAVPLAT-PSEARPATPSQARPDIPSKPAPETPEEGAgipQETEPQEPADTGESQIQTSIETLPTAAEEAPANPE 353
Cdd:NF040712 190 PDFGRPLRPLATvPRLAREPADARPEEVEPAPAAEGAPATDS---DPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAP 266
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 951077764 354 ETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPT 408
Cdd:NF040712 267 AAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPA 321
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
267-424 |
1.50e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 53.12 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 267 ETDIAPATPSEATPAVPlATPSEARPATPSQARPDIPSKPAP-ETPEEGAGIPQETEPQEPADTG-ESQIQTSIETLPTA 344
Cdd:PRK10811 860 EAEEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVvAEPQPEEVVVVETTHPEVIAAPvTEQPQVITESDVAV 938
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 345 AEEAPANPEETetqvsAESSPADTGENQTQAATETEPAdseETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVT 424
Cdd:PRK10811 939 AQEVAEHAEPV-----VEPQDETADIEEAAETAEVVVA---EPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
266-432 |
1.65e-06 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 52.87 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 266 DETDIAPATPSEA-TPAVPLATPSEARPATPSQARPDIPSkPAPETPEEGAGI-------PQETEPQEPAD--TGESQIQ 335
Cdd:COG3170 313 ALKNPAPAAAVSApAAAAAAATVEAAAPAAAAQPAAAAPA-PALDNPLLLAGLlrrrkaeADEVDPVAEADvyLAYGRDD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 336 TSIETLPTAAEEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPT------- 408
Cdd:COG3170 392 QAEEILKEALASEPERLDLRLKLLEIYAARGDRAAFEALAAELYALTGGGRALDPDNPLYAPGAAAAAEDAPAaeaedds 471
|
170 180
....*....|....*....|....
gi 951077764 409 MSSEPVQEDSTEAEVTDQDQSEEM 432
Cdd:COG3170 472 PAEEPAASAAAAAELGDEEGAREL 495
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
274-435 |
2.73e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 52.40 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 274 TPSEATPAVPLAtpsearpATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPANPE 353
Cdd:PRK08691 379 SPSAQTAEKETA-------AKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQ 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 354 ETETQVSAESSPADTGENQ---TQAATETEPADSEETTIQASAEAEP-TEAADTEaapTMSSEPVQEDSTEAEVTDQDQS 429
Cdd:PRK08691 452 TSAKSIQTASEAETPPENQvskNKAADNETDAPLSEVPSENPIQATPnDEAVETE---TFAHEAPAEPFYGYGFPDNDCP 528
|
....*.
gi 951077764 430 EEMESE 435
Cdd:PRK08691 529 PEDGAE 534
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
258-397 |
3.85e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 51.73 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 258 AILEDSFKDETDIAPATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPeegagiPQETEPQEPADTGESQIQTS 337
Cdd:PRK14950 354 AVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA------TPPPVPPRPVAPPVPHTPES 427
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 951077764 338 IETLPTAA---EEAP--ANPEETETQVSAESSPADTGEnQTQAATE--TEPADSEETTIQA--SAEAEP 397
Cdd:PRK14950 428 APKLTRAAipvDEKPkyTPPAPPKEEEKALIADGDVLE-QLEAIWKqiLRDVPPRSPAVQAllSSGVRP 495
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
280-432 |
4.13e-06 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 51.33 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 280 PAVPLATPS--EARPATPSQARPDIPSKPAPETpeEGAGIPQETEPQEPAdtgesqiQTSIETLPTAAEEAPANPEETET 357
Cdd:COG3170 199 AGAVLRVPAaeEVAALSPAEARQEVQAQSADWA--AYRARLAAAVEPAPA-------AAAPAAPPAAAAAAGPVPAAAED 269
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 951077764 358 QVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAP-TMSSEPVQEDSTEAEVTDQDQSEEM 432
Cdd:COG3170 270 TLSPEVTAAAAAEEADALPEAAAELAERLAALEAQLAELQRLLALKNPAPaAAVSAPAAAAAAATVEAAAPAAAAQ 345
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
271-473 |
5.81e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 50.74 E-value: 5.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARpATPSQARPDIPSKPApETPEEGAGIP-----QETEPQEPADTGESQIQTSIETLPTAA 345
Cdd:PHA03169 47 APPAPTTSGPQVRAVAEQGHR-QTESDTETAEESRHG-EKEERGQGGPsgsgsESVGSPTPSPSGSAEELASGLSPENTS 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 346 EEAPANPEETEtqvSAESSPADTGENQTQAATETEPA--DSEETTIQASAE--AEPTEAADTEAAPTMSSEPVQEDSTEA 421
Cdd:PHA03169 125 GSSPESPASHS---PPPSPPSHPGPHEPAPPESHNPSpnQQPSSFLQPSHEdsPEEPEPPTSEPEPDSPGPPQSETPTSS 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 951077764 422 EvtdqDQSEEMESESvvviESKAEDSSNEHKGTTAEDTRETQKDADEEESED 473
Cdd:PHA03169 202 P----PPQSPPDEPG----EPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGP 245
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
309-473 |
8.33e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 50.76 E-value: 8.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 309 ETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPANPEETETQVSAESSPADtGENQTQAATETEPADSEETT 388
Cdd:TIGR00927 720 ETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE-DEGEIQAGEDGEMKGDEGAE 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 389 IQASAEAEPTEAADTE----AAPTMSSEPVQEDSTEAEVTDQDQSEEMESEsvvviesKAEDSSNEHKGTTAEDTRETQK 464
Cdd:TIGR00927 799 GKVEHEGETEAGEKDEhegqSETQADDTEVKDETGEQELNAENQGEAKQDE-------KGVDGGGGSDGGDSEEEEEEEE 871
|
....*....
gi 951077764 465 DADEEESED 473
Cdd:TIGR00927 872 EEEEEEEEE 880
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
291-471 |
8.91e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 50.76 E-value: 8.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 291 RPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPANPEETETQVSAESSPADTGE 370
Cdd:TIGR00927 619 RPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 371 NQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVTDQDQSEEMESESVVVIESKAEDSSNE 450
Cdd:TIGR00927 699 IEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE 778
|
170 180
....*....|....*....|..
gi 951077764 451 HKGTT-AEDTRETQKDADEEES 471
Cdd:TIGR00927 779 DEGEIqAGEDGEMKGDEGAEGK 800
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
272-413 |
8.98e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.09 E-value: 8.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 272 PATPSEATPAVPLATPSEARPATPSQARPDIPskPAPETPEEGAGIPQETEPQE------PADTGESQIQTSiETLPTAA 345
Cdd:PHA03247 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP--LAPTTDPAGAGEPSGAVPQPwlgalvPGRVAVPRFRVP-QPAPSRE 2987
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 951077764 346 EEAPANPEETETQVSAESSPADTGENQTQAA--------TETEPADSEETTIQASAEAEPtEAADTEAAPTMSSEP 413
Cdd:PHA03247 2988 APASSTPPLTGHSLSRVSSWASSLALHEETDpppvslkqTLWPPDDTEDSDADSLFDSDS-ERSDLEALDPLPPEP 3062
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
271-402 |
9.13e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 50.64 E-value: 9.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APAtPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPA 350
Cdd:PRK12323 457 APA-AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPD 535
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 951077764 351 NPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAAD 402
Cdd:PRK12323 536 DAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAAR 587
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
266-473 |
1.01e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 50.76 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 266 DETDIAPATPSEATPAVPLATPSEARPATPSQARP------DIPSKPAPETpeEGAGIPQETEPQEPADTGESQIQTSIE 339
Cdd:TIGR00927 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGenesegEIPAERKGEQ--EGEGEIEAKEADHKGETEAEEVEHEGE 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 340 TLPtaaeEAPANPEETETQVSAESSpADTGENQTQAATETEP-ADSEETTIQASAEAEPTEAADT-------------EA 405
Cdd:TIGR00927 721 TEA----EGTEDEGEIETGEEGEEV-EDEGEGEAEGKHEVETeGDRKETEHEGETEAEGKEDEDEgeiqagedgemkgDE 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 406 APTMSSEPVQEDSTEAEVTDQDQSEEMESESVVVIESKAEDSSNEHKGTTAEDTR-------------ETQKDADEEESE 472
Cdd:TIGR00927 796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKgvdggggsdggdsEEEEEEEEEEEE 875
|
.
gi 951077764 473 D 473
Cdd:TIGR00927 876 E 876
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
266-437 |
1.05e-05 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 50.18 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 266 DETDIAPATPSEATPAV---------PLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIqt 336
Cdd:COG3170 207 AAEEVAALSPAEARQEVqaqsadwaaYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLSPEVTAAAAAEEA-- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 337 siETLPTAAEEAPANPEETETQVS--------AESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTE---- 404
Cdd:COG3170 285 --DALPEAAAELAERLAALEAQLAelqrllalKNPAPAAAVSAPAAAAAAATVEAAAPAAAAQPAAAAPAPALDNPllla 362
|
170 180 190
....*....|....*....|....*....|....*....
gi 951077764 405 ------AAPTMSSEPVQEDSTEAEVTDQDQSEEMESESV 437
Cdd:COG3170 363 gllrrrKAEADEVDPVAEADVYLAYGRDDQAEEILKEAL 401
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
275-426 |
1.21e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 50.30 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 275 PSEATPAVPLATPSEARPA-TPSQARPDIPSkPAPETPEEGAGIPQETEPQEPADTgesqiQTSIETLPTAAEEAPaNPE 353
Cdd:pfam05109 461 PASTGPTVSTADVTSPTPAgTTSGASPVTPS-PSPRDNGTESKAPDMTSPTSAVTT-----PTPNATSPTPAVTTP-TPN 533
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 951077764 354 ETETQVsAESSPADTGENQTQAATETEPADSEET---TIQASAEAEPTEAAdTEAAPTMSSEPVQEDSTEAEVTDQ 426
Cdd:pfam05109 534 ATSPTL-GKTSPTSAVTTPTPNATSPTPAVTTPTpnaTIPTLGKTSPTSAV-TTPTPNATSPTVGETSPQANTTNH 607
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
325-473 |
1.22e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 50.38 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 325 EPADTGESqiqTSIETLPTAAEEAPaNPEETETQVSAESSPADTGENQTQAATETEPADSE--ETTIQAS-----AEAEP 397
Cdd:TIGR00927 637 EAEHTGER---TGEEGERPTEAEGE-NGEESGGEAEQEGETETKGENESEGEIPAERKGEQegEGEIEAKeadhkGETEA 712
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 951077764 398 TEAADTEAAPTMSSEPVQEDSTEAEVTDQDQSEEMESESVVVIESKAEDSSNEHKGTTAEDTRETQKDADEEESED 473
Cdd:TIGR00927 713 EEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGED 788
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
273-419 |
1.26e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 49.58 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 273 ATPSEATPAVPLATpSEARPATPSQARPDiPSKPAPETPEEGAgiPQETEPQEPADTGESQIQTSIETLPTAAEEAPANP 352
Cdd:PHA03169 110 SAEELASGLSPENT-SGSSPESPASHSPP-PSPPSHPGPHEPA--PPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP 185
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 951077764 353 EEtetqvsaESSPADTGENQTQAATETEPADSE----ETTIQASAEAEPTEAADTEAAPTMSSEPVQEDST 419
Cdd:PHA03169 186 EP-------DSPGPPQSETPTSSPPPQSPPDEPgepqSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
270-415 |
1.26e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 50.42 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 270 IAPATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPE--------EGAGIPQETEPQEPADTGESQIQTSIETL 341
Cdd:PRK10811 887 VVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQvitesdvaVAQEVAEHAEPVVEPQDETADIEEAAETA 966
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 951077764 342 PTAAEEAPAnpeETETQVSAESSPADTGENQTQAATETEPADSEETTIQAS-AEAEPTEAadteAAPTMSSEPVQ 415
Cdd:PRK10811 967 EVVVAEPEV---VAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNhATAPMTRA----PAPEYVPEAPR 1034
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
260-447 |
1.29e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 50.05 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 260 LEDSFKDETDIAPAtpSEATPAVPLATPSEARPATPSQARPDIPSKPAPEtPEEGAGIPQETEPQEPAD----------- 328
Cdd:PRK14960 382 LNSQAQTAQEITPV--SAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEPQPNQDlmvfdpnhhel 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 329 TGESQIQTSiETLPTAAEEAPANPEETETQVSAEsspadtgenqTQAAT-ETEPADSEETTIQASAEAEPTEAADTEAAP 407
Cdd:PRK14960 459 IGLESAVVQ-ETVSVLEEDFIPVPEQKLVQVQAE----------TQVKQiEPEPASTAEPIGLFEASSAEFSLAQDTSAY 527
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 951077764 408 TMSSEPVQEDSTEAevtdqdQSEEMESESVVVIESKAEDS 447
Cdd:PRK14960 528 DLVSEPVIEQQSLV------QAEIVETVAVVKEPNATDNS 561
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
257-399 |
1.37e-05 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 49.59 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 257 DAILEDSfKDETDIAPATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGEsqiqt 336
Cdd:PRK13108 327 DDVAEAV-KAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEE----- 400
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 951077764 337 sietlptAAEEAPANPEETETQVSAESSP-ADTGENQTQAATETEPADSEETTIQASAEAEPTE 399
Cdd:PRK13108 401 -------PAALASEAHDETEPEVPEKAAPiPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRR 457
|
|
| PRK12495 |
PRK12495 |
hypothetical protein; Provisional |
264-403 |
2.05e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 47.56 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 264 FKDETDIAPATPSEATPAvplATPSEA--RPATPSQARPDIPSKPAPETPEEGAgipqETEPQEPADTGESQIQTSIETL 341
Cdd:PRK12495 94 ASPDDDAQPAAEAEAADQ---SAPPEAssTSATDEAATDPPATAAARDGPTPDP----TAQPATPDERRSPRQRPPVSGE 166
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 951077764 342 PTAAEEAPANPEETETqvSAESSPADTGENQTQAATETEPADSEETTIQASAEAepTEAADT 403
Cdd:PRK12495 167 PPTPSTPDAHVAGTLQ--AARESLVETLARFARRAAATDDPRRAREYLEAAREA--AEALDA 224
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
278-423 |
2.12e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 278 ATPAVPLATPSEARPATPSQArpdiPSKPAPETPEEGAgiPQETEPQEPAdtgesqiqtsietlPTAAEEAPANPEETET 357
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPA----PAAAAPAAAAAPA--PAAAPQPAPA--------------PAPAPAPPSPAGNAPA 450
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 951077764 358 QVSAESSPADTGENQTQAAtetePADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEV 423
Cdd:PRK07764 451 GGAPSPPPAAAPSAQPAPA----PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
271-415 |
3.10e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.72 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPE--------TPEEGAGI--PQETEPQEPADTGESQIQtSIET 340
Cdd:PRK12323 393 AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEalaaarqaSARGPGGApaPAPAPAAAPAAAARPAAA-GPRP 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 341 LPTAAEEAPANPEEtetqvSAESSPADTG----ENQTQAATETEPADSEETTIQASAEA--EPTEAADTEAAPTMSSEPV 414
Cdd:PRK12323 472 VAAAAAAAPARAAP-----AAAPAPADDDpppwEELPPEFASPAPAQPDAAPAGWVAESipDPATADPDDAFETLAPAPA 546
|
.
gi 951077764 415 Q 415
Cdd:PRK12323 547 A 547
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
251-436 |
4.82e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.24 E-value: 4.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 251 ASMFDFDAILEDSFKDETDiAPATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTG 330
Cdd:PHA03307 52 AVTVVAGAAACDRFEPPTG-PPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSP 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 331 ESQIQtsiETLPTAAEEAPANPEETETQVSAESSPADTGENQTQAA------TETEPADS----EETTIQASAEAEPTEA 400
Cdd:PHA03307 131 APDLS---EMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAlplsspEETARAPSsppaEPPPSTPPAAASPRPP 207
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 951077764 401 A--DTEAAPTMSSEPV----QEDSTEAEVTDQDQSEEMESES 436
Cdd:PHA03307 208 RrsSPISASASSPAPApgrsAADDAGASSSDSSSSESSGCGW 249
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
280-415 |
4.94e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.40 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 280 PAVPLatPSEARPATPSQARPdiPSKPAPETPEEGAGI--------PQETEPQEPADTGESQIQTSIETLPTAAEEAPAN 351
Cdd:PHA03247 2551 PPPPL--PPAAPPAAPDRSVP--PPRPAPRPSEPAVTSrarrpdapPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDP 2626
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 951077764 352 PEEtetqvSAESSPADTGENQTQAATETEPADSEEttiqASAEAEPTEAADTEAAPTMSSEPVQ 415
Cdd:PHA03247 2627 PPP-----SPSPAANEPDPHPPPTVPPPERPRDDP----APGRVSRPRRARRLGRAAQASSPPQ 2681
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
280-473 |
4.98e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 47.94 E-value: 4.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 280 PAVPLATPSEARPATPSQarpdiPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPANpeetetQV 359
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPA-----ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQ------QL 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 360 SAESSPADTGENQTQAATETEPADSEETTIqasaeAEPTEAADTEAAPTMSSEPVQEDSTEAEvtdqdqseemESESVVV 439
Cdd:PRK07994 430 QRAQGATKAKKSEPAAASRARPVNSALERL-----ASVRPAPSALEKAPAKKEAYRWKATNPV----------EVKKEPV 494
|
170 180 190
....*....|....*....|....*....|....*
gi 951077764 440 IESKAEDSSNEHkgttaEDTRE-TQKDADEEESED 473
Cdd:PRK07994 495 ATPKALKKALEH-----EKTPElAAKLAAEAIERD 524
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
287-464 |
5.12e-05 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 47.67 E-value: 5.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 287 PSEARPATPSQARPDIPSKPAPetPEEGAgipqetEPQEPADTGESQIQTSIETLPTAAEEAPANPEETETQVSAESSPA 366
Cdd:PRK13108 295 ALEREPAELAAAAVASAASAVG--PVGPG------EPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEET 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 367 DTGENQTQAATETEPADSEETTIQASAEA-EPTEAADTEAAPTMSSEPvQEDSTEAEVTDQDQSEEMESESvvvieskAE 445
Cdd:PRK13108 367 SEADIEREQPGDLAGQAPAAHQVDAEAASaAPEEPAALASEAHDETEP-EVPEKAAPIPDPAKPDELAVAG-------PG 438
|
170
....*....|....*....
gi 951077764 446 DSSNEHKGTTAEDTRETQK 464
Cdd:PRK13108 439 DDPAEPDGIRRQDDFSSRR 457
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
271-428 |
6.43e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 47.55 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPL--ATPSEARPATPSQARPdIPSKPAPETPEEGAGIPQETEPQEPADTgeSQIQTSIETLPTA-AEE 347
Cdd:PRK07994 367 EPEVPPQSAAPAASaqATAAPTAAVAPPQAPA-VPPPPASAPQQAPAVPLPETTSQLLAAR--QQLQRAQGATKAKkSEP 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 348 APANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPtEAADTEAAPTMSSEPVQEDSTE--AEVTD 425
Cdd:PRK07994 444 AAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEP-VATPKALKKALEHEKTPELAAKlaAEAIE 522
|
...
gi 951077764 426 QDQ 428
Cdd:PRK07994 523 RDP 525
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
271-385 |
1.17e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 47.02 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPA 350
Cdd:PRK14951 394 VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVA 473
|
90 100 110
....*....|....*....|....*....|....*
gi 951077764 351 NPEETETQVSAESSPADTGENQTQAATETEPADSE 385
Cdd:PRK14951 474 SAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAE 508
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
271-418 |
1.24e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.24 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPL-ATPSEARPATPS--QARPDIPSKPAPET-PEEGAGIP-----QETEPQEPADTGESQIQTSIETL 341
Cdd:PHA03247 2807 PPAAVLAPAAALPPaASPAGPLPPPTSaqPTAPPPPPGPPPPSlPLGGSVAPggdvrRRPPSRSPAAKPAAPARPPVRRL 2886
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 951077764 342 PtaaeeAPANPEETETQvsaeSSPADTGENQTQAATETEPADSEETTIQAS-AEAEPTEA-ADTEAAPTMSSEPVQEDS 418
Cdd:PHA03247 2887 A-----RPAVSRSTESF----ALPPDQPERPPQPQAPPPPQPQPQPPPPPQpQPPPPPPPrPQPPLAPTTDPAGAGEPS 2956
|
|
| ftsN |
TIGR02223 |
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a ... |
318-472 |
1.26e-04 |
|
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division]
Pssm-ID: 274041 [Multi-domain] Cd Length: 298 Bit Score: 45.84 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 318 PQETEPQEPADTGESQIQTSIETLPTAAEEAPANPEE---TETQVSAESSPADTGENQTQA------ATETEPADSEETT 388
Cdd:TIGR02223 52 KQANEPETLQPKNQTENGETAADLPPKPEERWSYIEEleaREVLINDPEEPSNGGGVEESAqltaeqRQLLEQMQADMRA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 389 IQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEV------TDQDQSEEMESESVVVIESK--AEDSSNEHKGTTAEDTR 460
Cdd:TIGR02223 132 AEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAqktpveTEKIASKVKEAKQKQKALPKqtAETQSNSKPIETAPKAD 211
|
170
....*....|....
gi 951077764 461 --ETQKDADEEESE 472
Cdd:TIGR02223 212 kaDKTKPKPKEKAE 225
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
277-436 |
1.79e-04 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 46.22 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 277 EATPAvplATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEP--ADTGESQIQTSIETLPTAAEEapanPEE 354
Cdd:pfam03546 244 EAPAA---ATPAQAKPALKTPQTKASPRKGTPITPTSAKVPPVRVGTPAPwkAGTVTSPACASSPAVARGAQR----PEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 355 tetqVSAESSPADTGENQTQAATETePADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVTDQDQSEEMES 434
Cdd:pfam03546 317 ----DSSSSEESESEEETAPAAAVG-QAKSVGKGLQGKAASAPTKGPSGQGTAPVPPGKTGPAVAQVKAEAQEDSESSEE 391
|
..
gi 951077764 435 ES 436
Cdd:pfam03546 392 ES 393
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
289-472 |
2.14e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 45.73 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 289 EARPATPSQARPDIPS-KPAPETPeegagipQETEPQEPADTGESQIQTSIETlpTAAEEAPANPEETETQ--------- 358
Cdd:PHA03169 28 GTREQAGRRRGTAARAaKPAPPAP-------TTSGPQVRAVAEQGHRQTESDT--ETAEESRHGEKEERGQggpsgsgse 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 359 --VSAESSPADTGENQTQAATETEPADS--EETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEvtDQDQSEEMES 434
Cdd:PHA03169 99 svGSPTPSPSGSAEELASGLSPENTSGSspESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSF--LQPSHEDSPE 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 951077764 435 ESVVVIESKAEDSSNEHKGTTAEDTRETQKDADEEESE 472
Cdd:PHA03169 177 EPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEP 214
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
271-418 |
2.53e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.86 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPA---VPLATPSEARPATPSQARPdIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEE 347
Cdd:PRK14951 380 TPARPEAAAPAaapVAQAAAAPAPAAAPAAAAS-APAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPE 458
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 951077764 348 APANPEETETQVSAESSPADTGENQTQAA-TETEPADSEETTIQASAEAEPTEAADTEAAptMSSEPVQEDS 418
Cdd:PRK14951 459 TVAIPVRVAPEPAVASAAPAPAAAPAAARlTPTEEGDVWHATVQQLAAAEAITALARELA--LQSELVARDG 528
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
262-409 |
3.07e-04 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 45.45 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 262 DSFKDETDIAPATPSEATPAVplaTPSEARP-ATPSQARPdiPSKPAPETPEEGAGIP-----QETEPQEPADTGESQIQ 335
Cdd:pfam03546 96 ESSSEESDSDGETPAAATLTT---SPAQVKPlGKNSQVRP--ASTVGKGPSGKGANPAppgkaGSAAPLVQVGKKEEDSE 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 336 TSIETLPTAAEEAP----ANPEETETQVSAESSPAD---------TGENQTQAATETEPADSEETTIQASAEAE-PTEAA 401
Cdd:pfam03546 171 SSSEESDSEGEAPPaatqAKPSGKILQVRPASGPAKgaapappqkAGPVATQVKAERSKEDSESSEESSDSEEEaPAAAT 250
|
....*...
gi 951077764 402 DTEAAPTM 409
Cdd:pfam03546 251 PAQAKPAL 258
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
272-416 |
3.20e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.85 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 272 PATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIETL-PTAAEEAPA 350
Cdd:PRK10263 400 PVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQqPAAQEPLYQ 479
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 951077764 351 NPEETETQVSAESSPadtgenqtqAATETEPADS-----EETTIQASAEAEPTeAADTEAAPtmssEPVQE 416
Cdd:PRK10263 480 QPQPVEQQPVVEPEP---------VVEETKPARPplyyfEEVEEKRAREREQL-AAWYQPIP----EPVKE 536
|
|
| rad2 |
TIGR00600 |
DNA excision repair protein (rad2); All proteins in this family for which functions are known ... |
241-458 |
5.12e-04 |
|
DNA excision repair protein (rad2); All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273166 [Multi-domain] Cd Length: 1034 Bit Score: 44.89 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 241 TGEMVTMGIHASMFDFDAILEDSFKDETdiapaTPSEATPAVPLATPSEARPATPSqarPDIPSKPAPETPEEgAGIPQE 320
Cdd:TIGR00600 536 KLAIPTEGTQNLQGISDHPEQFEFQNEL-----SPLETKNNESNLSSDAETEGSPN---PEMPSWSSVTVPSE-ALDNYE 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 321 TEPQEPADTGESQIQTSIETLPT---AAEEAPANPEETET-QVSAESSPADTGENQTQAATETepadSEETTIQASAEAE 396
Cdd:TIGR00600 607 TTNPSNAKEVRNFAETGIQTTNVgesADLLLISNPMEVEPmESEKEESESDGSFIEVDSVSST----LELQVPSKSQPTD 682
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 951077764 397 PTEAADTEAAPTMSSEPVQEDsteaEVTDQDQSEEMESESVVVIESKAEDSSNEHKGTTAED 458
Cdd:TIGR00600 683 ESEENAENKVASIEGEHRKEI----EDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEE 740
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
266-370 |
6.03e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.07 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 266 DETD-IAPATPseATPAVPLATPSEARPATPSQARPDIPSKPAPETPEegagIPQETEPQEPAdtgESQIQTSIETLPTA 344
Cdd:PRK11633 51 DEPDmMPAATQ--ALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTP----VEPEPAPVEPP---KPKPVEKPKPKPKP 121
|
90 100
....*....|....*....|....*..
gi 951077764 345 AEEAPANPEET-ETQVSAESSPADTGE 370
Cdd:PRK11633 122 QQKVEAPPAPKpEPKPVVEEKAAPTGK 148
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
261-431 |
8.56e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 43.81 E-value: 8.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 261 EDSFKDETDIAPATP-SEATPAVPLATPSEARPATPSQARPD-----------------IPSKPAPETPEEGAGIPQETE 322
Cdd:PHA03169 117 GLSPENTSGSSPESPaSHSPPPSPPSHPGPHEPAPPESHNPSpnqqpssflqpshedspEEPEPPTSEPEPDSPGPPQSE 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 323 pqEPADTGEsqiqtsietlPTAAEEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETT----IQASAEAEPT 398
Cdd:PHA03169 197 --TPTSSPP----------PQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHrshsYTVVGWKPST 264
|
170 180 190
....*....|....*....|....*....|...
gi 951077764 399 EAAdteAAPTMSSEPVQEDSTEAEVTDQDQSEE 431
Cdd:PHA03169 265 RPG---GVPKLCLRCTSHPSHRSRLPEGQQSED 294
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
270-388 |
1.01e-03 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 43.39 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 270 IAPATPSEATPAVPlATPSEARPATPSQAR------PDIPSKPAPETPEEGAGIPQETEPqepadtgesqiqtsieTLPT 343
Cdd:PRK10905 130 VAPVRNGNASRQTA-KTQTAERPATTRPARkqaviePKKPQATAKTEPKPVAQTPKRTEP----------------AAPV 192
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 951077764 344 AAEEAPANPEETETQVSAESSPADTGenqTQAATETEPADSEETT 388
Cdd:PRK10905 193 ASTKAPAATSTPAPKETATTAPVQTA---SPAQTTATPAAGGKTA 234
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
261-473 |
1.39e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.46 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 261 EDSFKDETDIAPATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIQTSIET 340
Cdd:COG5271 586 ETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADES 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 341 LPTAAEEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTE 420
Cdd:COG5271 666 EEEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEADAEEADTEADGTAEEAEEAAEEAESADEEAASL 745
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 951077764 421 AEVTDQdqseemESESVVVIESKAEDSSNEHKGTTAEDTRETQKDADEEESED 473
Cdd:COG5271 746 PDEADA------EEEAEEAEEAEEDDADGLEEALEEEKADAEEAATDEEAEAA 792
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
361-475 |
1.46e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 43.45 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 361 AESSPADTGEnQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVtdqdQSEEMESESVVVI 440
Cdd:TIGR00927 638 AEHTGERTGE-EGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEI----EAKEADHKGETEA 712
|
90 100 110
....*....|....*....|....*....|....*
gi 951077764 441 ESKAEDSSNEHKGTTAEDTRETQKDADEEESEDYT 475
Cdd:TIGR00927 713 EEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEG 747
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
291-477 |
1.59e-03 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 43.36 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 291 RPATPSQarPDIPSK--PAPETPEEGAGIPQETEPQEPADTGESQIQTSIETLPTAAEEAPANPEETETQVSAESSPADT 368
Cdd:NF033609 541 KPVVPEQ--PDEPGEiePIPEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDS 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 369 GENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVTDQDQSEEMESESVVVIESKAEDSS 448
Cdd:NF033609 619 ASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 698
|
170 180
....*....|....*....|....*....
gi 951077764 449 NEHKGTTAEDTRETQKDADEEESEDYTVD 477
Cdd:NF033609 699 DSDSDSDSDSDSDSDSDSDSDSDSDSDSD 727
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
271-376 |
2.31e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.06 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 271 APATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQE-PADTGESQIQTSIETLPTAAEEAP 349
Cdd:NF040712 218 EPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEaTRDAGEPPAPGAAETPEAAEPPAP 297
|
90 100
....*....|....*....|....*..
gi 951077764 350 ANPEETETQVSAESSPADTGENQTQAA 376
Cdd:NF040712 298 APAAPAAPAAPEAEEPARPEPPPAPKP 324
|
|
| PRK14891 |
PRK14891 |
50S ribosomal protein L24e/unknown domain fusion protein; Provisional |
349-434 |
2.33e-03 |
|
50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Pssm-ID: 184885 [Multi-domain] Cd Length: 131 Bit Score: 39.93 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 349 PANPEETETQvSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVTDQDQ 428
Cdd:PRK14891 47 ARDLEWTEAG-RAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEE 125
|
....*.
gi 951077764 429 SEEMES 434
Cdd:PRK14891 126 DEEAEA 131
|
|
| DMP1 |
pfam07263 |
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix ... |
328-473 |
2.85e-03 |
|
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralized dentin. DMP1 is primarily localized in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralized matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown.
Pssm-ID: 462128 [Multi-domain] Cd Length: 519 Bit Score: 42.22 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 328 DTGESQIQTSIETLPTAAEEAPANPEETETQVSAES---SPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTE 404
Cdd:pfam07263 277 DRGELDDSNTMEEVKSDSTESTSSKEAGLSQSREDSkseSQEDSEESQSQEDSQNSQDPSSESSQEADLPSQESSSESQE 356
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 951077764 405 AA----------PTMSSEPVQEDSTEAEVTDQDQSEEMESESVvviESKAEDSSNEhKGTTAEDTRETQKDADEEESED 473
Cdd:pfam07263 357 EVvsesrgdnpdNTSSSEEDQEDSDSSEEDSLSTFSSSESESR---EEQADSESNE-SLRSSEESPESSEDENSSSQEG 431
|
|
| PRK14891 |
PRK14891 |
50S ribosomal protein L24e/unknown domain fusion protein; Provisional |
396-473 |
3.84e-03 |
|
50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Pssm-ID: 184885 [Multi-domain] Cd Length: 131 Bit Score: 39.16 E-value: 3.84e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 951077764 396 EPTEAADTEAAPTMSSEPVQEDSTEAEVTDQDQSEEMESESVVVIESKAEDSSNEHKGTTAEDTRETQKDADEEESED 473
Cdd:PRK14891 51 EWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEE 128
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
261-472 |
4.12e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 41.92 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 261 EDSFKDETDIAPATPSEATPAVPLATPSEARPATPSQARPDipskpAPETPEEGAGIPQETEP-QEPADTGESQIQTSIE 339
Cdd:COG5271 467 EDTESAEEDADGDEATDEDDASDDGDEEEAEEDAEAEADSD-----ELTAEETSADDGADTDAaADPEDSDEDALEDETE 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 340 TLPTAAEEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDST 419
Cdd:COG5271 542 GEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADADG 621
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 951077764 420 EAEVTDQDQSEEMESESVVVIESKAEDSSNEHKGTTAEDTRETQKDADEEESE 472
Cdd:COG5271 622 AADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAEDESE 674
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
265-481 |
5.88e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 41.13 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 265 KDETDIAPATPSEATPAVPLATPSEARPATPSQARPDIPSKPAPETPEEGAGIPQETEPQEPADTGESQIqTSIETLPTA 344
Cdd:PRK05901 5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDI-PKKKTKTAA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 951077764 345 AEEAPANPEETETQVSAESSPADTGENQTQAATETEPADSEETTIQASAEAEPTEAADTEAAPTMSSEPVQEDSTEAEVT 424
Cdd:PRK05901 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 951077764 425 DQDQSEEMESESVVvIESKAEDSSNEHKGTTAEDTRETQKDADEEESED----YTVDLGKV 481
Cdd:PRK05901 164 DVDDEDEEKKEAKE-LEKLSDDDDFVWDEDDSEALRQARKDAKLTATADpvkaYLKQIGKV 223
|
|
| |
