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Conserved domains on  [gi|981342880|ref|WP_059558593|]
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DUF3562 domain-containing protein [Burkholderia stagnalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3562 super family cl13512
Protein of unknown function (DUF3562); This family of proteins is functionally uncharacterized. ...
 4-57 1.36e-05

Protein of unknown function (DUF3562); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.


The actual alignment was detected with superfamily member pfam12085:

Pssm-ID: 432319  Cd Length: 60  Bit Score: 38.24  E-value: 1.36e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 981342880   4 ERWFEPLREVARELAIPEDALKRWLDEEIKDLEEGAHVREFVMVFAIRRVRARL 57
Cdd:pfam12085  2 DTVDEIVLAIAEETDAPEEEVSRMYDDAVARYSDGARILDYVPVLAARRVRETL 55
 
Name Accession Description Interval E-value
DUF3562 pfam12085
Protein of unknown function (DUF3562); This family of proteins is functionally uncharacterized. ...
 4-57 1.36e-05

Protein of unknown function (DUF3562); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.


Pssm-ID: 432319  Cd Length: 60  Bit Score: 38.24  E-value: 1.36e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 981342880   4 ERWFEPLREVARELAIPEDALKRWLDEEIKDLEEGAHVREFVMVFAIRRVRARL 57
Cdd:pfam12085  2 DTVDEIVLAIAEETDAPEEEVSRMYDDAVARYSDGARILDYVPVLAARRVRETL 55
 
Name Accession Description Interval E-value
DUF3562 pfam12085
Protein of unknown function (DUF3562); This family of proteins is functionally uncharacterized. ...
 4-57 1.36e-05

Protein of unknown function (DUF3562); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.


Pssm-ID: 432319  Cd Length: 60  Bit Score: 38.24  E-value: 1.36e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 981342880   4 ERWFEPLREVARELAIPEDALKRWLDEEIKDLEEGAHVREFVMVFAIRRVRARL 57
Cdd:pfam12085  2 DTVDEIVLAIAEETDAPEEEVSRMYDDAVARYSDGARILDYVPVLAARRVRETL 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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