|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
178-754 |
1.09e-170 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 506.84 E-value: 1.09e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 178 LLQKHAALFDKNRHAEATALARKLVNDYPEDGACWRALSAS--------LHREGRFAEMIEAGLRTVELLPNEVLVRILL 249
Cdd:COG3914 39 AALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAllelaallLQALGRYEEALALYRRALALNPDNAEALFNL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 250 ADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQE 329
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 330 AIGWLKRAIEINPTDSVTHSSML-------------------------------FCIAHSSEFDPQALVAEHRKFGERYD 378
Cdd:COG3914 199 AIAAYRRALELDPDNADAHSNLLfalrqacdwevydrfeellaalargpselspFALLYLPDDDPAELLALARAWAQLVA 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 379 NQKRKRAAVFSNPRDPARKLQVGFVSGDLYSHAVASYAVPVIEHLAADpGIAMHFYHNHFEEDHTSERFKAHATTWRNVT 458
Cdd:COG3914 279 AAAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLEPLLEHHDRS-RFEIYAYSTGPDDDALTQRLRAAADHWRDIP 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 459 GMSDSAFLERVRNDHIDIVIDLSGHTGRNRLVALAQRAAPVQASWIGYPATTGLAAMDYYLTDRFVAPHGAfDDQFIEQI 538
Cdd:COG3914 358 GLSDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGA-EAYYSEKL 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 539 VRLPAIAPFMPPPNCPPVNVLP------ALHNGYTTYASFNRLNKLSPHVIEVWARVLHADPTARMALGAIGSDGDQQTL 612
Cdd:COG3914 437 VRLPGSYLCYQPNDRAPEVAPLptradlGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGLPEARERL 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 613 TEWFAAAGIDAGRLTFHRRSNIPVYMQQHHGVDLCLDAFPYTGSTTTLNALWMGVPTVTIPGATMAGRGSAGWLQHVGLD 692
Cdd:COG3914 517 RAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLP 596
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 981373853 693 AYIATDEDDFVARALALGRDTAALQALRAGLRARCGESAAFRPAVVAAGLSSALRTMWTRWC 754
Cdd:COG3914 597 ELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRWC 658
|
|
| Glyco_transf_41 |
pfam13844 |
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ... |
348-733 |
8.16e-24 |
|
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.
Pssm-ID: 404688 Cd Length: 543 Bit Score: 106.33 E-value: 8.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 348 HSSMLFCIAHSSEfdpQALVAEHRKFGERYDNQKRKRAAVFsnPRD---PARKLQVGFVSGDLYSHAVAsyavpvieHLA 424
Cdd:pfam13844 33 HHSMLYPLSHDFR---KAIAARHANLCLEKIQILHKPPYKF--PKDlslSGGRLRIGYVSSDFGNHPTS--------HLM 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 425 AD-PGiaMH-------FYHNHFEEDHTSERFKA-----HATTWRNVTGMSDSAflERVRNDHIDIVIDLSGHT--GRNRL 489
Cdd:pfam13844 100 QSiPG--FHdrekvevFCYALSPDDGTNFRSKIareseHFVDLSQIPCNGKAA--DRIHADGIHILVNMNGYTkgARNEI 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 490 VALaqRAAPVQASWIGYPATTGLAAMDYYLTDRFVAPHgAFDDQFIEQIVRLP--------------------------- 542
Cdd:pfam13844 176 FAL--RPAPIQVMWLGYPGTSGASFMDYIITDAVTSPL-ELADQYSEKLAYMPhtffigdhrqmfphlkeraivtdksdg 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 543 ---------------------------------AIAPFMPPPNCPPVNVLPAL--------------------------H 563
Cdd:pfam13844 253 tkvrdnvavvnatdlkpllektevkdkvkevvvVETTGNSRDSSKVEVVLPVIelpttepiesmiqsgqiqtsvngvvvQ 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 564 NGYTT---------------------------------YASFNRLNKLSPHVIEVWARVLHADPTARMAL---GAIGSDG 607
Cdd:pfam13844 333 NGLATtqtnnkaatgeevpssivvttrqqyglpddaivYCNFNQLYKIDPPTLEMWVNILKRVPNSVLWLlrfPAVGEPN 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 608 DQQTLTEwfaaAGIDAGRLTFHrrsniPVYMQQHH---G--VDLCLDAFPYTGSTTTLNALWMGVPTVTIPGATMAGRGS 682
Cdd:pfam13844 413 ILATAQE----LGIPPGRIVFS-----NVAPKEEHvrrGqlADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLASRVA 483
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 981373853 683 AGWLQHVGLDAYIATDEDDFVARALALGRDTAALQALRAGL-RARCgESAAF 733
Cdd:pfam13844 484 ASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVwKART-TSPLF 534
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
206-362 |
4.63e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.07 E-value: 4.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 206 PEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGL 285
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 981373853 286 VLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVTHSSMLFCIAHSSEFD 362
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
184-339 |
2.87e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 87.75 E-value: 2.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 184 ALFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEAD 263
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEAL 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 981373853 264 EQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIE 339
Cdd:COG0457 97 EDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
186-346 |
3.05e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 82.47 E-value: 3.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 186 FDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQ 265
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 266 CTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDS 345
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246
|
.
gi 981373853 346 V 346
Cdd:COG2956 247 L 247
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
184-344 |
7.36e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.70 E-value: 7.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 184 ALFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEAD 263
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 264 EQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPT 343
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
.
gi 981373853 344 D 344
Cdd:COG2956 177 C 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
236-351 |
1.54e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 80.05 E-value: 1.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 236 VELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCG 315
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 981373853 316 TLGFVLLELGATQEAIGWLKRAIEINPTDSVTHSSM 351
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNL 116
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
212-344 |
1.53e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.07 E-value: 1.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 212 WRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALR 291
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 981373853 292 RTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTD 344
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
39-347 |
5.05e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 79.36 E-value: 5.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 39 DDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAAW-IAVEIA- 116
Cdd:TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALaILNEAAd 595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 117 ---------------------QQRGVhgPALNGLIAQL-ASPDIVLATAAVAAAPSGIDAAI------------------ 156
Cdd:TIGR02917 596 aapdspeawlmlgraqlaagdLNKAV--SSFKKLLALQpDSALALLLLADAYAVMKNYAKAItslkralelkpdnteaqi 673
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 157 ---VLETAAGRSDSGKPARRPNQTLLQKHAALFD--------KNRHAEATALARKLVNDYPEDGACWRaLSASLHREGRF 225
Cdd:TIGR02917 674 glaQLLLAAKRTESAKKIAKSLQKQHPKAALGFElegdlylrQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNT 752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 226 AE---MIEAGLRTvelLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRirGLVLFALRRTD-EALAACR 301
Cdd:TIGR02917 753 AEavkTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN--NLAWLYLELKDpRALEYAE 827
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 981373853 302 RAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVT 347
Cdd:TIGR02917 828 RALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
227-345 |
1.02e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.58 E-value: 1.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 227 EMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVEL 306
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 981373853 307 APGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDS 345
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
176-308 |
1.57e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.38 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 176 QTLLQKHAALFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRA 255
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 981373853 256 MNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAP 308
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
193-312 |
1.72e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.81 E-value: 1.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 193 EATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQL 272
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 981373853 273 QPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAA 312
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
188-362 |
7.89e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.45 E-value: 7.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 188 KNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCT 267
Cdd:COG2956 55 RGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 268 RLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVT 347
Cdd:COG2956 135 RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
170
....*....|....*
gi 981373853 348 HSSMLFCIAHSSEFD 362
Cdd:COG2956 215 LPRLAELYEKLGDPE 229
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
33-341 |
5.40e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.14 E-value: 5.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 33 QRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNgyywvsyihalhrsgqTAAAWIA 112
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD----------------AEALRLL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 113 VEIAQQRGvhgpalngliaqlaspdivlataavaaapsgidaaivletaagrsdsgkparrpnqtllqkhaalfdknRHA 192
Cdd:COG2956 117 AEIYEQEG---------------------------------------------------------------------DWE 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 193 EATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQL 272
Cdd:COG2956 128 KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 981373853 273 QPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPcGTLGFVLLELGATQEAIGWLKRAIEIN 341
Cdd:COG2956 208 DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LALADLLERKEGLEAALALLERQLRRH 275
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
245-344 |
2.67e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.83 E-value: 2.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 245 VRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLEL 324
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|
gi 981373853 325 GATQEAIGWLKRAIEINPTD 344
Cdd:COG4783 86 GDYDEALALLEKALKLDPEH 105
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
217-387 |
5.07e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 63.40 E-value: 5.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 217 ASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEA 296
Cdd:COG4785 47 ALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 297 LAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVTHssMLFCIAHSSEFDPQALVAEHRKFGER 376
Cdd:COG4785 127 LEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERA--LWLYLAERKLDPEKALALLLEDWATA 204
|
170
....*....|.
gi 981373853 377 YDNQKRKRAAV 387
Cdd:COG4785 205 YLLQGDTEEAR 215
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
176-312 |
5.31e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.49 E-value: 5.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 176 QTLLQKHAALFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRA 255
Cdd:COG0457 43 EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 981373853 256 MNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAA 312
Cdd:COG0457 123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
253-342 |
1.83e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 1.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 253 LRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAaCRRAVELAPGAAAPCGTLGFVLLELGATQEAIG 332
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 981373853 333 WLKRAIEINP 342
Cdd:COG3063 81 YLERALELDP 90
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
34-396 |
3.27e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 63.95 E-value: 3.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 34 RSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAAwiAV 113
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA--LA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 114 EIAQQRGVHGPALNGLIAQLAspdIVLATAAVAAAPSGIDAAIvletaagrsdsgkpARRPNQTLLQKHAAL--FDKNRH 191
Cdd:TIGR02917 215 AYRKAIALRPNNIAVLLALAT---ILIEAGEFEEAEKHADALL--------------KKAPNSPLAHYLKALvdFQKKNY 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 192 AEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQ 271
Cdd:TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 272 LQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVTHSSM 351
Cdd:TIGR02917 358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 981373853 352 LFCIAHSSEFDpQALVAEhRKFGERYDNQKRK---RAAVFSNPRDPAR 396
Cdd:TIGR02917 438 ILSYLRSGQFD-KALAAA-KKLEKKQPDNASLhnlLGAIYLGKGDLAK 483
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
19-133 |
8.93e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 8.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 19 AQDIALVMENALERQRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIH 98
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 981373853 99 ALHRSGQTAAAWIAVEIAQQRGVHGPALNGLIAQL 133
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
190-342 |
1.68e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.28 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 190 RHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRL 269
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 981373853 270 YQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINP 342
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
35-345 |
4.03e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.10 E-value: 4.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 35 SGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNgyywvsyIHALHrsgqtaaawiave 114
Cdd:TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-------LRAIL------------- 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 115 iaqqrgvhgpALNGLIAQLASPDivlataavaaapsgiDAAIVLETAAGRsDSGKPARRpnqtlLQKHAALFDKNRHAEA 194
Cdd:TIGR02917 538 ----------ALAGLYLRTGNEE---------------EAVAWLEKAAEL-NPQEIEPA-----LALAQYYLGKGQLKKA 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 195 TALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQP 274
Cdd:TIGR02917 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 981373853 275 DHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDS 345
Cdd:TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ 737
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
219-310 |
7.45e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.64 E-value: 7.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 219 LHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEAdEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALA 298
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 981373853 299 ACRRAVELAPGA 310
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
178-308 |
2.09e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.20 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 178 LLQKHAALFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMN 257
Cdd:COG5010 23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 981373853 258 RLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAP 308
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
33-119 |
5.61e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.94 E-value: 5.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 33 QRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPhFEAALGASPDNGYYWVSYIHALHRSGQTAAAWIA 112
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 981373853 113 VEIAQQR 119
Cdd:COG3063 82 LERALEL 88
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
212-348 |
1.24e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.96 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 212 WRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALR 291
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 981373853 292 RTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVTH 348
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY 147
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
32-135 |
2.93e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 32 RQRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAAWI 111
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
90 100
....*....|....*....|....
gi 981373853 112 AVEIAQQRGVHGPALNGLIAQLAS 135
Cdd:COG0457 166 LLEKLEAAALAALLAAALGEAALA 189
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
34-119 |
5.31e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 5.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 34 RSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAAWIAV 113
Cdd:COG4783 50 QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
....*.
gi 981373853 114 EIAQQR 119
Cdd:COG4783 130 EKALEL 135
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
224-362 |
6.98e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 6.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 224 RFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRA 303
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 981373853 304 VELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVTHSSMLFCIAHSSEFD 362
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
57-344 |
8.57e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.78 E-value: 8.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 57 DAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAAWIAVEIAQQRGVHGPALNGLIAQLA-- 134
Cdd:TIGR02917 23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYll 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 135 --SPDIVLATAAVAAAPSGIDAAIVLETAAGRS-DSGKPArRPNQTLLQkhaALFDKNRHAEA-TALARKLVNDYPEDGA 210
Cdd:TIGR02917 103 qgKFQQVLDELPGKTLLDDEGAAELLALRGLAYlGLGQLE-LAQKSYEQ---ALAIDPRSLYAkLGLAQLALAENRFDEA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 211 ----------------CWrALSASLHR-EGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQ 273
Cdd:TIGR02917 179 ralidevltadpgnvdAL-LLKGDLLLsLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKA 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 981373853 274 PDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTD 344
Cdd:TIGR02917 258 PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNS 328
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
29-116 |
8.63e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.78 E-value: 8.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 29 ALERQRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAA 108
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
....*...
gi 981373853 109 AWIAVEIA 116
Cdd:COG0457 129 AIEAYERA 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
53-299 |
1.64e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 53 PAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAAwiaveiaqqrgvhgpalnglIAQ 132
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEA--------------------LAD 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 133 LaspdivlataavaaapsgiDAAIVLETAAGrsdsgkparrpnQTLLQKHAALFDKNRHAEATALARKLVNDYPEDGACW 212
Cdd:COG0457 65 Y-------------------EQALELDPDDA------------EALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 213 RALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRR 292
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAA 193
|
....*..
gi 981373853 293 TDEALAA 299
Cdd:COG0457 194 EVLLALL 200
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
34-89 |
1.56e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 1.56e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 981373853 34 RSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDN 89
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
5-116 |
1.62e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 5 ELPASAALTPEQQLAQDIALVMENALERQRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALG 84
Cdd:COG5010 37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116
|
90 100 110
....*....|....*....|....*....|..
gi 981373853 85 ASPDNGYYWVSYIHALHRSGQTAAAWIAVEIA 116
Cdd:COG5010 117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
6-109 |
1.86e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.83 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 6 LPASAALTPEQQLAQDIALVMENALERQRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGA 85
Cdd:COG4785 57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
|
90 100
....*....|....*....|....
gi 981373853 86 SPDNGYYWVSYIHALHRSGQTAAA 109
Cdd:COG4785 137 DPDYAYAYLNRGIALYYLGRYELA 160
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
40-134 |
2.03e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 40 DARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAAWIAVEIAQQR 119
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....*
gi 981373853 120 GVHGPALNGLIAQLA 134
Cdd:COG4235 81 DPDNPEALYLLGLAA 95
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
184-276 |
2.43e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 184 ALFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEAD 263
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAI 126
|
90
....*....|...
gi 981373853 264 EQCTRLYQLQPDH 276
Cdd:COG4783 127 AALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
20-109 |
2.62e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 20 QDIALVMENALERQRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHA 99
Cdd:COG2956 142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
90
....*....|
gi 981373853 100 LHRSGQTAAA 109
Cdd:COG2956 222 YEKLGDPEEA 231
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
278-351 |
2.97e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 2.97e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 981373853 278 EAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVTHSSM 351
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
184-275 |
3.95e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 184 ALFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAgLRTVELLPNEVLVRILLADTLRAMNRLAEAD 263
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 981373853 264 EQCTRLYQLQPD 275
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
34-134 |
4.60e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 4.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 34 RSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAAWIAV 113
Cdd:COG4235 29 RLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAW 108
|
90 100
....*....|....*....|.
gi 981373853 114 EIAQQRGVHGPALNGLIAQLA 134
Cdd:COG4235 109 QKLLALLPADAPARLLEASIA 129
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
286-351 |
6.01e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 6.01e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 981373853 286 VLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGwLKRAIEINPTDSVTHSSM 351
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
33-109 |
6.14e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 6.14e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 981373853 33 QRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAA 109
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEA 95
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
218-312 |
6.43e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 218 SLHREGRFAEMIEAGLRTVELLPNEVL---VRILLADTLRAMNRLAEADEQCTRLYQLQPDH---PEAMRIRGLVLFALR 291
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELG 81
|
90 100
....*....|....*....|.
gi 981373853 292 RTDEALAACRRAVELAPGAAA 312
Cdd:COG1729 82 DYDKARATLEELIKKYPDSEA 102
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
35-93 |
7.25e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.42 E-value: 7.25e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 981373853 35 SGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYW 93
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
131-274 |
9.99e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 9.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 131 AQLASPDIVLATAAVAAAPSGIDAAIVLETAAGRSDSGKPARRPNQTLLQKHAALFDKNRHAEATALARKLVNDYPEDGA 210
Cdd:COG5010 10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 981373853 211 CWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQP 274
Cdd:COG5010 90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
34-109 |
1.20e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 34 RSGAFDDARALYEAILDAVPAH---GDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIH---ALHRSGQTA 107
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKlglSYLELGDYD 84
|
..
gi 981373853 108 AA 109
Cdd:COG1729 85 KA 86
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
222-312 |
1.44e-04 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 44.43 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 222 EGRFAEMIEAGLRTVEllPNEVLVRILlaDTLRAM----NRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEAL 297
Cdd:COG2912 158 LGPPAELEPEFLAPAS--NREILARML--RNLKAAylreKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAAL 233
|
90
....*....|....*
gi 981373853 298 AACRRAVELAPGAAA 312
Cdd:COG2912 234 EDLEYFLEQCPEDPD 248
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
184-339 |
2.49e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 184 ALFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEAD 263
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 981373853 264 EQCTRLYQLQPDHPEAMRIRGLvLFALRRTDEALAACRRAvelapgaaapcgtLGFVLLELGATQEAIGWLKRAIE 339
Cdd:COG4785 162 ADLEKALELDPNDPERALWLYL-AERKLDPEKALALLLED-------------WATAYLLQGDTEEARELFKLALA 223
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
294-347 |
3.65e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.39 E-value: 3.65e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 981373853 294 DEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEINPTDSVT 347
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYE 70
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
249-340 |
4.28e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.00 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 249 LADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAP-GAAAPCGTLGfvllELGAT 327
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLG----QLSGG 81
|
90
....*....|...
gi 981373853 328 QEAIGWLKRAIEI 340
Cdd:cd24142 82 EEALQYYEKGIEI 94
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
27-118 |
4.76e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.00 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 27 ENALERQRsgaFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGY--YWvsYIHALHrSG 104
Cdd:cd24142 8 EELLDQGN---FELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYekYL--YLGQLS-GG 81
|
90
....*....|....*.
gi 981373853 105 QTAAAWI--AVEIAQQ 118
Cdd:cd24142 82 EEALQYYekGIEILEE 97
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
26-89 |
8.22e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 8.22e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 981373853 26 MENALERQRSGAFDDARALYEAILDAV---PAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDN 89
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
244-362 |
1.10e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.64 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 244 LVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLE 323
Cdd:COG2956 9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88
|
90 100 110
....*....|....*....|....*....|....*....
gi 981373853 324 LGATQEAIGWLKRAIEINPTDSVTHSSMLFCIAHSSEFD 362
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE 127
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
35-342 |
1.54e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 35 SGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPdngyywvsyihalhrsGQTAAAWIAVE 114
Cdd:TIGR02917 206 LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP----------------NSPLAHYLKAL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 115 IAQQRGVHGPALNGLIAQLASpdivlataavaaAPSGIDAAIVLETAAGRSDSGKPARR---------PNQTLLQKHAA- 184
Cdd:TIGR02917 270 VDFQKKNYEDARETLQDALKS------------APEYLPALLLAGASEYQLGNLEQAYQylnqilkyaPNSHQARRLLAs 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 185 -LFDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEAD 263
Cdd:TIGR02917 338 iQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 264 EQCTRLYQLQPDHPEAMRIrgLVLFALRR--TDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIEIN 341
Cdd:TIGR02917 418 ADLETAAQLDPELGRADLL--LILSYLRSgqFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495
|
.
gi 981373853 342 P 342
Cdd:TIGR02917 496 P 496
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
2-298 |
1.92e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.99 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 2 FSTELPASAALtpeQQLAQDIALVMENALE-RQR------SGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAAD 74
Cdd:PRK11447 245 FSDGDSVAAAR---SQLAEQQKQLADPAFRaRAQglaavdSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 75 AVPHFEAALGASPD--NGYYWVSYIhalhrsgQTAAAWIAVEIAQQrgvhgpALN-GLIAQLASpdivLATAAVAAAPSG 151
Cdd:PRK11447 322 AVAQFEKALALDPHssNRDKWESLL-------KVNRYWLLIQQGDA------ALKaNNLAQAER----LYQQARQVDNTD 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 152 IDAAIVLETAAGRSDSGKPARRPNQTLLQKHAAlfdkNRHAeatalARKLVNDY----PEDGACWRA-LSAS-------- 218
Cdd:PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPG----NTNA-----VRGLANLYrqqsPEKALAFIAsLSASqrrsiddi 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 219 ---------------LHREGRFAEMIEAGLRTVELLPNEVLVRILLADTLRAMNRLAEADEQCTRLYQLQPDHPEAMRIR 283
Cdd:PRK11447 456 erslqndrlaqqaeaLENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535
|
330
....*....|....*
gi 981373853 284 GLVLFALRRTDEALA 298
Cdd:PRK11447 536 GLYLSGSDRDRAALA 550
|
|
| PRK15174 |
PRK15174 |
Vi polysaccharide transport protein VexE; |
41-275 |
2.14e-03 |
|
Vi polysaccharide transport protein VexE;
Pssm-ID: 185096 [Multi-domain] Cd Length: 656 Bit Score: 41.65 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 41 ARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGYYWVSYIHALHRSGQTAAawiAVEIAQQRG 120
Cdd:PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ---AISLARTQA 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 121 VHGP------------ALNGLIAQLAspDIVLATAAVAAAPSG---------------IDAAIVLETAAGRSDSGKPARR 173
Cdd:PRK15174 172 QEVPprgdmiatclsfLNKSRLPEDH--DLARALLPFFALERQesaglavdtlcavgkYQEAIQTGESALARGLDGAALR 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 174 PNQTLLQKHAALfDKNRHAEATALARKLVNDYPEDGACWRALSASLHREGRFAEMIEAGLRTVELLPNEVLVRILLADTL 253
Cdd:PRK15174 250 RSLGLAYYQSGR-SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328
|
250 260
....*....|....*....|..
gi 981373853 254 RAMNRLAEADEQCTRLYQLQPD 275
Cdd:PRK15174 329 RQVGQYTAASDEFVQLAREKGV 350
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
279-340 |
2.86e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.37 E-value: 2.86e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 279 AMRIRGLVLFALRRTDEALAACRRAVELA--------PGAAAPCGTLGFVLLELGATQEAIGWLKRAIEI 340
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
260-345 |
3.32e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 40.74 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 260 AEADEQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAAAPCGTLGFVLLELGATQEAIGWLKRAIE 339
Cdd:TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393
|
....*.
gi 981373853 340 INPTDS 345
Cdd:TIGR00990 394 LNSEDP 399
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
248-311 |
4.60e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 4.60e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 981373853 248 LLADTLRAMNRLAEAD---EQCTRLYQLQPDHPEAMRIRGLVLFALRRTDEALAACRRAVELAPGAA 311
Cdd:pfam13432 2 ALARAALRAGDYDDAAaalEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
253-339 |
7.76e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 253 LRAMNRLAEADEQCTRLYQLQPDH---PEAMRIRGLVLFALRRTDEALAACRRAVELAPG---AAAPCGTLGFVLLELGA 326
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGD 82
|
90
....*....|...
gi 981373853 327 TQEAIGWLKRAIE 339
Cdd:COG1729 83 YDKARATLEELIK 95
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
17-123 |
7.81e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 38.74 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981373853 17 QLAQDIALVMEN-ALERQRSGAFDDARALYEAILDAVPAHGDAHYNLAVLLADTGHAADAVPHFEAALGASPDNGY-YWV 94
Cdd:COG4785 101 ELDPDLAEAYNNrGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPErALW 180
|
90 100
....*....|....*....|....*....
gi 981373853 95 SYIHALHRSGQTAAAWIAVEIAQQRGVHG 123
Cdd:COG4785 181 LYLAERKLDPEKALALLLEDWATAYLLQG 209
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
277-309 |
9.92e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.42 E-value: 9.92e-03
10 20 30
....*....|....*....|....*....|...
gi 981373853 277 PEAMRIRGLVLFALRRTDEALAACRRAVELAPG 309
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| |
