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Conserved domains on  [gi|981796136|ref|WP_059986927|]
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cytochrome C [Burkholderia stagnalis]

Protein Classification

c-type cytochrome( domain architecture ID 10008682)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; such as Pseudomonas aeruginosa cytochrome c-551 that functions as the electron donor for cytochrome cd1 in nitrite and nitrate respiration

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
23-111 4.14e-23

Cytochrome c551/c552 [Energy production and conversion];


:

Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 84.95  E-value: 4.14e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981796136  23 TAVPEPTELVDAQHCMFCHTPDMPFLAPSFHQIAERYRDVPRAQEQLEIKLRLGGRAHWGDTPMPSAAErggpLSRDDAR 102
Cdd:COG4654    2 ADAAAGKALAKKSGCLACHAVDKKLVGPSYKDVAKKYKGKADAVAKLAKKIKKGGSGVWGDVPMPPHPQ----LSDAEAK 77


                 ....*....
gi 981796136 103 RLVQWVLSQ 111
Cdd:COG4654   78 ALVKWILSL 86
 
Name Accession Description Interval E-value
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
23-111 4.14e-23

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 84.95  E-value: 4.14e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981796136  23 TAVPEPTELVDAQHCMFCHTPDMPFLAPSFHQIAERYRDVPRAQEQLEIKLRLGGRAHWGDTPMPSAAErggpLSRDDAR 102
Cdd:COG4654    2 ADAAAGKALAKKSGCLACHAVDKKLVGPSYKDVAKKYKGKADAVAKLAKKIKKGGSGVWGDVPMPPHPQ----LSDAEAK 77


                 ....*....
gi 981796136 103 RLVQWVLSQ 111
Cdd:COG4654   78 ALVKWILSL 86
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 34-110 6.85e-03

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 33.28  E-value: 6.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981796136   34 AQHCMFCHTPD---MPFLAPSFHQIAERYRDVPRAQEQLEIKLRLGGRAHWGDTPMPSAAERGGPLSRDDARRLVQWVLS 110
Cdd:pfam00034   8 AANCAACHGVNgegAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAGGPPGTGMPAFDGLTDEEIADLVAYLLS 87
 
Name Accession Description Interval E-value
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
23-111 4.14e-23

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 84.95  E-value: 4.14e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981796136  23 TAVPEPTELVDAQHCMFCHTPDMPFLAPSFHQIAERYRDVPRAQEQLEIKLRLGGRAHWGDTPMPSAAErggpLSRDDAR 102
Cdd:COG4654    2 ADAAAGKALAKKSGCLACHAVDKKLVGPSYKDVAKKYKGKADAVAKLAKKIKKGGSGVWGDVPMPPHPQ----LSDAEAK 77


                 ....*....
gi 981796136 103 RLVQWVLSQ 111
Cdd:COG4654   78 ALVKWILSL 86
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 34-110 6.85e-03

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 33.28  E-value: 6.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981796136   34 AQHCMFCHTPD---MPFLAPSFHQIAERYRDVPRAQEQLEIKLRLGGRAHWGDTPMPSAAERGGPLSRDDARRLVQWVLS 110
Cdd:pfam00034   8 AANCAACHGVNgegAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAGGPPGTGMPAFDGLTDEEIADLVAYLLS 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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