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Conserved domains on  [gi|983529562|ref|WP_060681302|]
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hypothetical protein [Virgibacillus halodenitrificans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COX4_pro super family cl01204
Prokaryotic Cytochrome C oxidase subunit IV; Cytochrome c oxidase (COX) is a multi-subunit ...
 13-60 2.11e-03

Prokaryotic Cytochrome C oxidase subunit IV; Cytochrome c oxidase (COX) is a multi-subunit enzyme complex that catalyzes the final step of electron transfer through the respiratory chain on the mitochondrial inner membrane. This family is composed of cytochrome c oxidase subunit 4 from prokaryotes.


The actual alignment was detected with superfamily member TIGR02901:

Pssm-ID: 445313  Cd Length: 94  Bit Score: 33.18  E-value: 2.11e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 983529562  13 WKPMFLFIACIILTAFSLGGFLYSSYEPKFILLIITVLAFIQAMFQLF 60
Cdd:TIGR02901  7 WKHVMGFILSLILTLLALWVAFYSDLSLVVGLTIIIVFAFIQASLQLI 54
 
Name Accession Description Interval E-value
QoxD TIGR02901
cytochrome aa3 quinol oxidase, subunit IV; This family (QoxD) encodes subunit IV of the ...
 13-60 2.11e-03

cytochrome aa3 quinol oxidase, subunit IV; This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 200218  Cd Length: 94  Bit Score: 33.18  E-value: 2.11e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 983529562  13 WKPMFLFIACIILTAFSLGGFLYSSYEPKFILLIITVLAFIQAMFQLF 60
Cdd:TIGR02901  7 WKHVMGFILSLILTLLALWVAFYSDLSLVVGLTIIIVFAFIQASLQLI 54
 
Name Accession Description Interval E-value
QoxD TIGR02901
cytochrome aa3 quinol oxidase, subunit IV; This family (QoxD) encodes subunit IV of the ...
 13-60 2.11e-03

cytochrome aa3 quinol oxidase, subunit IV; This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 200218  Cd Length: 94  Bit Score: 33.18  E-value: 2.11e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 983529562  13 WKPMFLFIACIILTAFSLGGFLYSSYEPKFILLIITVLAFIQAMFQLF 60
Cdd:TIGR02901  7 WKHVMGFILSLILTLLALWVAFYSDLSLVVGLTIIIVFAFIQASLQLI 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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