|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-420 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 729.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 1 MFENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGTEVSKSLTPGQEFIKIVQA 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 81 ELEAVMGEGNEALDLSCQPPAVILMAGLQGAGKTTSVGKLGKLLKeRDKKKVLVVSADVYRPAAIKQLETLAADVGVDFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLK-KKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 161 PSTVEQKPLTIVKAALEHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILGMGDVLSLIEDLERNVDkKEAEKLA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAID-EEEAEKL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 321 KKFKDKKGFDLEDFRSQLQQMKNMGGMMGMLDKLPGMSQLPGDMKDKVDDKIFVQMEAIINSMTKGERARPELIKGSRKK 400
Cdd:COG0541 319 AKKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|
gi 992021607 401 RIAAGSGTQVQDVNRLLKQF 420
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQF 418
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-421 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 560.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 2 FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGTEVSKSLTPGQEFIKIVQAE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 82 LEAVMGEGNEALDLSCQPPAVILMAGLQGAGKTTSVGKLGKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 162 STVEQKPLTIVKAALEHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 242 LTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILGMGDVLSLIEDLERNVDkKEAEKLAK 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVD-EEEAKKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 322 KFKDKKGFDLEDFRSQLQQMKNMGGMMGMLDKLPGMSQLPGDMKD-KVDDKIFVQMEAIINSMTKGERARPELIKGSRKK 400
Cdd:TIGR00959 320 EKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDaDLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|.
gi 992021607 401 RIAAGSGTQVQDVNRLLKQFT 421
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFE 420
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-420 |
1.99e-145 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 422.31 E-value: 1.99e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 5 LTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGTEVSKSLTPGQEFIKIVQAELEA 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 85 VMGEGNEALDLSCQPpAVILMAGLQGAGKTTSVGKLGKLLKERDKKkVLVVSADVYRPAAIKQLETLAADVGVDFFPSTV 164
Cdd:PRK00771 81 LLGEETEPLVLPLKP-QTIMLVGLQGSGKTTTAAKLARYFKKKGLK-VGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 165 EQKPLTIVKAALEhgKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTG 244
Cdd:PRK00771 159 NKDAVEIAKEGLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 245 VILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILGMGDVLSLIEDLERNVDkKEAEKLAKKFK 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALD-EEEEEKDVEKM 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 325 DKKGFDLEDFRSQLQQMKNMGGMMGMLDKLPGMS-QLPGDMKDKVDDKIfVQMEAIINSMTKGERARPELIKGSRKKRIA 403
Cdd:PRK00771 316 MKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPDEALEVTEEKL-KKYKAIMDSMTEEELENPEIINASRIRRIA 394
|
410
....*....|....*..
gi 992021607 404 AGSGTQVQDVNRLLKQF 420
Cdd:PRK00771 395 RGSGTTVEDVRELLKYY 411
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
3.94e-115 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 335.72 E-value: 3.94e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 101 AVILMAGLQGAGKTTSVGKLGKLLKERdKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHGK 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKK-GKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 181 TKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 992021607 261 SVRHITGKPIKFLGIGEKTDALEPFHPDRVASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
1.74e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 313.96 E-value: 1.74e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 100 PAVILMAGLQGAGKTTSVGKLGKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHG 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 180 KTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 992021607 260 LSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
3.52e-97 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 289.83 E-value: 3.52e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLGKLLKeRDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHGKT 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLK-KKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 182 KFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 992021607 262 VRHITGKPIKFLGIGEKTDALEPFHPDRVASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-420 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 729.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 1 MFENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGTEVSKSLTPGQEFIKIVQA 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 81 ELEAVMGEGNEALDLSCQPPAVILMAGLQGAGKTTSVGKLGKLLKeRDKKKVLVVSADVYRPAAIKQLETLAADVGVDFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLK-KKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 161 PSTVEQKPLTIVKAALEHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILGMGDVLSLIEDLERNVDkKEAEKLA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAID-EEEAEKL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 321 KKFKDKKGFDLEDFRSQLQQMKNMGGMMGMLDKLPGMSQLPGDMKDKVDDKIFVQMEAIINSMTKGERARPELIKGSRKK 400
Cdd:COG0541 319 AKKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|
gi 992021607 401 RIAAGSGTQVQDVNRLLKQF 420
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQF 418
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-421 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 560.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 2 FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGTEVSKSLTPGQEFIKIVQAE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 82 LEAVMGEGNEALDLSCQPPAVILMAGLQGAGKTTSVGKLGKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 162 STVEQKPLTIVKAALEHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 242 LTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILGMGDVLSLIEDLERNVDkKEAEKLAK 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVD-EEEAKKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 322 KFKDKKGFDLEDFRSQLQQMKNMGGMMGMLDKLPGMSQLPGDMKD-KVDDKIFVQMEAIINSMTKGERARPELIKGSRKK 400
Cdd:TIGR00959 320 EKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDaDLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|.
gi 992021607 401 RIAAGSGTQVQDVNRLLKQFT 421
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFE 420
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-420 |
1.99e-145 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 422.31 E-value: 1.99e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 5 LTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGTEVSKSLTPGQEFIKIVQAELEA 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 85 VMGEGNEALDLSCQPpAVILMAGLQGAGKTTSVGKLGKLLKERDKKkVLVVSADVYRPAAIKQLETLAADVGVDFFPSTV 164
Cdd:PRK00771 81 LLGEETEPLVLPLKP-QTIMLVGLQGSGKTTTAAKLARYFKKKGLK-VGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 165 EQKPLTIVKAALEhgKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTG 244
Cdd:PRK00771 159 NKDAVEIAKEGLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 245 VILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILGMGDVLSLIEDLERNVDkKEAEKLAKKFK 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALD-EEEEEKDVEKM 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 325 DKKGFDLEDFRSQLQQMKNMGGMMGMLDKLPGMS-QLPGDMKDKVDDKIfVQMEAIINSMTKGERARPELIKGSRKKRIA 403
Cdd:PRK00771 316 MKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPDEALEVTEEKL-KKYKAIMDSMTEEELENPEIINASRIRRIA 394
|
410
....*....|....*..
gi 992021607 404 AGSGTQVQDVNRLLKQF 420
Cdd:PRK00771 395 RGSGTTVEDVRELLKYY 411
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
3.94e-115 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 335.72 E-value: 3.94e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 101 AVILMAGLQGAGKTTSVGKLGKLLKERdKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHGK 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKK-GKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 181 TKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 992021607 261 SVRHITGKPIKFLGIGEKTDALEPFHPDRVASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
1.74e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 313.96 E-value: 1.74e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 100 PAVILMAGLQGAGKTTSVGKLGKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHG 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 180 KTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 992021607 260 LSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
3.52e-97 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 289.83 E-value: 3.52e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLGKLLKeRDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHGKT 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLK-KKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 182 KFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 992021607 262 VRHITGKPIKFLGIGEKTDALEPFHPDRVASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
101-294 |
6.59e-89 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 268.86 E-value: 6.59e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 101 AVILMAGLQGAGKTTSVGKLGKLLKERdKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHGK 180
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEK-GKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 181 TKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAAL 260
Cdd:cd03115 80 LEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 992021607 261 SVRHITGKPIKFLGIGEKTDALEPFHPDRVASRI 294
Cdd:cd03115 160 SIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
1-296 |
4.88e-87 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 268.04 E-value: 4.88e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 1 MFENLTERLSRT-------LKNVSGRGRLTDDnikDTLREVRMALLEADVALPVVREFVKRVKERAVGtevsKSLTPGQE 73
Cdd:COG0552 1 FFERLKEGLSKTrsglgekLKSLFSGKKKIDE---DLLEELEELLIEADVGVETTEEIIEELRERVKR----KKLKDPEE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 74 FIKIVQAELEAVMGEGNEALDLSCQPPAVILMAGLQGAGKTTSVGKLGKLLKERDKKkVLVVSADVYRPAAIKQLETLAA 153
Cdd:COG0552 74 LKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKS-VLLAAGDTFRAAAIEQLEVWGE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 154 DVGVDFfpstVEQK----PLTIVKAALEHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALN------PVETLFVVDA 223
Cdd:COG0552 153 RVGVPV----IAQKegadPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDA 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 992021607 224 MTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILG 296
Cdd:COG0552 229 TTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
1-296 |
1.82e-75 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 238.84 E-value: 1.82e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 1 MFENLTERLSRTLKNVSGR--GRLTDDNI-KDTLREVRMALLEADVALPVVREFVKRVKERAVGtevsKSLTPGQEFIKI 77
Cdd:PRK10416 16 WFERLKKGLSKTRENFGEGinGLFAKKKIdEDLLEELEELLIEADVGVETTEEIIEELRERVKR----KNLKDPEELKEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 78 VQAELEAVMGEGNEALDLSCQPPAVILMAGLQGAGKTTSVGKLGKLLKERDKKkVLVVSADVYRPAAIKQLETLAADVGV 157
Cdd:PRK10416 92 LKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK-VLLAAGDTFRAAAIEQLQVWGERVGV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 158 DFfpstVEQK----PLTIVKAALEHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALN------PVETLFVVDAMTGQ 227
Cdd:PRK10416 171 PV----IAQKegadPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVLDATTGQ 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 992021607 228 DAANTAKAFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILG 296
Cdd:PRK10416 247 NALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-296 |
2.12e-71 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 229.09 E-value: 2.12e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 21 RLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGTEVSKSLTPGQEFIKIVQAELEAVMGEGNEALDL----S 96
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIeeikS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 97 CQPPAVILMAGLQGAGKTTSVGKLGKLLKERdKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAAL 176
Cdd:PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 177 EHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARG 256
Cdd:PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKG 295
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 992021607 257 GAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILG 296
Cdd:PRK14974 296 GAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
4-421 |
6.07e-69 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 225.48 E-value: 6.07e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 4 NLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGTEVSKSLTPGQEFIKIVQAELE 83
Cdd:TIGR01425 4 QLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 84 AVMGEGNEALDLSCQPPAVILMAGLQGAGKTTSVGKLGKLLKERDKKkVLVVSADVYRPAAIKQLETLAADVGVDFFPST 163
Cdd:TIGR01425 84 NLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFK-PALVCADTFRAGAFDQLKQNATKAGIPFYGSY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 164 VEQKPLTIVKAALEHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLT 243
Cdd:TIGR01425 163 EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 244 GVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRILGMGDVLSLIeDLERNVDKKEAEKLAKKF 323
Cdd:TIGR01425 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLI-DKVQDLALNDEEKTLIEH 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 324 KDKKGFDLEDFRSQLQQMKNMGGMMGMLDKLPGMSQ--LPGDMKDKVDDKIFVQMeAIINSMTKGE---RARPELIKGSR 398
Cdd:TIGR01425 322 LKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHpmMSKGNEEETSAKIKVFM-TIMDSMTDREldsTAKTMLKDPSR 400
|
410 420
....*....|....*....|...
gi 992021607 399 KKRIAAGSGTQVQDVNRLLKQFT 421
Cdd:TIGR01425 401 IRRVARGSGRDIREVNELLEQYK 423
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
25-295 |
4.76e-68 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 218.28 E-value: 4.76e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 25 DNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGtevsKSLTPGQEFIKIVQAEL-EAVMGEGNEALDLSCQP---- 99
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKG----KKVKDAEKLKEILKEYLkEILKEDLLKNTDLELIVeenk 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 100 PAVILMAGLQGAGKTTSVGKLGKLLKErDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHG 179
Cdd:TIGR00064 77 PNVILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 180 KTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKAL------NPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGD 253
Cdd:TIGR00064 156 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIkkvdkdAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGT 235
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 992021607 254 ARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVASRIL 295
Cdd:TIGR00064 236 AKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
4.80e-66 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 210.13 E-value: 4.80e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLGKLLKERDKKkVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHGKT 181
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYK-VGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 182 KFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 992021607 262 VRHITGKPIKFLGIGEKTDALEPFHPDRVASRI 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
101-288 |
8.21e-64 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 204.73 E-value: 8.21e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 101 AVILMAGLQGAGKTTSVGKLGKLLKERdKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHGK 180
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQ-GKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 181 TKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALN------PVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDA 254
Cdd:cd17874 80 ARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTA 159
|
170 180 190
....*....|....*....|....*....|....
gi 992021607 255 RGGAALSVRHITGKPIKFLGIGEKTDALEPFHPD 288
Cdd:cd17874 160 KGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPE 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
102-292 |
1.43e-37 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 135.82 E-value: 1.43e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLGKLLKErDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEQKPLTIVKAALEHGKT 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLS-NGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 182 KFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDAL----------PLTGVILTKVD 251
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 992021607 252 G-DARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPDRVAS 292
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVN 202
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
7-296 |
9.18e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 138.07 E-value: 9.18e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 7 ERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAvgtevsksltPGQEFIKIVQAELEAVM 86
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEALARRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 87 GEGNEALdlsCQPPAVILMAGLQGAGKTTSVGKLGKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTvEQ 166
Cdd:COG1419 154 PVAEDPL---LDEGGVIALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAY-DP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 167 KPLTIVKAALEHgktkfYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDA-MTGQDAANTAKAFNDaLPLTGV 245
Cdd:COG1419 230 EELKEALERLRD-----KDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAFSS-LGLDGL 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 992021607 246 ILTKVDGDARGGAALSVRHITGKPIKFLGIGEK-TDALEPFHPDRVASRILG 296
Cdd:COG1419 304 ILTKLDETASLGSILNLLIRTGLPLSYITNGQRvPEDIEVADPERLARLLLG 355
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
331-420 |
9.68e-34 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 122.12 E-value: 9.68e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 331 LEDFRSQLQQMKNMGGMMGMLDKLPGMSQLPGDMKDkvdDKIFVQMEAIINSMTKGERARPELIKGSRKKRIAAGSGTQV 410
Cdd:pfam02978 4 LRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDIDS---EKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSGTSV 80
|
90
....*....|
gi 992021607 411 QDVNRLLKQF 420
Cdd:pfam02978 81 QEVNRLLKQF 90
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
102-294 |
2.28e-28 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 110.72 E-value: 2.28e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLGKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVdffpstveqkPLTIV------KAA 175
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAedpedlADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 176 LEHGKTkfYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMT-GQDAANTAKAFNdALPLTGVILTKVDGDA 254
Cdd:cd17873 72 LERLSD--RDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERFS-PLGYRGLILTKLDETT 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 992021607 255 RGGAALSVRHITGKPIKFLGIGEKT-DALEPFHPDRVASRI 294
Cdd:cd17873 149 SLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
3.62e-21 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 87.14 E-value: 3.62e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 992021607 5 LTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGtevSKSLTPGQEFIKIVQAEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVG---EKKLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
7.14e-20 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 83.37 E-value: 7.14e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 992021607 9 LSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVGtEVSKSLTPGQEFIKIVQAELEAVM 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
38-296 |
2.34e-19 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 89.95 E-value: 2.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 38 LLEADVALPVVREFVKRVKER--AVGTEVSKSLTpgQEFIKIVQAELEAVMGEGNealdlscqppaVILMAGLQGAGKTT 115
Cdd:PRK05703 170 LKRSGLSPEIAEKLLKLLLEHmpPRERTAWRYLL--ELLANMIPVRVEDILKQGG-----------VVALVGPTGVGKTT 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 116 SVGKL-GKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVdffpstveqkPLTIVK------AALEhgKTKFYDVVI 188
Cdd:PRK05703 237 TLAKLaARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI----------PVEVVYdpkelaKALE--QLRDCDVIL 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 189 VDTAGRLHVDEEMMDEIKD-VHKALNPVETlFVVDAMTGQ--DAANTAKAFNDaLPLTGVILTKVDGDARGGAALSVRHI 265
Cdd:PRK05703 305 IDTAGRSQRDKRLIEELKAlIEFSGEPIDV-YLVLSATTKyeDLKDIYKHFSR-LPLDGLIFTKLDETSSLGSILSLLIE 382
|
250 260 270
....*....|....*....|....*....|..
gi 992021607 266 TGKPIKFLGIG-EKTDALEPFHPDRVASRILG 296
Cdd:PRK05703 383 SGLPISYLTNGqRVPDDIKVANPEELVRLLLG 414
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
102-277 |
3.08e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 71.15 E-value: 3.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLGKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPStveqKPLTIVKAALEHGKT 181
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV----KDIKKFKETLARDGS 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 182 kfyDVVIVDTAGRLHVDEEMMDEIKDVHKAL---NPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGA 258
Cdd:PRK12724 301 ---ELILIDTAGYSHRNLEQLERMQSFYSCFgekDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGS 377
|
170
....*....|....*....
gi 992021607 259 ALSVRHITGKPIKFLGIGE 277
Cdd:PRK12724 378 FLELADTYSKSFTYLSVGQ 396
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
102-312 |
8.28e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 63.86 E-value: 8.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLGKLLKERDK-KKVLVVSADVYRPAAIKQLETLAADVGVdffpSTVEQKPLTIVKAALEhgK 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHApRDVALVTTDTQRVGGREQLHSYGRQLGI----AVHEADSAESLLDLLE--R 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 181 TKFYDVVIVDTAGRLHVDEEMMDEIKDVhKALNPVETLFVVDAMTG-QDAANTAKAFNDALPlTGVILTKVDGDARGGAA 259
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAHfSDLDEVVRRFAHAKP-QGVVLTKLDETGRFGSA 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 992021607 260 LSVRHITGKPIKFLGIGEktDALEPFHPDRVASRILGMgdvlsliEDLERNVD 312
Cdd:PRK12727 504 LSVVVDHQMPITWVTDGQ--RVPDDLHRANAASLVLRL-------EDLRRAAD 547
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
50-277 |
1.13e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 63.22 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 50 EFVKRVKERAVG-TEVSKSLTPG-QEFIKIVQAELEAVMG----------EGNEALDLSCQppAVILMAGLQGAGKTTSV 117
Cdd:PRK12726 146 DFVKFLKGRGISdTYVADFMQAGrKQFKQVETAHLDDITDwfvpylsgklAVEDSFDLSNH--RIISLIGQTGVGKTTTL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 118 GKLG-KLLKErdKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTveqKPLTIVKAALEHGKTKFYDVVIVDTAGRLH 196
Cdd:PRK12726 224 VKLGwQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT---SPAELEEAVQYMTYVNCVDHILIDTVGRNY 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 197 VDEEMMDEIKDVHKALNPVETLFVVDA-MTGQDAANTAKAFNDaLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGI 275
Cdd:PRK12726 299 LAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 377
|
..
gi 992021607 276 GE 277
Cdd:PRK12726 378 GQ 379
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
101-278 |
4.43e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 58.19 E-value: 4.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 101 AVILMAGLQGAGKTTSVGKLG-KLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVdffpstveqkPLTIVKAA---- 175
Cdd:PRK14722 138 GVFALMGPTGVGKTTTTAKLAaRCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV----------PVHAVKDGgdlq 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 176 LEHGKTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAAN-TAKAFND-------ALP-LTGVI 246
Cdd:PRK14722 208 LALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSaagqpkaALPdLAGCI 287
|
170 180 190
....*....|....*....|....*....|..
gi 992021607 247 LTKVDGDARGGAALSVRHITGKPIKFLGIGEK 278
Cdd:PRK14722 288 LTKLDEASNLGGVLDTVIRYKLPVHYVSTGQK 319
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
103-277 |
9.22e-09 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 57.38 E-value: 9.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 103 ILMAGLQGAGKTTSVGKLGKLLKERdKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTVEqkpltivkAALEHGKTK 182
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE--------AAMTRALTY 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 183 F-----YDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDA-MTGQDAANTAKAFNDaLPLTGVILTKVDGDARG 256
Cdd:PRK11889 315 FkeearVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASS 393
|
170 180
....*....|....*....|.
gi 992021607 257 GAALSVRHITGKPIKFLGIGE 277
Cdd:PRK11889 394 GELLKIPAVSSAPIVLMTDGQ 414
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
110-275 |
4.58e-08 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 53.50 E-value: 4.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 110 GAGKTTSVGKLGKLLKERdKKKVLVVSADVYRPAA--------IKQLETLAADV-------------------GVDFFPS 162
Cdd:pfam01656 9 GVGKTTLAANLARALARR-GLRVLLIDLDPQSNNSsveglegdIAPALQALAEGlkgrvnldpillkeksdegGLDLIPG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 163 TVE----------QKPLTIVKAALEHGKtKFYDVVIVDTAGRLHvdEEMMDEIKDVHKALNPV--ETLFVVDAM-TGQDA 229
Cdd:pfam01656 88 NIDlekfekellgPRKEERLREALEALK-EDYDYVIIDGAPGLG--ELLRNALIAADYVIIPLepEVILVEDAKrLGGVI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 992021607 230 ANTAKAFNDA-LPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGI 275
Cdd:pfam01656 165 AALVGGYALLgLKIIGVVLNKVDGDNHGKLLKEALEELLRGLPVLGV 211
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
103-277 |
7.11e-07 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 50.52 E-value: 7.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 103 ILMAGLQGAGKTTSVGKLGKLLKERdKKKVLVVSADVYRPAAIKQLETLAADVGvdfFPSTVEQKPLTIVKAALEHGKTK 182
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTYFKEEA 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 183 FYDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDA-MTGQDAANTAKAFNDaLPLTGVILTKVDGDARGGAALS 261
Cdd:PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLK 232
|
170
....*....|....*.
gi 992021607 262 VRHITGKPIKFLGIGE 277
Cdd:PRK06731 233 IPAVSSAPIVLMTDGQ 248
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
99-212 |
9.23e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.52 E-value: 9.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 99 PPAVILMAGLQGAGKTTSVGKLGKLLKeRDKKKVLVVSADVYRPAAIKQLETLaaDVGVDFFPSTVEQKPLTIVKAALEH 178
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-PPGGGVIYIDGEDILEEVLDQLLLI--IVGGKKASGSGELRLRLALALARKL 77
|
90 100 110
....*....|....*....|....*....|....
gi 992021607 179 GktkfYDVVIVDTAGRLHVDEEMMDEIKDVHKAL 212
Cdd:smart00382 78 K----PDVLILDEITSLLDAEQEALLLLLEELRL 107
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
100-277 |
8.55e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 47.97 E-value: 8.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 100 PAVILMAGLQGAGKTTSVGKLGKL--LKERDKKK-VLVVSADVYRPAAIKQLETLAADVGVDFfpSTVE-----QKPLTI 171
Cdd:PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIygINSDDKSLnIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAIEsfkdlKEEITQ 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 172 vkaalehgkTKFYDVVIVDTAGRLHVDEEMMDEIKDVHKAL-NPVETLFVVDAMTgqDAANTAKAFNDALPL--TGVILT 248
Cdd:PRK12723 252 ---------SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACgRDAEFHLAVSSTT--KTSDVKEIFHQFSPFsyKTVIFT 320
|
170 180
....*....|....*....|....*....
gi 992021607 249 KVDGDARGGAALSVRHITGKPIKFLGIGE 277
Cdd:PRK12723 321 KLDETTCVGNLISLIYEMRKEVSYVTDGQ 349
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
102-278 |
1.62e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 47.49 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLGKLLKERD-KKKVLVVSADVYRPAAIKQLETLAADVGVdffpstveqkPLTIVK------A 174
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREgADQLALLTTDSFRIGALEQLRIYGRILGV----------PVHAVKdaadlrF 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 175 ALEHGKTKfyDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAAN-TAKAF-NDALP-LTGVILTKVD 251
Cdd:PRK14723 257 ALAALGDK--HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYrHGAGEdVDGCIITKLD 334
|
170 180
....*....|....*....|....*....
gi 992021607 252 GDARGGAALSV--RHITgkPIKFLGIGEK 278
Cdd:PRK14723 335 EATHLGPALDTviRHRL--PVHYVSTGQK 361
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
102-262 |
5.03e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 45.33 E-value: 5.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 102 VILMAGLQGAGKTTSVGKLG-KLLKERDKKKVLVVSADVYRPAAIKQLETLAADVGVdffpSTVEQKPLTIVKAALEHGK 180
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAaRAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGV----SVRSIKDIADLQLMLHELR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021607 181 TKfyDVVIVDTAGRLHVDEEMMDEIKDVHKALNPVETLFVVDAMTGQDAANTAKAFNDALPLTGVILTKVDGDARGGAAL 260
Cdd:PRK14721 269 GK--HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIAL 346
|
..
gi 992021607 261 SV 262
Cdd:PRK14721 347 DA 348
|
|
| |
