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MULTISPECIES: ribosome maturation factor RimM [Photobacterium]

Protein Classification

ribosome maturation factor RimM( domain architecture ID 11478117)

ribosome maturation factor RimM is an accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region

Gene Ontology:  GO:0043022|GO:0042274
PubMed:  23293003

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 3-177 4.44e-74

16S rRNA-processing protein RimM; Provisional


:

Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 220.01  E-value: 4.44e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   3 IKDQDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMIKIKGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFT 82
Cdd:PRK00122   2 SKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612  83 NAEVAVLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLVVKANlkdafGQKERLIPFLdEQVIKLI 162
Cdd:PRK00122  82 GCELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLKD-----KKEERLIPFV-EEVVKEV 155

                        170
                 ....*....|....*
gi 992021612 163 DRTAQRIEVDWDPDF 177
Cdd:PRK00122 156 DLEAKRITVDWPEGL 170
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 3-177 4.44e-74

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 220.01  E-value: 4.44e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   3 IKDQDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMIKIKGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFT 82
Cdd:PRK00122   2 SKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612  83 NAEVAVLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLVVKANlkdafGQKERLIPFLdEQVIKLI 162
Cdd:PRK00122  82 GCELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLKD-----KKEERLIPFV-EEVVKEV 155

                        170
                 ....*....|....*
gi 992021612 163 DRTAQRIEVDWDPDF 177
Cdd:PRK00122 156 DLEAKRITVDWPEGL 170
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 3-177 2.25e-67

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 203.03  E-value: 2.25e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   3 IKDQDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMIKI-KGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVF 81
Cdd:COG0806    1 MKMEDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDpDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612  82 TNAEVAVLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLVVKanlkdAFGQKERLIPFLDEqVIKL 161
Cdd:COG0806   81 RGAELYVPRDDLPELEEDEFYWHDLIGLEVVDEDGEELGKVTDVLETGANDVLVVK-----GPGGKEVLIPFVDE-FVPE 154

                        170
                 ....*....|....*.
gi 992021612 162 IDRTAQRIEVDWDPDF 177
Cdd:COG0806  155 VDLEAGRIVVDPPEGL 170
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 9-176 2.66e-62

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 189.73  E-value: 2.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612    9 IIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMI-KIKGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFTNAEVA 87
Cdd:TIGR02273   2 LVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLIlKGSKQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLELF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   88 VLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLVVKAnlkdAFGQKERLIPFLdEQVIKLIDRTAQ 167
Cdd:TIGR02273  82 VPREALPELEEDEYYWTDLIGLEVVTEEGEELGKVVEILETGANDVLVVRS----KKGKKEVLIPFV-EEIVKEIDLEKK 156


                  ....*....
gi 992021612  168 RIEVDWDPD 176
Cdd:TIGR02273 157 IITVDWPEG 165
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 10-92 2.77e-25

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 93.01  E-value: 2.77e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   10 IVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMIKI-KGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFTNAEVAV 88
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKkKGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 992021612   89 LADQ 92
Cdd:pfam01782  81 PRSD 84
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 3-177 4.44e-74

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 220.01  E-value: 4.44e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   3 IKDQDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMIKIKGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFT 82
Cdd:PRK00122   2 SKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612  83 NAEVAVLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLVVKANlkdafGQKERLIPFLdEQVIKLI 162
Cdd:PRK00122  82 GCELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLKD-----KKEERLIPFV-EEVVKEV 155

                        170
                 ....*....|....*
gi 992021612 163 DRTAQRIEVDWDPDF 177
Cdd:PRK00122 156 DLEAKRITVDWPEGL 170
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 3-177 2.25e-67

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 203.03  E-value: 2.25e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   3 IKDQDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMIKI-KGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVF 81
Cdd:COG0806    1 MKMEDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDpDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612  82 TNAEVAVLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLVVKanlkdAFGQKERLIPFLDEqVIKL 161
Cdd:COG0806   81 RGAELYVPRDDLPELEEDEFYWHDLIGLEVVDEDGEELGKVTDVLETGANDVLVVK-----GPGGKEVLIPFVDE-FVPE 154

                        170
                 ....*....|....*.
gi 992021612 162 IDRTAQRIEVDWDPDF 177
Cdd:COG0806  155 VDLEAGRIVVDPPEGL 170
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 9-176 2.66e-62

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 189.73  E-value: 2.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612    9 IIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMI-KIKGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFTNAEVA 87
Cdd:TIGR02273   2 LVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLIlKGSKQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLELF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   88 VLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLVVKAnlkdAFGQKERLIPFLdEQVIKLIDRTAQ 167
Cdd:TIGR02273  82 VPREALPELEEDEYYWTDLIGLEVVTEEGEELGKVVEILETGANDVLVVRS----KKGKKEVLIPFV-EEIVKEIDLEKK 156


                  ....*....
gi 992021612  168 RIEVDWDPD 176
Cdd:TIGR02273 157 IITVDWPEG 165
rimM PRK14591
16S rRNA-processing protein RimM; Provisional
 6-177 1.11e-29

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173055 [Multi-domain]  Cd Length: 169  Bit Score: 107.05  E-value: 1.11e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   6 QDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMIKIKGE--WKEIHVESWKRHGQGLVAKLEGMDIREDAQVFTN 83
Cdd:PRK14591   3 QDFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATnvWQQLKGESVLKRADKVYIKLANINNADTAKKYVN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612  84 AEVAVLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLVVKANlkdafgQKERLIPFLdEQVIKLID 163
Cdd:PRK14591  83 ALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVDIIETGANEVLVCKED------NSEYLIPYV-KQYIVSED 155

                        170
                 ....*....|....
gi 992021612 164 RTAQRIEVDWDPDF 177
Cdd:PRK14591 156 LNSKKIVVDWEYDY 169
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 10-92 2.77e-25

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 93.01  E-value: 2.77e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   10 IVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWMIKI-KGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFTNAEVAV 88
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKkKGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 992021612   89 LADQ 92
Cdd:pfam01782  81 PRSD 84
rimM PRK13828
16S rRNA-processing protein RimM; Provisional
 20-172 7.80e-23

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184351 [Multi-domain]  Cd Length: 161  Bit Score: 88.85  E-value: 7.80e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612  20 IKGWLKVFSYTEQSESIFSYTPwmIKIKGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFTNAEVAVLADQLPALSDE 99
Cdd:PRK13828   1 VRGEVRLKSFTEDPLAIADYGP--LTTEDGARSFTVALARPAKDGLVARLKGVATREAAEALRGLELYVPRDRLPELDDD 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 992021612 100 EFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVLvvkaNLKDAFGQKERLIPFLDeQVIKLIDRTAQRIEVD 172
Cdd:PRK13828  79 EFYHADLIGLAAVDTGGALLGRVKAVHNFGAGDIL----EIAPPGGGPTLLLPFTR-AVVPTVDLAAGRVVAD 146
rimM PRK13829
16S rRNA-processing protein RimM; Provisional
 7-153 3.15e-19

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184352 [Multi-domain]  Cd Length: 162  Bit Score: 79.79  E-value: 3.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   7 DHIIVGKLGATYGIKGWLKVFSyteqsesifsyTPWMIKIKGEWKEIH----VESWKRHGQGLVAKLEGMDIREDAQVFT 82
Cdd:PRK13829   2 RRTEIGRFGGPYGVQGGLKFRG-----------EPVVLDLPRVYVEGLgwraIERAERVGPELVLHLAGVTSREGAEALV 70

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 992021612  83 NAEVAVLADQLPALSDEEFYWRELFGMSVVTtEGYDLGKVTDILETGSNDVLVVKANLKDAFGQKERLIPF 153
Cdd:PRK13829  71 GLRVYADDADLPPLEEGSYYYHELRGLPVYV-DGEPLGEVVDVEDAGAQDLLVIRHVGGSLRARATYFVPL 140
rimM PRK14592
16S rRNA-processing protein RimM; Provisional
 7-134 3.36e-15

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173056 [Multi-domain]  Cd Length: 165  Bit Score: 69.37  E-value: 3.36e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   7 DHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWmikIKGEwKEIHVESWKRHGQGLV-AKLEGMDIREDAQVFTNAE 85
Cdd:PRK14592   1 DLICLGVITSPHGIKGHVKIKTFTEDPENISAYGKL---TDGS-NTYKISVVSVIGANLViAKISGINSRTEAELLRNKK 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 992021612  86 VAVLADQLPALSDEEFYWRELFGMSVVTTEGYDLGKVTDILETGSNDVL 134
Cdd:PRK14592  77 LYVERSKLPNLNEDEFYQSDLIGMEVKLEDNTIYGYIKKIYNFGSCDII 125
rimM PRK14590
16S rRNA-processing protein RimM; Provisional
 9-158 1.79e-11

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173054 [Multi-domain]  Cd Length: 171  Bit Score: 59.48  E-value: 1.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   9 IIVGKLGATYGIKGWLKVFsyTEQSESIFSYTPWMIKI-----KGEWKEIHVESWKRHGQGLVAKLEGMDIREDAQVFTN 83
Cdd:PRK14590   1 ISLGQLGKPFGIKGWLRVN--VRGETLHTLKAPATLKLgkedpQFPESEIALLEIRPHGGKFLVRFEGYDTPEEAVKWRG 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 992021612  84 AEVAVLADQLPALSDE-EFYWRELFGMSVVTTEGYDLG-KVTDILETGSNDVLV-VKANlkdafgQKERLIPFLDEQV 158
Cdd:PRK14590  79 GSLFLPQELLPKIETKgEFYSEDLIGLQAIDETGKPLNwKLTDVQDNPAHPILVfIKGE------GEEILIPFLNVFV 150
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 98-172 2.75e-11

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 56.53  E-value: 2.75e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 992021612   98 DEEFYWRELFGMSVVTTEGYDLGKVTDI-LETGSNDVLVVKANLKDAFGQKERLIPFlDEQVIKLIDRtaqRIEVD 172
Cdd:pfam05239   1 EDEFYASDLIGLEVYTEDGEKLGKVKDVvIDEGEGRVRYLVVSVGGFLGGKEVLIPF-DKLNVKLGKD---RIIVD 72
rimM PRK14593
ribosome maturation factor RimM;
9-155 1.32e-04

ribosome maturation factor RimM;


Pssm-ID: 237760 [Multi-domain]  Cd Length: 184  Bit Score: 40.78  E-value: 1.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992021612   9 IIVGKLGATYGIKGWLKVFSYTEQSESI-----FSYTPW-MIKIKGEWKEIHVESWKrHGQGLVAkLEGMDIREDAQVFT 82
Cdd:PRK14593   5 LLVGRIGKSVGLNGGLKLHLESDFPECLkkgvkVSVAPLnAFSCASSFKDYVIHSYE-HAKNLLF-LETIHTPEKAKELT 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 992021612  83 NAEV---AVLADQLPALSDEEFYWRELFGMSVVtTEGYDLGKVTDILETGSNDVLVVKA--NLKDAFGQKERLIPFLD 155
Cdd:PRK14593  83 NLGLfmsEAESKKLCVLKEGEFFYCDLVGLSVV-EENEILGKVIEIQRISQTDYFMVETtlSLVEKGLAKIFLIPYRD 159
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 103-153 4.98e-04

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


Pssm-ID: 441477  Cd Length: 70  Bit Score: 37.11  E-value: 4.98e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 992021612 103 WRELFGMSVVTTEGYDLGKVTDI---LETGSNDVLVVKANLKDAF----GQKERLIPF 153
Cdd:COG1873    1 ASELIGKEVITSDGERLGKVKDVeidLETGKIEALVVPPGNKFFGflgdGEKEVVIPW 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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