|
Name |
Accession |
Description |
Interval |
E-value |
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
52-433 |
0e+00 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 560.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 52 LSAPDLEARIAEMVSDIVVSKQLPLGHKDVAHSVEQLLNEFLGLGPLQPLIEDQGITDIMVNGYREVYVERSGKLQKTAV 131
Cdd:COG4962 13 LDREELREEVRAAVAEALRAEGLVLSDAEREALARAVLDELFGLGPLEPLLDDPDVTDIMVNGPDEVFVERGGRLERTDV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 132 QFRNEEQLLNLARRIVSKVGRRIDESNPLVDARLDDGSRVNVMIPPLALDGTYISIRKFNENKLTLSQLAQFGAMSKSMV 211
Cdd:COG4962 93 RFDSEEELRRLIERIAARVGRRLDESSPIVDARLPDGSRVNAVIPPVARDGPSLSIRKFRKRPLTLEDLVALGSLTPEMA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 212 KLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANAEGLTPITQRELVRN 291
Cdd:COG4962 173 EFLRAAVRARLNILVSGGTGSGKTTLLNALSGFIPPDERIVTIEDAAELQLQHPHVVRLETRPPNVEGAGEVTLRDLVRN 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 292 ALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMSQATLPLFSLRRQIADTIDVVIQVE 371
Cdd:COG4962 253 ALRMRPDRIIVGEVRGAEALDMLQAMNTGHDGSMSTLHANSARDALARLETLALMAGENLPREAVRRQIASAIDLVVHLE 332
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 992044915 372 RMRDGKRRIVSITEVQGLEGEQYITQDLFKFKPLSEDQQGNLigeyksakcVPSFNEKAKYH 433
Cdd:COG4962 333 RLRDGRRRVTEIAEVTGMEGGRVVLQPIFRFDPGGLDAAGGV---------RPRFLERLEAA 385
|
|
| heli_sec_ATPase |
TIGR03819 |
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct ... |
49-383 |
8.87e-113 |
|
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Pssm-ID: 200328 Cd Length: 340 Bit Score: 335.07 E-value: 8.87e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 49 VVSLSAPDLEARIAEMVSDIVVSkqlPLGHKDVAHSVEQLLNEFLGLGPLQPLIEDQGITDIMVNGYREVYVERSGKLQK 128
Cdd:TIGR03819 9 LAAGSGPPTPAAVAAAVRAEAGR---VLGDAEVLAAARALRRDLVGAGPLEPLLADPGVTDVLVNGPDEVWVDRGRGLER 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 129 TAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVDARLDDGSRVNVMIPPLALDGTYISIRKFNENKLTLSQLAQFGAMSK 208
Cdd:TIGR03819 86 TDVRFPDEAAVRRLAQRLAAAAGRRLDDAQPWVDARLPDGTRLHAVLPPVATDGTCLSLRVPRRRTFTLDELVAAGTIPP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 209 SMVKLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANAEGLTPITQREL 288
Cdd:TIGR03819 166 GVARLLRALVAARLAFLVSGGTGSGKTTLLSALLALVPPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 289 VRNALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMsqATLPLFSLRRQIADTIDVVI 368
Cdd:TIGR03819 246 VRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTLHANSPADVPARLEALGAL--AGLDRAALHSQLAAALDVVL 323
|
330
....*....|....*
gi 992044915 369 QVERMRDGKRRIVSI 383
Cdd:TIGR03819 324 HVRRTPRGRRRVAEI 338
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
210-386 |
2.14e-86 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 261.71 E-value: 2.14e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 210 MVKLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANAEGlTPITQRELV 289
Cdd:cd01130 1 MAAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEK-GEVTMADLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 290 RNALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMSQATLPLFSLRRQIADTIDVVIQ 369
Cdd:cd01130 80 KAALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEAGVNLDEEALRRLIASAIDVIVH 159
|
170
....*....|....*..
gi 992044915 370 VERMRDGKRRIVSITEV 386
Cdd:cd01130 160 VKRLGDGVRRVTEIYEV 176
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
94-345 |
9.78e-65 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 209.06 E-value: 9.78e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 94 GLGPLQPLieDQGITDIMVNGYREVYV--ERSGKLQKtAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVDARL-----D 166
Cdd:pfam00437 1 NLIPLEAL--DEGASDIHVEPPERIVWirFRVDGVLR-EIPFPDADALARLISRIKVMARLDISERRPPQDGRLplrigG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 167 DGSRVNVMIPPLALdGTYISIR--KFNENKLTLSQLAQFGAMSKSMVKLIDiivRSRLNVLVAGGTGAGKTTLLNAMSFS 244
Cdd:pfam00437 78 KGVRVRVSTLPTAG-GEKLVIRllDPSNVALSLDELGMTGAQDEALLEFLR---QPRGNILVTGPTGSGKTTTLYAALGE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 245 I-SPQERIITIEDTAELRLQQPHVVRAETRpanaeglTPITQRELVRNALRMRPDRIILGEVRGDEAFEM-MQAMNTGHD 322
Cdd:pfam00437 154 LnTRDENIVTVEDPVEIQLEGINQVQLNAR-------AGVTFADLLRAILRQDPDRIMVGEIRDLETAEIaLQAANTGHL 226
|
250 260
....*....|....*....|...
gi 992044915 323 GsLCTLHANSATDALVRMENMLM 345
Cdd:pfam00437 227 V-LSTLHTNSAAGALTRLQDMGV 248
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
95-383 |
1.84e-54 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 184.58 E-value: 1.84e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 95 LGPLQPLIEDQGITDIMVNGYREVYVERSGKLQKTAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVDARLDDGSRVNVM 174
Cdd:PRK13900 12 LEPLKNIFAEDGVNEISINKPGEVWVEKKGDIRCEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPNGYRIQIV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 175 IPPLALDGTYI-SIRKFNENKLTLSQLAQFGAMS---------------------KSMVKLIDIIVRSRLNVLVAGGTGA 232
Cdd:PRK13900 92 FPPACEIGQIVySIRKPSGMQLTLDDYEKMGAFDetateslvdeddvilnellaeKKIKEFLEHAVISKKNIIISGGTST 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 233 GKTTLLNAMSFSISPQERIITIEDTAELRL-QQPHVVRAETRPANaEGLTPITQRELVRNALRMRPDRIILGEVRGDEAF 311
Cdd:PRK13900 172 GKTTFTNAALREIPAIERLITVEDAREIVLsNHPNRVHLLASKGG-QGRAKVTTQDLIEACLRLRPDRIIVGELRGAEAF 250
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 992044915 312 EMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMSQATLPLFSLRRQIADTIDVVIQVERMRDGKRRIVSI 383
Cdd:PRK13900 251 SFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVDIVVQLKRGSGGKRYVSEI 322
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
224-343 |
8.25e-12 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 65.16 E-value: 8.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 224 VLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAElrLQQPHVVRAET-RPANaegltpITQRELVRNALRMRPDRIIL 302
Cdd:NF041000 131 ILFSGPTGSGKTTTMYSLARKLALNKQVITIEDPVE--IKEPNFLQLQVnEKAG------MTYDTLLKAALRHRPDILII 202
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 992044915 303 GEVRGDEAFEM-MQAMNTGHDgSLCTLHANSATDALVRMENM 343
Cdd:NF041000 203 GEIRDAETAKAaIRAALTGHL-VLSTVHAKSAAGVIYRLLEL 243
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
223-374 |
4.73e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.52 E-value: 4.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 223 NVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANAEGLTPI-TQRELVRNALRMRPDRII 301
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGElRLRLALALARKLKPDVLI 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 992044915 302 LgevrgDEAFEMMQAMNTGHDGSLCTLHANsatDALVRMENMLMMSQATLPLFSLRRQIADTIDVVIQVERMR 374
Cdd:smart00382 84 L-----DEITSLLDAEQEALLLLLEELRLL---LLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
52-433 |
0e+00 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 560.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 52 LSAPDLEARIAEMVSDIVVSKQLPLGHKDVAHSVEQLLNEFLGLGPLQPLIEDQGITDIMVNGYREVYVERSGKLQKTAV 131
Cdd:COG4962 13 LDREELREEVRAAVAEALRAEGLVLSDAEREALARAVLDELFGLGPLEPLLDDPDVTDIMVNGPDEVFVERGGRLERTDV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 132 QFRNEEQLLNLARRIVSKVGRRIDESNPLVDARLDDGSRVNVMIPPLALDGTYISIRKFNENKLTLSQLAQFGAMSKSMV 211
Cdd:COG4962 93 RFDSEEELRRLIERIAARVGRRLDESSPIVDARLPDGSRVNAVIPPVARDGPSLSIRKFRKRPLTLEDLVALGSLTPEMA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 212 KLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANAEGLTPITQRELVRN 291
Cdd:COG4962 173 EFLRAAVRARLNILVSGGTGSGKTTLLNALSGFIPPDERIVTIEDAAELQLQHPHVVRLETRPPNVEGAGEVTLRDLVRN 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 292 ALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMSQATLPLFSLRRQIADTIDVVIQVE 371
Cdd:COG4962 253 ALRMRPDRIIVGEVRGAEALDMLQAMNTGHDGSMSTLHANSARDALARLETLALMAGENLPREAVRRQIASAIDLVVHLE 332
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 992044915 372 RMRDGKRRIVSITEVQGLEGEQYITQDLFKFKPLSEDQQGNLigeyksakcVPSFNEKAKYH 433
Cdd:COG4962 333 RLRDGRRRVTEIAEVTGMEGGRVVLQPIFRFDPGGLDAAGGV---------RPRFLERLEAA 385
|
|
| heli_sec_ATPase |
TIGR03819 |
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct ... |
49-383 |
8.87e-113 |
|
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Pssm-ID: 200328 Cd Length: 340 Bit Score: 335.07 E-value: 8.87e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 49 VVSLSAPDLEARIAEMVSDIVVSkqlPLGHKDVAHSVEQLLNEFLGLGPLQPLIEDQGITDIMVNGYREVYVERSGKLQK 128
Cdd:TIGR03819 9 LAAGSGPPTPAAVAAAVRAEAGR---VLGDAEVLAAARALRRDLVGAGPLEPLLADPGVTDVLVNGPDEVWVDRGRGLER 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 129 TAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVDARLDDGSRVNVMIPPLALDGTYISIRKFNENKLTLSQLAQFGAMSK 208
Cdd:TIGR03819 86 TDVRFPDEAAVRRLAQRLAAAAGRRLDDAQPWVDARLPDGTRLHAVLPPVATDGTCLSLRVPRRRTFTLDELVAAGTIPP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 209 SMVKLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANAEGLTPITQREL 288
Cdd:TIGR03819 166 GVARLLRALVAARLAFLVSGGTGSGKTTLLSALLALVPPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 289 VRNALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMsqATLPLFSLRRQIADTIDVVI 368
Cdd:TIGR03819 246 VRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTLHANSPADVPARLEALGAL--AGLDRAALHSQLAAALDVVL 323
|
330
....*....|....*
gi 992044915 369 QVERMRDGKRRIVSI 383
Cdd:TIGR03819 324 HVRRTPRGRRRVAEI 338
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
88-392 |
4.79e-89 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 278.50 E-value: 4.79e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 88 LLNEFLGLGPLQPLIEDQGITDIMVNGYRE-VYVE-RSGKLQKTAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVDARL 165
Cdd:COG0630 154 LLRDFVGYGKLDPLMRDPNIEDISCNGVGIpVYVYhRDYERIPTNIVFESEEELDNFVVKLAQRSGKHISVARPIVDATL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 166 DDGSRVNVMIPP-LALDGTYISIRKFNENKLTLSQLAQFGAMSKSMVKLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFS 244
Cdd:COG0630 234 PDGSRIALTLGPeVSRRGSSFTIRKFREVPLTPIDLIEWGTLSPELAAYLWLLLENGKSVLVAGGTASGKTTLLNALLSF 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 245 ISPQERIITIEDTAELRLQQPHVVRAETRPANAEGLTPITQRELVRNALRMRPDRIILGEVRGDEAFEMMQAMNTGHdGS 324
Cdd:COG0630 314 IPPDAKIVTIEDTRELNLPHENWISLVTRESFGGEEGDVTMFDLLKAALRQRPDYIVVGEVRGEEAYTLFQAMATGH-GV 392
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 992044915 325 LCTLHANSATDALVRMENMLMmsqatlplfSLRRQIADTIDVVIQVERMRDG---KRRIVSITEVQGLEGE 392
Cdd:COG0630 393 LSTFHADSVESAINRLTSPPI---------NVPRTLLQALDLVVFQKRVRVGgkrVRRVTSIVEIVGYDPE 454
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
210-386 |
2.14e-86 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 261.71 E-value: 2.14e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 210 MVKLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANAEGlTPITQRELV 289
Cdd:cd01130 1 MAAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEK-GEVTMADLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 290 RNALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMSQATLPLFSLRRQIADTIDVVIQ 369
Cdd:cd01130 80 KAALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEAGVNLDEEALRRLIASAIDVIVH 159
|
170
....*....|....*..
gi 992044915 370 VERMRDGKRRIVSITEV 386
Cdd:cd01130 160 VKRLGDGVRRVTEIYEV 176
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
102-383 |
1.37e-75 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 238.79 E-value: 1.37e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 102 IEDQGITDIMVNGYREVYVERSGKLQKTAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVDARLDDGSRVNVMIPPLALD 181
Cdd:TIGR02788 2 LDDEDVTEICINRPGEVWVEGPGGWQRFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLPGGERVQIVIPPACEN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 182 GTY-ISIRKFNENKLTLSQLAQFGAMS-------------KSMVKLID---------IIVRSRLNVLVAGGTGAGKTTLL 238
Cdd:TIGR02788 82 DTVsITIRKPSLVDFSLDDYEEKGFFDtvraqsgtlsdndEQLLELLDagdikeflrLAIASRKNIIISGGTGSGKTTFL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 239 NAMSFSISPQERIITIEDTAELRLQQPHVVRAeTRPANAEGLTPITQRELVRNALRMRPDRIILGEVRGDEAFEMMQAMN 318
Cdd:TIGR02788 162 KSLVDEIPKDERIITIEDTREIFLPHPNYVHL-FYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFIRAVN 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 992044915 319 TGHDGSLCTLHANSATDALVRMENMLMMSQAT--LPLFSLRRQIADTIDVVIQVERmRDGKRRIVSI 383
Cdd:TIGR02788 241 TGHPGSITTLHAGSPEEAFEQLALMVKSSQAGlgLDFAYIVKLVREVIDIVVQINR-RGGGRKITEV 306
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
94-345 |
9.78e-65 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 209.06 E-value: 9.78e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 94 GLGPLQPLieDQGITDIMVNGYREVYV--ERSGKLQKtAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVDARL-----D 166
Cdd:pfam00437 1 NLIPLEAL--DEGASDIHVEPPERIVWirFRVDGVLR-EIPFPDADALARLISRIKVMARLDISERRPPQDGRLplrigG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 167 DGSRVNVMIPPLALdGTYISIR--KFNENKLTLSQLAQFGAMSKSMVKLIDiivRSRLNVLVAGGTGAGKTTLLNAMSFS 244
Cdd:pfam00437 78 KGVRVRVSTLPTAG-GEKLVIRllDPSNVALSLDELGMTGAQDEALLEFLR---QPRGNILVTGPTGSGKTTTLYAALGE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 245 I-SPQERIITIEDTAELRLQQPHVVRAETRpanaeglTPITQRELVRNALRMRPDRIILGEVRGDEAFEM-MQAMNTGHD 322
Cdd:pfam00437 154 LnTRDENIVTVEDPVEIQLEGINQVQLNAR-------AGVTFADLLRAILRQDPDRIMVGEIRDLETAEIaLQAANTGHL 226
|
250 260
....*....|....*....|...
gi 992044915 323 GsLCTLHANSATDALVRMENMLM 345
Cdd:pfam00437 227 V-LSTLHTNSAAGALTRLQDMGV 248
|
|
| TrbB_P |
TIGR02782 |
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of ... |
95-396 |
2.36e-61 |
|
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation]
Pssm-ID: 274297 Cd Length: 299 Bit Score: 201.51 E-value: 2.36e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 95 LGP-LQPLIEDQGITDIMVNGYREVYVERSGKLQKTAVQFRnEEQLLNLARRIVSKVGRRIDESNPLVDARLD-DGSRVN 172
Cdd:TIGR02782 6 LGPeIAAALDDPGVVEIMLNPDGRLWVERLGSGMSPLGEMS-PADAQRIIGLVADYLGTEVDRDKPIVEGELPlDGSRFE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 173 VMIPPLaLDGTYISIRKFNENKLTLSQLAQFGAMSKSMVKLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSIS---PQE 249
Cdd:TIGR02782 85 GLIPPV-VAAPSFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAkndPTD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 250 RIITIEDTAELRLQQPHVVRAETRPanaeglTPITQRELVRNALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSLCTLH 329
Cdd:TIGR02782 164 RVVIIEDTRELQCAAPNVVQLRTSD------DAISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIH 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 992044915 330 ANSATDALVRMENMLMMSQATLPlfslRRQIADTIDVVIQVERmRDGKRRIVSITEVQGLEGEQYIT 396
Cdd:TIGR02782 238 ANNAKAALDRLEQLIQEVSVTPM----QTLIAEAVDLVIFIAR-TPAGRRVQEIAKVKGFDDGNYIT 299
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
95-383 |
1.84e-54 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 184.58 E-value: 1.84e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 95 LGPLQPLIEDQGITDIMVNGYREVYVERSGKLQKTAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVDARLDDGSRVNVM 174
Cdd:PRK13900 12 LEPLKNIFAEDGVNEISINKPGEVWVEKKGDIRCEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPNGYRIQIV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 175 IPPLALDGTYI-SIRKFNENKLTLSQLAQFGAMS---------------------KSMVKLIDIIVRSRLNVLVAGGTGA 232
Cdd:PRK13900 92 FPPACEIGQIVySIRKPSGMQLTLDDYEKMGAFDetateslvdeddvilnellaeKKIKEFLEHAVISKKNIIISGGTST 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 233 GKTTLLNAMSFSISPQERIITIEDTAELRL-QQPHVVRAETRPANaEGLTPITQRELVRNALRMRPDRIILGEVRGDEAF 311
Cdd:PRK13900 172 GKTTFTNAALREIPAIERLITVEDAREIVLsNHPNRVHLLASKGG-QGRAKVTTQDLIEACLRLRPDRIIVGELRGAEAF 250
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 992044915 312 EMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMSQATLPLFSLRRQIADTIDVVIQVERMRDGKRRIVSI 383
Cdd:PRK13900 251 SFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVDIVVQLKRGSGGKRYVSEI 322
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
95-399 |
4.99e-51 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 174.93 E-value: 4.99e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 95 LGP-LQPLIEDQGITDIMVNGYREVYVERSGKLQKTAVQFRNEEqllnlARRIVSKV----GRRIDESNPLVDARLD-DG 168
Cdd:PRK13894 22 MGPeLLAALNDPKTVEIMLNADGKLWQERLGEPMRCIGTLRVAQ-----AQAIIETIagyhGKEVTRSKPILEGELPlDG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 169 SRVNVMIPPLALDGTYiSIRKFNENKLTLSQLAQFGAMSKSMVKLIDIIVRSRLNVLVAGGTGAGKTTLLNAM---SFSI 245
Cdd:PRK13894 97 SRFAGQLPPVVPAPTF-AIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIineMVIQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 246 SPQERIITIEDTAELRLQQPHVVRAETRpanaeglTPITQRELVRNALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSL 325
Cdd:PRK13894 176 DPTERVFIIEDTGEIQCAAENYVQYHTS-------IDVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGA 248
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 992044915 326 CTLHANSATDALVRMENMLMM-SQATLPLFSLrrqIADTIDVVIQVERMrDGKRRIVSITEVQGLEGEQYITQDL 399
Cdd:PRK13894 249 ATLHANNAKAGLDRLKSLISMhPDAPKPIEPL---IGEAVHVVVHIART-PGGRRIQEILEVSGYANGQYITKTL 319
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
102-406 |
1.68e-34 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 131.07 E-value: 1.68e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 102 IEDQGITDIMVNGYREVYVER-------SGKLQKTAVqfrnEEQLLNLARRIVSKVGRRidesNPLVDARLD-DGSRVNV 173
Cdd:PRK13833 26 LDDATVVEIMLNPDGKLFIERlghgvapAGEMSAAAA----EVVIGSVAHALQSEADDE----RPIISGELPiGGHRFEG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 174 MIPPLALDGTYiSIRKFNENKLTLSQLAQFGAMSKSMVKLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSI---SPQER 250
Cdd:PRK13833 98 LLPPVVSGPAF-TIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIvasAPEDR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 251 IITIEDTAELRLQQPHVVRAETRPAnaegltpITQRELVRNALRMRPDRIILGEVRGDEAFEMMQAMNTGHDGSLCTLHA 330
Cdd:PRK13833 177 LVILEDTAEIQCAAENAVALHTSDT-------VDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHS 249
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 992044915 331 NSATDALVRMENMLM-MSQATLPlfslrRQIADTIDVVIQVERMRDGkRRIVSITEVQGLEGEQYITQDLFKFKPLS 406
Cdd:PRK13833 250 NTAMSALRRLEQLTAeASQQPMQ-----EVIGEAVDLIVSIERTGKG-RRVREVIHVEGFANGRYQTEHYAQIDEDS 320
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
95-368 |
2.01e-33 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 128.48 E-value: 2.01e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 95 LGPLQPLIEDQGITDIMVNGYREVYVERSGKLQKTAVQFrNEEQLLNLArrIVSKVGRRID--ESNPLVDARLDDGSRVN 172
Cdd:PRK13851 11 LKPVLEWLDDPRTEEVAINRPGEAFVRQAGVFTKFPLPL-SYDDLEDIA--ILAGALRKQDvgPRNPLCATELPGGERLQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 173 VMIPPLALDGTY-ISIRK----------------------FNENKLTLSQLAQFGAM---SKSMVKLIDIIVRSRLNVLV 226
Cdd:PRK13851 88 ICLPPTVPSGTVsLTIRRpssrvselkevssrydasrwnqWQERRKRRDQLDEAILRhydNGDLEAFLHACVVGRLTMLL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 227 AGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAeTRPANAEGLTPITQRELVRNALRMRPDRIILGEVR 306
Cdd:PRK13851 168 CGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRL-LYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEMR 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 992044915 307 GDEAFEMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMSQ--ATLPLFSLRRQIADTIDVVI 368
Cdd:PRK13851 247 DDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAqgASLEDRTLIDMLATAIDVIV 310
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
223-374 |
7.73e-25 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 100.16 E-value: 7.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 223 NVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANaegltpITQRELVRNALRMRPDRIIL 302
Cdd:cd19477 12 NVIVCGGTGSGKTTYIKSILEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGN------ITSADCLKSCLRQRPDRIIL 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 992044915 303 GEVRGDEAFEMMQAMNTGHDGSLCTLHANSATDALVRMENMLMMSQA--TLPLFSLRRQIADTIDVVIQVERMR 374
Cdd:cd19477 86 GELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN*SSSNSAarNIKFESLIEGFKDLIDGIVHINHHK 159
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
104-386 |
2.15e-18 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 85.91 E-value: 2.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 104 DQGITDIMVNGYREVYVERSGKLQKTAVQFRNEEQLLNLARRIVSKVGRRIDESNPLVD--------ARLddgsRVNVMi 175
Cdd:COG2805 14 EQGASDLHLTVGSPPMLRIDGELVPLDDPPLTPEDLEALLKEILTEEQRERLEEEGELDfsyslpglGRF----RVNIF- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 176 ppLALDGTYISIRKFNENKLTLSQLAqfgaMSKSMVKLIDIivRSRLnVLVAGGTGAGKTTLLNAMsfsI-----SPQER 250
Cdd:COG2805 89 --RQRGGVAAVLRLIPSEIPTLEELG----LPPVLKELAEL--PRGL-VLVTGPTGSGKSTTLAAM---IdyineTRAKH 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 251 IITIEDTAELRLQQPHVVraetrpanaegltpITQREL----------VRNALRMRPDRIILGEVRGDEAFEM-MQAMNT 319
Cdd:COG2805 157 IITIEDPIEFVHKHKKSL--------------INQREVgrdtpsfanaLRAALREDPDVILVGEMRDLETIEAaLTAAET 222
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 992044915 320 GHdgsLC--TLHANSATDALVRMENMLMMSQATlplfSLRRQIADTIDVVI--QVERMRDGKRRIVsITEV 386
Cdd:COG2805 223 GH---LVfaTLHTNSAAQTIDRIIDVFPPEEQA----QIRSQLAESLRGVIsqRLLPRADGGGRVA-AREI 285
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
212-380 |
4.67e-17 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 79.89 E-value: 4.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 212 KLIDIIVRSRLNVLVAGGTGAGKTTLLNAMSFSISpQER---IITIEDTAELRLQqphvvraetrpanaEGLTPITQREL 288
Cdd:cd01131 12 VLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYIN-ETRskhIITIEDPIEFVHK--------------HKKSLINQREV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 289 ----------VRNALRMRPDRIILGEVRGDEAFEM-MQAMNTGHdgsLC--TLHANSATDALVRMENMLMMSQATLplfs 355
Cdd:cd01131 77 grdtesfaaaLRAALREDPDVILVGEMRDLETIELaLTAAETGH---LVfsTLHTNSAAQTIDRIIDVFPPEQQEQ---- 149
|
170 180
....*....|....*....|....*..
gi 992044915 356 LRRQIADTIDVVI--QVERMRDGKRRI 380
Cdd:cd01131 150 VRIQLASSLRGVIsqRLLPKKDGGGRV 176
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
212-343 |
5.91e-17 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 77.91 E-value: 5.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 212 KLIDIIVRSRLNVLVAGGTGAGKTTLL-NAMSFSISPQERIITIEDTAELRLqqPHVVRAETRPANAegltpITQRELVR 290
Cdd:cd01129 2 RLRRLIKRPHGLILVTGPTGSGKTTTLyAMLRELNGPERNIITIEDPVEYQI--PGINQSQVNEKIG-----LTFADALR 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 992044915 291 NALRMRPDRIILGEVRGDEAFEM-MQAMNTGHdgsLC--TLHANSATDALVRMENM 343
Cdd:cd01129 75 AILRQDPDIIMVGEIRDAETAEIaIRAALTGH---LVlsTLHTNDALGAITRLLDM 127
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
224-378 |
4.43e-16 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 75.88 E-value: 4.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 224 VLVAGGTGAGKTTLLNAMSFSI----SPQERIITIEDTAELRLQQPHvvraetrpanaEGLTPITQREL----------V 289
Cdd:cd19516 14 VYVAGATGSGKSTLLAAIYRYIlendPPDRKIITYEDPIEFVYDGIK-----------SKHSIIVQSQIprhfksfakaV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 290 RNALRMRPDRIILGEVRGDEAFE-MMQAMNTGHDgSLCTLHANSATDALVRMenmlmmsqatLPLFSLRRQIADTIDVV- 367
Cdd:cd19516 83 REALRRKPSLIGVGELRDQETISaAVEASLTGHP-VYSTVHTKSVAETIRRL----------ISLFPPEERDAAAYDLLs 151
|
170
....*....|....*...
gi 992044915 368 ----IQVERM---RDGKR 378
Cdd:cd19516 152 tlrfIIVQRLvrtTDGKR 169
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
224-343 |
8.25e-12 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 65.16 E-value: 8.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 224 VLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAElrLQQPHVVRAET-RPANaegltpITQRELVRNALRMRPDRIIL 302
Cdd:NF041000 131 ILFSGPTGSGKTTTMYSLARKLALNKQVITIEDPVE--IKEPNFLQLQVnEKAG------MTYDTLLKAALRHRPDILII 202
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 992044915 303 GEVRGDEAFEM-MQAMNTGHDgSLCTLHANSATDALVRMENM 343
Cdd:NF041000 203 GEIRDAETAKAaIRAALTGHL-VLSTVHAKSAAGVIYRLLEL 243
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
224-343 |
8.93e-12 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 67.14 E-value: 8.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 224 VLVAGGTGAGKTTLLNAM-SFSISPQERIITIEDTAELRLqqPHVVRAETRPAN----AEGLtpitqrelvRNALRMRPD 298
Cdd:COG2804 316 ILVTGPTGSGKTTTLYAAlNELNTPERNIITVEDPVEYQL--PGINQVQVNPKIgltfASAL---------RSILRQDPD 384
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 992044915 299 RIILGEVRGDEAFEM-MQAMNTGHdGSLCTLHANSATDALVRMENM 343
Cdd:COG2804 385 VIMVGEIRDLETAEIaVQAALTGH-LVLSTLHTNDAPSAITRLLDM 429
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| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
223-374 |
4.73e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.52 E-value: 4.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992044915 223 NVLVAGGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPHVVRAETRPANAEGLTPI-TQRELVRNALRMRPDRII 301
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGElRLRLALALARKLKPDVLI 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 992044915 302 LgevrgDEAFEMMQAMNTGHDGSLCTLHANsatDALVRMENMLMMSQATLPLFSLRRQIADTIDVVIQVERMR 374
Cdd:smart00382 84 L-----DEITSLLDAEQEALLLLLEELRLL---LLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
228-266 |
6.47e-03 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 37.24 E-value: 6.47e-03
10 20 30
....*....|....*....|....*....|....*....
gi 992044915 228 GGTGAGKTTLLNAMSFSISPQERIITIEDTAELRLQQPH 266
Cdd:pfam00005 18 GPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKS 56
|
|
| Zeta_toxin |
pfam06414 |
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ... |
224-293 |
8.68e-03 |
|
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Pssm-ID: 428926 Cd Length: 192 Bit Score: 37.34 E-value: 8.68e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 992044915 224 VLVAGGTGAGKTTLLNAMSFSISPQERIITIeDTAELRLQQPHVVRAE-TRPANAEGLTPITQRELVRNAL 293
Cdd:pfam06414 14 ILLGGQPGAGKTELARALLDELGRQGNVVRI-DPDDFRELHPHYRELQaADPKTASEYTQPDASRWVEKLL 83
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