|
Name |
Accession |
Description |
Interval |
E-value |
| RfaF |
COG0859 |
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis]; |
6-346 |
8.46e-98 |
|
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440620 Cd Length: 336 Bit Score: 293.42 E-value: 8.46e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 6 APPKSVCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNV-ELIVFDKK--AGWSGIKAVWQQLKG 82
Cdd:COG0859 2 QPPMRILIIRLSALGDVLLATPALRALKRAYPDAEIDLLVEPRFAPLLELNPYVdEVIPFDKKrrKGLAELLKLLRQLRA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 83 RHFDALVHMQLALRASLVTLGIRAQYKVGFnrkrAKEGQWLFTNRKIADTESAHVLDSFFSFTEFLGVPRQTPTWNLPIS 162
Cdd:COG0859 82 ERYDLVIDLQGSLRSALLARLAGAPRRIGF----DKELRSLLLNHRVPLPPDQHEVERYLALLAALGIPLPDPRPDLPLP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 163 EQDRQFARAQL-----GNQPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAprEQKLAEQISALMTHPVL 237
Cdd:COG0859 158 EEDRAEARALLarlglPGKPYIVLHPGASWPAKRWPAERFAELARALAARGLRVVLLGGPG--ERELAEEIAAALGPPVI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 238 NLVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPYFNIKDVVSVYEPFVTEQQGKplella 317
Cdd:COG0859 236 NLAGKTSLRELAALLARADLVVGNDTGPMHLAAALGTPTVALFGPTDPARWGPYGDRHRVLRADLPCSPCGKRE------ 309
|
330 340
....*....|....*....|....*....
gi 992343249 318 wsTRAKGTDLMQAISLDAVITTFDRMMSA 346
Cdd:COG0859 310 --CPLGHHPCMADISPEEVLEALEELLAR 336
|
|
| GT9_LPS_heptosyltransferase |
cd03789 |
lipopolysaccharide heptosyltransferase and similar proteins; Lipopolysaccharide ... |
10-342 |
9.26e-72 |
|
lipopolysaccharide heptosyltransferase and similar proteins; Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Pssm-ID: 340821 Cd Length: 277 Bit Score: 224.53 E-value: 9.26e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 10 SVCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNVELIVFDKKAGWSGIK---AVWQQLKGRHFD 86
Cdd:cd03789 1 KILVIRLSALGDVVLTTPLLRALKKAYPDAKITVVVGPGYAELLELNPYIDEVIPDDKRRRAGLRgrrKLLRELRARKYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 87 ALVHMQLALRASLVTLGIRAQYKVGFNRKRAKEGQWLFTnrkiadtesahvldsffsfteflgvprqtptwnlpiseqdr 166
Cdd:cd03789 81 LVIDLHSSLRSALLLLLSGAPRRIGFDREKRRFLLNHPV----------------------------------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 167 qfaraqlgnQPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAprEQKLAEQISALMTHPVLNLVGKTNLK 246
Cdd:cd03789 120 ---------KPLVVIPPGASGPAKRWPAERFAELADRLADEGYRVVLFGGPA--EEELAEEIAAALGARVVNLAGKTSLR 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 247 QLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPYFNIKDVVSVYEPFVTEQQGKPlellawsTRAKGTD 326
Cdd:cd03789 189 ELAALLARADLVVGNDSGPMHLAAALGTPTVALFGPTDPARTGPYGSNHVVVRADLPCSPCCPKRE-------CPRGDHK 261
|
330
....*....|....*.
gi 992343249 327 LMQAISLDAVITTFDR 342
Cdd:cd03789 262 CMRDITPEEVIEAIRR 277
|
|
| Glyco_transf_9 |
pfam01075 |
Glycosyltransferase family 9 (heptosyltransferase); Members of this family belong to ... |
73-303 |
4.53e-58 |
|
Glycosyltransferase family 9 (heptosyltransferase); Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
Pssm-ID: 395853 Cd Length: 247 Bit Score: 188.31 E-value: 4.53e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 73 IKAVWQQLKGRHFDALVHMQLALRASLVTLGIRAQYKVGFNRKRAKeGQWLFTNRKIADTESAHVLDSFFS-FTEFLGVP 151
Cdd:pfam01075 1 RRRLGKALRANAYDRVIDLQGLLKSALLVRFLKAPPRIGFDGESRR-LGSLFYSRKHDKPKGPHAVERNRAlFAQALGLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 152 RQTPTWNLPISEQDRQFARAQLG-NQPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAPREQKLAEQISA 230
Cdd:pfam01075 80 KPESKPELGLSLPFRAAALDAAGaGRPYIVFCPGASFDAKRWPEEHYAELAEALQERGYQVVLFGGPEAHEEEIAERIAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 992343249 231 LMTHPVLNLVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPYFNIKDVVSVYEP 303
Cdd:pfam01075 160 GLEETCVNLLGKTSLEEAAALLAGADLVVGNDSGLMHLAAALDRPVIGLYGPTDPGRTPPYSDNATIVSLHEG 232
|
|
| heptsyl_trn_I |
TIGR02193 |
lipopolysaccharide heptosyltransferase I; This family consists of examples of ADP-heptose:LPS ... |
11-291 |
3.46e-33 |
|
lipopolysaccharide heptosyltransferase I; This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Pssm-ID: 274025 Cd Length: 319 Bit Score: 125.53 E-value: 3.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 11 VCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNV-ELIVFD----KKAGWSG-----IKAVWQQL 80
Cdd:TIGR02193 2 ILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVdEVIPVAlrrwRKTLFSAatwreIKALRALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 81 KGRHFDALVHMQLALRASLVTLGIRAQyKVGFNRKRAKEG-QWLFTNRKIADTESAHVLD-SFFSFTEFLGVPrqtptwn 158
Cdd:TIGR02193 82 RAERYDAVIDAQGLIKSALVARMARGP-RHGFDWRSAREPlASLFYNKRVGISYQQHAVErNRKLFALALGYP------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 159 LPISEQ-----DRQFARAQLGN---QPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSpAPREQKLAEQISA 230
Cdd:TIGR02193 154 PPIAETidyglARRAAVAFLGHalpAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWG-NDAEKQRAERIAE 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 992343249 231 LMTHPVLnlVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPY 291
Cdd:TIGR02193 233 ALPGAVV--LPKMSLAEVAALLAGADAVVGVDTGLTHLAAALDKPTVTLYGATDPGRTGGY 291
|
|
| PRK10422 |
PRK10422 |
lipopolysaccharide core biosynthesis protein; Provisional |
7-291 |
2.48e-24 |
|
lipopolysaccharide core biosynthesis protein; Provisional
Pssm-ID: 182447 Cd Length: 352 Bit Score: 101.78 E-value: 2.48e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 7 PPKSVCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNVELI--VFDKKAGWS-GIK---AVWQQL 80
Cdd:PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALygIKNKKAGASeKIKnffSLIKVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 81 KGRHFDALVHMQLALRASLVTLGIRAQYKVGFNRKRAKEGQW--LFTNrkIADTESAHVLDSFFSFTEFLGVPRQTPTWN 158
Cdd:PRK10422 84 RANKYDLIVNLTDQWMVALLVRLLNARVKISQDYHHRQSAFWrkSFTH--LVPLQGGHIVESNLSVLTPLGLSSLVKETT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 159 LPISEQDRQFARAQLGN----QPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAPREQKLAEQISAL-MT 233
Cdd:PRK10422 162 MSYRPESWKRMRRQLDHlgvtQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGcQT 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 992343249 234 HPVLNLVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPY 291
Cdd:PRK10422 242 PPVTALAGKTTFPELGALIDHAQLFIGVDSAPAHIAAAVNTPLICLFGATDHIFWRPW 299
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RfaF |
COG0859 |
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis]; |
6-346 |
8.46e-98 |
|
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440620 Cd Length: 336 Bit Score: 293.42 E-value: 8.46e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 6 APPKSVCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNV-ELIVFDKK--AGWSGIKAVWQQLKG 82
Cdd:COG0859 2 QPPMRILIIRLSALGDVLLATPALRALKRAYPDAEIDLLVEPRFAPLLELNPYVdEVIPFDKKrrKGLAELLKLLRQLRA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 83 RHFDALVHMQLALRASLVTLGIRAQYKVGFnrkrAKEGQWLFTNRKIADTESAHVLDSFFSFTEFLGVPRQTPTWNLPIS 162
Cdd:COG0859 82 ERYDLVIDLQGSLRSALLARLAGAPRRIGF----DKELRSLLLNHRVPLPPDQHEVERYLALLAALGIPLPDPRPDLPLP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 163 EQDRQFARAQL-----GNQPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAprEQKLAEQISALMTHPVL 237
Cdd:COG0859 158 EEDRAEARALLarlglPGKPYIVLHPGASWPAKRWPAERFAELARALAARGLRVVLLGGPG--ERELAEEIAAALGPPVI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 238 NLVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPYFNIKDVVSVYEPFVTEQQGKplella 317
Cdd:COG0859 236 NLAGKTSLRELAALLARADLVVGNDTGPMHLAAALGTPTVALFGPTDPARWGPYGDRHRVLRADLPCSPCGKRE------ 309
|
330 340
....*....|....*....|....*....
gi 992343249 318 wsTRAKGTDLMQAISLDAVITTFDRMMSA 346
Cdd:COG0859 310 --CPLGHHPCMADISPEEVLEALEELLAR 336
|
|
| GT9_LPS_heptosyltransferase |
cd03789 |
lipopolysaccharide heptosyltransferase and similar proteins; Lipopolysaccharide ... |
10-342 |
9.26e-72 |
|
lipopolysaccharide heptosyltransferase and similar proteins; Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Pssm-ID: 340821 Cd Length: 277 Bit Score: 224.53 E-value: 9.26e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 10 SVCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNVELIVFDKKAGWSGIK---AVWQQLKGRHFD 86
Cdd:cd03789 1 KILVIRLSALGDVVLTTPLLRALKKAYPDAKITVVVGPGYAELLELNPYIDEVIPDDKRRRAGLRgrrKLLRELRARKYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 87 ALVHMQLALRASLVTLGIRAQYKVGFNRKRAKEGQWLFTnrkiadtesahvldsffsfteflgvprqtptwnlpiseqdr 166
Cdd:cd03789 81 LVIDLHSSLRSALLLLLSGAPRRIGFDREKRRFLLNHPV----------------------------------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 167 qfaraqlgnQPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAprEQKLAEQISALMTHPVLNLVGKTNLK 246
Cdd:cd03789 120 ---------KPLVVIPPGASGPAKRWPAERFAELADRLADEGYRVVLFGGPA--EEELAEEIAAALGARVVNLAGKTSLR 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 247 QLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPYFNIKDVVSVYEPFVTEQQGKPlellawsTRAKGTD 326
Cdd:cd03789 189 ELAALLARADLVVGNDSGPMHLAAALGTPTVALFGPTDPARTGPYGSNHVVVRADLPCSPCCPKRE-------CPRGDHK 261
|
330
....*....|....*.
gi 992343249 327 LMQAISLDAVITTFDR 342
Cdd:cd03789 262 CMRDITPEEVIEAIRR 277
|
|
| Glyco_transf_9 |
pfam01075 |
Glycosyltransferase family 9 (heptosyltransferase); Members of this family belong to ... |
73-303 |
4.53e-58 |
|
Glycosyltransferase family 9 (heptosyltransferase); Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
Pssm-ID: 395853 Cd Length: 247 Bit Score: 188.31 E-value: 4.53e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 73 IKAVWQQLKGRHFDALVHMQLALRASLVTLGIRAQYKVGFNRKRAKeGQWLFTNRKIADTESAHVLDSFFS-FTEFLGVP 151
Cdd:pfam01075 1 RRRLGKALRANAYDRVIDLQGLLKSALLVRFLKAPPRIGFDGESRR-LGSLFYSRKHDKPKGPHAVERNRAlFAQALGLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 152 RQTPTWNLPISEQDRQFARAQLG-NQPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAPREQKLAEQISA 230
Cdd:pfam01075 80 KPESKPELGLSLPFRAAALDAAGaGRPYIVFCPGASFDAKRWPEEHYAELAEALQERGYQVVLFGGPEAHEEEIAERIAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 992343249 231 LMTHPVLNLVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPYFNIKDVVSVYEP 303
Cdd:pfam01075 160 GLEETCVNLLGKTSLEEAAALLAGADLVVGNDSGLMHLAAALDRPVIGLYGPTDPGRTPPYSDNATIVSLHEG 232
|
|
| heptsyl_trn_I |
TIGR02193 |
lipopolysaccharide heptosyltransferase I; This family consists of examples of ADP-heptose:LPS ... |
11-291 |
3.46e-33 |
|
lipopolysaccharide heptosyltransferase I; This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Pssm-ID: 274025 Cd Length: 319 Bit Score: 125.53 E-value: 3.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 11 VCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNV-ELIVFD----KKAGWSG-----IKAVWQQL 80
Cdd:TIGR02193 2 ILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVdEVIPVAlrrwRKTLFSAatwreIKALRALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 81 KGRHFDALVHMQLALRASLVTLGIRAQyKVGFNRKRAKEG-QWLFTNRKIADTESAHVLD-SFFSFTEFLGVPrqtptwn 158
Cdd:TIGR02193 82 RAERYDAVIDAQGLIKSALVARMARGP-RHGFDWRSAREPlASLFYNKRVGISYQQHAVErNRKLFALALGYP------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 159 LPISEQ-----DRQFARAQLGN---QPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSpAPREQKLAEQISA 230
Cdd:TIGR02193 154 PPIAETidyglARRAAVAFLGHalpAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWG-NDAEKQRAERIAE 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 992343249 231 LMTHPVLnlVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPY 291
Cdd:TIGR02193 233 ALPGAVV--LPKMSLAEVAALLAGADAVVGVDTGLTHLAAALDKPTVTLYGATDPGRTGGY 291
|
|
| heptsyl_trn_III |
TIGR02201 |
lipopolysaccharide heptosyltransferase III, putative; This family consists of examples of the ... |
20-345 |
8.49e-26 |
|
lipopolysaccharide heptosyltransferase III, putative; This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Pssm-ID: 131256 Cd Length: 344 Bit Score: 105.76 E-value: 8.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 20 GDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNVELIV-FD---KKAGWSGIKAVWQ---QLKGRHFDALVHMQ 92
Cdd:TIGR02201 11 GDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYgLDrkkAKAGERKLANQFHlikVLRANRYDLVVNLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 93 LALRASLVTLGIRAQYKVGFNRKRAKEGQWLFTNRKIADTE---SAHVLDSFFSFTEFLGVPRQTPTWNLPISEQDRQFA 169
Cdd:TIGR02201 91 DQWMVAILVKLLNARVKIGFDYPKRRSAFWRKSFTALAPLQggnTLHTVEQNLSVLTPLGLDSLVKQTRMSYPPADWKAM 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 170 RAQLGN----QPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAPREQKLAEQISA-LMTHPVLNLVGKTN 244
Cdd:TIGR02201 171 RALLDEagvgQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQgCQTPRVTSLAGKLT 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 245 LKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPYFNIKDVVSV--YEPFVTEQQgkplelLAWSTRA 322
Cdd:TIGR02201 251 LPQLAALIDHARLFIGVDSVPMHMAAALGTPLVALFGPSKHIFWRPWSNNMIQFWAgdYGELPDPDQ------RDTNTRE 324
|
330 340
....*....|....*....|...
gi 992343249 323 KGTDLmqaISLDAVITTFDRMMS 345
Cdd:TIGR02201 325 RYLSV---IPAAAVIAAVDKLLP 344
|
|
| PRK10422 |
PRK10422 |
lipopolysaccharide core biosynthesis protein; Provisional |
7-291 |
2.48e-24 |
|
lipopolysaccharide core biosynthesis protein; Provisional
Pssm-ID: 182447 Cd Length: 352 Bit Score: 101.78 E-value: 2.48e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 7 PPKSVCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNVELI--VFDKKAGWS-GIK---AVWQQL 80
Cdd:PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALygIKNKKAGASeKIKnffSLIKVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 81 KGRHFDALVHMQLALRASLVTLGIRAQYKVGFNRKRAKEGQW--LFTNrkIADTESAHVLDSFFSFTEFLGVPRQTPTWN 158
Cdd:PRK10422 84 RANKYDLIVNLTDQWMVALLVRLLNARVKISQDYHHRQSAFWrkSFTH--LVPLQGGHIVESNLSVLTPLGLSSLVKETT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 159 LPISEQDRQFARAQLGN----QPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALCGSPAPREQKLAEQISAL-MT 233
Cdd:PRK10422 162 MSYRPESWKRMRRQLDHlgvtQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGcQT 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 992343249 234 HPVLNLVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPY 291
Cdd:PRK10422 242 PPVTALAGKTTFPELGALIDHAQLFIGVDSAPAHIAAAVNTPLICLFGATDHIFWRPW 299
|
|
| heptsyl_trn_II |
TIGR02195 |
lipopolysaccharide heptosyltransferase II; This family consists of examples of ADP-heptose:LPS ... |
17-299 |
6.67e-22 |
|
lipopolysaccharide heptosyltransferase II; This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Pssm-ID: 274026 Cd Length: 334 Bit Score: 94.75 E-value: 6.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 17 SAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNV-ELIVFDKKAGWSGIKAVWQ---QLKGRHFDALVHMQ 92
Cdd:TIGR02195 8 SWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIrQAIDMPLGHGALELTERRRlgrSLREERYDQAIVLP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 93 LALRASLVTLGIRAQYKVGFNRkrakEGQWLFTN--RKIADTESAHVLDSFFS--FTEFLGVPRQTPTWNLPISEQDRQF 168
Cdd:TIGR02195 88 NSLKSALIPFFAGIPHRTGWRG----EMRYGLLNdvRALDKERLPLMVERYIAlaYDKGQDLPQPLPRPQLQVSPAEQAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 169 ARAQLG---NQPTIVISPAASKDE-RNWVTERYAQFADYVISQGYQVALCGSPAPREqkLAEQISALMTHPVLNLVGKTN 244
Cdd:TIGR02195 164 ALAKFGldtERPIIAFCPGAEFGPaKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHP--AGNEIEALLPGELRNLAGETS 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 992343249 245 LKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPYFNIKDVVS 299
Cdd:TIGR02195 242 LDEAVDLIALAKAVVTNDSGLMHVAAALNRPLVALYGSTSPDFTPPLSEKAEVIR 296
|
|
| PRK10964 |
PRK10964 |
lipopolysaccharide heptosyltransferase RfaC; |
11-291 |
8.23e-13 |
|
lipopolysaccharide heptosyltransferase RfaC;
Pssm-ID: 236809 Cd Length: 322 Bit Score: 68.47 E-value: 8.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 11 VCFLRLSAIGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAQLLQGLPNVE-----LIVFDKKAGWSG-IKAVWQ----QL 80
Cdd:PRK10964 3 VLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVDrvipvAIRRWRKAWFSApIRAERKafreAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 81 KGRHFDALVHMQ-LALRASLVT---LGIraqyKVGFNRKRAKEG-QWLFTNRKIADTESAHVLDSFFS-FTEFLGVPrqt 154
Cdd:PRK10964 83 QAEQYDAVIDAQgLVKSAALVTrlaHGV----KHGMDWQSAREPlASLFYNRRHHIAKQQHAVERTRElFAKSLGYS--- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 155 ptwnLPISEQD----RQFARAQLGN-QPTIVISPAASKDERNWVTERYAQFADYVISQGYQVALcgsP--APREQKLAEQ 227
Cdd:PRK10964 156 ----KPQTQGDyaiaQHFLTNLPADaGPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKL---PwgAEHEEQRAKR 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 992343249 228 ISALMTHpvLNLVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGPY 291
Cdd:PRK10964 229 LAEGFPY--VEVLPKLSLEQVARVLAGAKAVVSVDTGLSHLTAALDRPNITLYGPTDPGLIGGY 290
|
|
| PRK10916 |
PRK10916 |
ADP-heptose--LPS heptosyltransferase RfaF; |
159-290 |
1.59e-11 |
|
ADP-heptose--LPS heptosyltransferase RfaF;
Pssm-ID: 182835 Cd Length: 348 Bit Score: 64.69 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 159 LPISEQDRQFARAQLG---NQPTIVISPAAS-KDERNWVTERYAQFADYVISQGYQVALCGSPAPREQklAEQISALMTH 234
Cdd:PRK10916 160 LQVSEGEKSETCAAFSlssERPIIGFCPGAEfGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEA--GNEILAALNT 237
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 235 P----VLNLVGKTNLKQLAAVLGEAKLVLAPDSGPAHIATTQGTPVLGLYAHSNPKRTGP 290
Cdd:PRK10916 238 EqqawCRNLAGETQLEQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPP 297
|
|
| WcaK |
COG2327 |
Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) [Cell wall ... |
19-282 |
9.86e-11 |
|
Polysaccharide pyruvyl transferase family protein WcaK (colanic acid biosynthesis) [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441900 [Multi-domain] Cd Length: 357 Bit Score: 62.38 E-value: 9.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 19 IGDVCHAVAAVQNLQQHWPDTQVTWVIGKVEAqlLQGLPNVELIvfDKKAGWSGIKAVwqqlkgRHFDALVH-----MQ- 92
Cdd:COG2327 14 LGDEALLEALLQLLRKRLPDAEITVLSGNPEE--TRKRYGVRAV--PRRNFLEILRAL------RRADLVISgggglLQd 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 93 ------LALRASLVTLGIRAQYKV-----GFNRKRAKEGQWLFTN-----RKIA--DTESAHVLDSffsftefLGVPRQT 154
Cdd:COG2327 84 vtslrsLLYYLGLVLLAKLLGKPVviygqGIGPFKSPLSRRLLRRvlnraDLISvrDEASAELLKD-------LGVKKPP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 992343249 155 ------PTWNLPISEQDRQFARaqlgNQPTIVISPAASKDERNWVTERYAQFADYVISQ-GYQVALC--GSPAPREQKLA 225
Cdd:COG2327 157 ieltpdPAFLLPPEPVDKEAPL----ERPVVGVNLRPWRGLEEDYLEALAAALDRLIERtGYKVVLLphQYGQEDDLAIA 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 992343249 226 EQISALMTHPVLNLVGKTNLKQLAAVLGEAKLVLApdsGPAH---IATTQGTPVLGL-YAH 282
Cdd:COG2327 233 EELAAKLKERVVVLDEELDPDELLSLIARADLVIG---MRLHaliFALSAGVPVIALsYDP 290
|
|
| |
