|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
317-506 |
1.64e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 124.73 E-value: 1.64e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 317 EAKSYIGLGNLYSSLREYQKAIEFYQQSLAISREiedpsrEAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIfqEIDDirg 396
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL--DPDD--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 397 vAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREisditgEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKreigdrRG 476
Cdd:COG0457 76 -AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELD------PD 142
|
170 180 190
....*....|....*....|....*....|
gi 1002986205 477 EAKSWFNLGLTYYKLDRISEAKEAYLQARK 506
Cdd:COG0457 143 DADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
271-527 |
8.32e-31 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 120.11 E-value: 8.32e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 271 LNLELDLVASLDSLADIYYSRGEYQKAIKSCQQSLAIKGEmgdrvgEAKSYIGLGNLYSSLREYQKAIEFYQQSLAIsre 350
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 351 ieDPsREAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEiddirgVAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKre 430
Cdd:COG0457 72 --DP-DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELD-- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 431 isdiTGEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKREIGDRRGEAKSWFNLGLTYYKLDRISEAKEAYLQARKLFQA 510
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
250
....*....|....*..
gi 1002986205 511 LGLAGYVQKCDQAIRQL 527
Cdd:COG0457 217 AALAELLLLALALLLAL 233
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
224-503 |
9.00e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.16 E-value: 9.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 224 EPRLASLYASLAKIYNHrlsnlpLSDYRQeqqlAIEYYQKAINLQKelnlelDLVASLDSLADIYYSRGEYQKAIKSCQQ 303
Cdd:COG0457 4 DPDDAEAYNNLGLAYRR------LGRYEE----AIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 304 SLAIKGEMgdrvgeAKSYIGLGNLYSSLREYQKAIEFYQQSLAISREiedpsrEAKSYNNLGNVYYSLGEDQKAIEFYQQ 383
Cdd:COG0457 68 ALELDPDD------AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYER 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 384 SLAIFqeiddiRGVAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREISDitgeAYSYLGLGNVYYSLGEYQKAIEFYQQ 463
Cdd:COG0457 136 ALELD------PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL----AAALGEAALALAAAEVLLALLLALEQ 205
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1002986205 464 SLAIKREIGDRRGEAKSWFNLGLTYYKLDRISEAKEAYLQ 503
Cdd:COG0457 206 ALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
253-504 |
2.01e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 99.80 E-value: 2.01e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 253 EQQLAIEYYQKAIN-LQKELNLELDLVASLDSLADIYYSRGEYQKAIKSCQQSLAIKGEmgdrvgEAKSYIGLGNLYSSL 331
Cdd:COG2956 16 LNYLLNGQPDKAIDlLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 332 REYQKAIEFYQQSLAISREiedpsrEAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEiddirgVAYCYNNLGNIYNYL 411
Cdd:COG2956 90 GLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 412 GEYQKAIEFHQQSLAIKREisditgEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKREigdrrgEAKSWFNLGLTYYKL 491
Cdd:COG2956 158 GDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLPALPRLAELYEKL 225
|
250
....*....|...
gi 1002986205 492 DRISEAKEAYLQA 504
Cdd:COG2956 226 GDPEEALELLRKA 238
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
284-507 |
1.45e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.49 E-value: 1.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 284 LADIYYSRGEYQKAIKSCQQSLAIKGEmgdrvgEAKSYIGLGNLYSSLREYQKAIEFYQQSLAISREiedpsrEAKSYNN 363
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 364 LGNVYYSLGEDQKAIEFYQQSLAIfqEIDDIRgvayCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREisditgEAYSYLG 443
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLEL--DPDDAE----ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCE 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002986205 444 LGNVYYSLGEYQKAIEFYQQSLAIKREigdrrgEAKSWFNLGLTYYKLDRISEAKEAYLQARKL 507
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEAIAALERALEQ 207
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
225-428 |
6.38e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 96.60 E-value: 6.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 225 PRLASLYASLAKIYNHRLSNLPLSDYRQEQQLAIEYYQKAINLQKELNLELDLVASLDSLADIYYSRGEYQKAIKSCQQS 304
Cdd:COG3914 25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 305 LAIKGEmgdrvgEAKSYIGLGNLYSSLREYQKAIEFYQQSLAIsreieDPsREAKSYNNLGNVYYSLGEDQKAIEFYQQS 384
Cdd:COG3914 105 LALNPD------NAEALFNLGNLLLALGRLEEALAALRRALAL-----NP-DFAEAYLNLGEALRRLGRLEEAIAALRRA 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1002986205 385 LAIFqeiddiRGVAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIK 428
Cdd:COG3914 173 LELD------PDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
251-468 |
7.55e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 96.22 E-value: 7.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 251 RQEQQLAIEYYQKAINLQKELNLELDLVAS----LDSLADIYYSRGEYQKAIKSCQQSLAIKGEMGDRVGEAKSYIGLGN 326
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAAlaaaLGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 327 LYSSLREYQKAIEFYQQSLAIsreieDPSrEAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIddirgvAYCYNNLGN 406
Cdd:COG3914 87 LLQALGRYEEALALYRRALAL-----NPD-NAEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002986205 407 IYNYLGEYQKAIEFHQQSLAIKREisditgEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIK 468
Cdd:COG3914 155 ALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
284-507 |
6.43e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.13 E-value: 6.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 284 LADIYYSRGEYQKAIKSCQQSLAIKGEMGDRVGEAKSyigLGNLYSSLREYQKAIEFYQQSLAISREIEDPSREAKSYNN 363
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGL---ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 364 LGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIrgvaycYNNLGNIYNYLGEYQKAIEFHQQSLAIKreisdiTGEAYSYLG 443
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEA------LFNLGNLLLALGRLEEALAALRRALALN------PDFAEAYLN 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002986205 444 LGNVYYSLGEYQKAIEFYQQSLAIKREigdrrgEAKSWFNLGLTYYKLDRISEAKEAYLQARKL 507
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
251-466 |
1.26e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 92.36 E-value: 1.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 251 RQEQQLAIEYYQKAINLQKelnlelDLVASLDSLADIYYSRGEYQKAIKSCQQSLAIKGEMgdrvgeAKSYIGLGNLYSS 330
Cdd:COG3914 91 LGRYEEALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALRR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 331 LREYQKAIEFYQQSLAIsreieDPSReAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIRGvaycynNLGNIYNY 410
Cdd:COG3914 159 LGRLEEAIAALRRALEL-----DPDN-AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS------NLLFALRQ 226
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1002986205 411 LGEYQKAIEFHQQSLAIKREISDITGEAYSYLGLGNVYYSLGEYQKAIEFYQQSLA 466
Cdd:COG3914 227 ACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAA 282
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
318-504 |
4.06e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.57 E-value: 4.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 318 AKSYIGLGNLYSSLREYQKAIEFYQQSLAISREIEDPSREAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIddirgv 397
Cdd:COG4785 33 AVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL------ 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 398 AYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKreisdiTGEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKREIGDRrge 477
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALELD------PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER--- 177
|
170 180
....*....|....*....|....*..
gi 1002986205 478 aksWFNLGLTYYKLDRiSEAKEAYLQA 504
Cdd:COG4785 178 ---ALWLYLAERKLDP-EKALALLLED 200
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
334-478 |
1.16e-13 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 74.12 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 334 YQKAIEFYQQSLAISREIEDPSREAKSYNNLGNVYYSLGEDQKAIEFYQQSLAI-------FQEIDDIRGVAYCYNNLGN 406
Cdd:COG3899 721 YAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGL 800
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002986205 407 IynYLGEYQKAIEFHQQSLAIKREISDITGEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKREIGDRRGEA 478
Cdd:COG3899 801 L--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALAL 870
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
355-507 |
3.14e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.75 E-value: 3.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 355 SREAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIrgvaycYNNLGNIYNYLGEYQKAIEFHQQSLAIKREisdi 434
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA------FALLGEILLQLGDLDEAIVLLHEALELDPD---- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002986205 435 tgEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKREigdrrgEAKSWFNLGLTYYKLDRISEAKEAYLQARKL 507
Cdd:COG4783 71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
358-430 |
4.36e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 64.33 E-value: 4.36e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002986205 358 AKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEI--DDIRGVAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKRE 430
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
401-470 |
5.35e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 64.33 E-value: 5.35e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002986205 401 YNNLGNIYNYLGEYQKAIEFHQQSLAIKREISDIT--GEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKRE 470
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
316-468 |
6.88e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.98 E-value: 6.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 316 GEAKSYIGLGNLYSSLREYQKAIEFYQQSLAISREiedpsrEAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIr 395
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA- 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002986205 396 gvaycYNNLGNIYNYLGEYQKAIEFHQQSLAIKREisditgEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIK 468
Cdd:COG4783 75 -----RLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
324-509 |
9.12e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 67.63 E-value: 9.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 324 LGNLYSSLREYQKAIEFYQQSLAISREIEDPsreAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIRGVAYCYNN 403
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFA---AVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 404 LGNIYNYLGEYQKAIEFHQQSLAIKREISDItgeaysYLGLGNVYYSLGEYQKAIEFYQQSLAIKREIGDrrgeakSWFN 483
Cdd:COG4785 79 RGVAYDSLGDYDLAIADFDQALELDPDLAEA------YNNRGLAYLLLGDYDAALEDFDRALELDPDYAY------AYLN 146
|
170 180
....*....|....*....|....*.
gi 1002986205 484 LGLTYYKLDRISEAKEAYLQARKLFQ 509
Cdd:COG4785 147 RGIALYYLGRYELAIADLEKALELDP 172
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
244-486 |
1.26e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 67.25 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 244 NLPLSDYRQEQQLAIEYYQKAINLQKELNLELDLVASLDSLadiYYSRGEYQKAIKSCQQSLAIKGEMGDRVGEAKSYIG 323
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALA---DLALALAAAALAAAALAAERIDRALALPDLAQLYYE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 324 LGNLYSSLREYQKAIEFYQQSLAIsreieDPSReAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIrgvaycYNN 403
Cdd:COG4785 79 RGVAYDSLGDYDLAIADFDQALEL-----DPDL-AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA------YLN 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 404 LGNIYNYLGEYQKAIEfhqqslAIKREISDITGEAYSYLGLGNVYYSLGeYQKAIEFYQQSLAIKREIGDRRGEAKSWFN 483
Cdd:COG4785 147 RGIALYYLGRYELAIA------DLEKALELDPNDPERALWLYLAERKLD-PEKALALLLEDWATAYLLQGDTEEARELFK 219
|
...
gi 1002986205 484 LGL 486
Cdd:COG4785 220 LAL 222
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
318-390 |
3.01e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 62.02 E-value: 3.01e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002986205 318 AKSYIGLGNLYSSLREYQKAIEFYQQSLAISREIEDPSRE--AKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQE 390
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
267-398 |
2.15e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 2.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 267 LQKELNLELDLVASLDSLADIYYSRGEYQKAIKSCQQSLAIKGEmgdrvgEAKSYIGLGNLYSSLREYQKAIEFYQQSLA 346
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1002986205 347 IsreieDPsREAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIRGVA 398
Cdd:COG4235 80 L-----DP-DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
367-470 |
2.91e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.80 E-value: 2.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 367 VYYSLGEDQKAIEFYQQSLAIFQEIddirgvAYCYNNLGNIYNYLGEYQKAIEFhQQSLAIKREisditgEAYSYLGLGN 446
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDN------ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....
gi 1002986205 447 VYYSLGEYQKAIEFYQQSLAIKRE 470
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
251-390 |
5.92e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 5.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 251 RQEQQLAIEY-----YQKAINLQKE-LNLELDLVASLDSLADIYYSRGEYQKAIKSCQQSLAIKGEmgdrvgEAKSYIGL 324
Cdd:COG4783 5 EALYALAQALllagdYDEAEALLEKaLELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD------EPEARLNL 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002986205 325 GNLYSSLREYQKAIEFYQQslAISREIEDPSreakSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQE 390
Cdd:COG4783 79 GLALLKAGDYDEALALLEK--ALKLDPEHPE----AYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
376-507 |
6.86e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 6.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 376 KAIEFYQQSLAifQEIDDIRGvaycYNNLGNIYNYLGEYQKAIEFHQQSLAIKREISDItgeaysYLGLGNVYYSLGEYQ 455
Cdd:COG4235 1 EAIARLRQALA--ANPNDAEG----WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA------LLDLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1002986205 456 KAIEFYQQSLAIKREigdrrgEAKSWFNLGLTYYKLDRISEAKEAYLQARKL 507
Cdd:COG4235 69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
438-510 |
1.45e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 57.40 E-value: 1.45e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002986205 438 AYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKREI--GDRRGEAKSWFNLGLTYYKLDRISEAKEAYLQARKLFQA 510
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
336-467 |
2.30e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.48 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 336 KAIEFYQQSLAisreiEDPSrEAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIRGvaycynNLGNIYNYLGEYQ 415
Cdd:COG4235 1 EAIARLRQALA-----ANPN-DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALL------DLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1002986205 416 KAIEFHQQSLAIKREisdiTGEAYSYLGLgnVYYSLGEYQKAIEFYQQSLAI 467
Cdd:COG4235 69 EAEELLERALALDPD----NPEALYLLGL--AAFQQGDYAEAIAAWQKLLAL 114
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
290-433 |
2.45e-10 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 63.34 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 290 SRGEYQKAIKSCQQSLAIKGEMGDRVGEAKSYIGLGNLYSSLREYQKAIEFYQQSLAI-------SREIEDPSREAKSYN 362
Cdd:COG3899 717 ARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYA 796
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002986205 363 NLGNVYysLGEDQKAIEFYQQSLAIFQEIDDIRGVAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREISD 433
Cdd:COG3899 797 NLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGD 865
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
276-350 |
3.86e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 56.24 E-value: 3.86e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002986205 276 DLVASLDSLADIYYSRGEYQKAIKSCQQSLAI--KGEMGDRVGEAKSYIGLGNLYSSLREYQKAIEFYQQSLAISRE 350
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
368-507 |
4.98e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 4.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 368 YYSLGEDQKAIEFYQQSLAIFQEIDDIRGVAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREisditgEAYSYLGLGNV 447
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN------NPELYYNLALL 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 448 YYSLGEYQKAIEFYQQSLAIKreigdrRGEAKSWFNLGLTYYKLDRISEAKEAYLQARKL 507
Cdd:COG5010 98 YSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
266-427 |
5.03e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 5.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 266 NLQKELNLELDLVASLDSLADIYYSRGEYQKAIKSCQQSLAIKGEMGDRVGEAKSYIGLGNLYSSLREYQKAIEFYQQSL 345
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 346 AISREiedpsrEAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIrgvaycYNNLGNIYNYLGEYQKAIEFHQQSL 425
Cdd:COG5010 82 QLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA------YSNLAALLLSLGQDDEAKAALQRAL 149
|
..
gi 1002986205 426 AI 427
Cdd:COG5010 150 GT 151
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
225-387 |
5.17e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 5.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 225 PRLASLYASLAKIYNHRLSNLPLSDYRQEQQLAIEYYQKAINLQKELNLELDLVASLDSLADIYYSRGEYQKAIKSCQQS 304
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 305 LAIKGEmgdrvgEAKSYIGLGNLYSSLREYQKAIEFYQQSLAISREiedpsrEAKSYNNLGNVYYSLGEDQKAIEFYQQS 384
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
...
gi 1002986205 385 LAI 387
Cdd:COG5010 149 LGT 151
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
287-387 |
8.72e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 8.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 287 IYYSRGEYQKAIKSCQQSLAIKGEMGDrvgeakSYIGLGNLYSSLREYQKAIEFyQQSLAIsreieDPSReAKSYNNLGN 366
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL-EKALKL-----DPNN-AEALLNLAE 67
|
90 100
....*....|....*....|.
gi 1002986205 367 VYYSLGEDQKAIEFYQQSLAI 387
Cdd:COG3063 68 LLLELGDYDEALAYLERALEL 88
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
407-507 |
2.12e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.71 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 407 IYNYLGEYQKAIEFHQQSLAIKREisditgEAYSYLGLGNVYYSLGEYQKAIEFyQQSLAIKREigdrrgEAKSWFNLGL 486
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|.
gi 1002986205 487 TYYKLDRISEAKEAYLQARKL 507
Cdd:COG3063 68 LLLELGDYDEALAYLERALEL 88
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
333-413 |
1.69e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 51.21 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 333 EYQKAIEFYQQSLAISreiEDPSREAKSYNNLGNVYYSLGEDQKAIEFYQQSLaifqeiDDIRGVAYCYNNLGNIYNYLG 412
Cdd:PRK02603 50 EYAEALENYEEALKLE---EDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL------ELNPKQPSALNNIAVIYHKRG 120
|
.
gi 1002986205 413 E 413
Cdd:PRK02603 121 E 121
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
312-504 |
1.90e-07 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 52.58 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 312 GDRVGEAKS-YIGLGNLYSSLREYQKAIEFYQQSLAISREIEDPSREAKSYNNLGNVYYSLgEDQKAIEFYQQSLAIFQE 390
Cdd:cd15832 25 GSKYEEAAElYEKAANAFKLAKNWEEAGDAFLKAAECQLKLDSKHDAANAYVEAAKCYKKV-DPQEAVNCLEKAIEIYTE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 391 IDDIRGVAYCYNNLGNIY-NYLGEYQKAIEFHQQSLAIKREISDITGEAYSYLGLGNVYYSLGEYQKAIEFYQQslaikr 469
Cdd:cd15832 104 MGRFRQAAKHLKEIAELYeNELGDLDKAIEAYEQAADYYEGEGANSLANKCYLKVADLAAQLEDYDKAIEIYEQ------ 177
|
170 180 190
....*....|....*....|....*....|....*
gi 1002986205 470 eigdrrgEAKSWFNLGLTYYkldrisEAKEAYLQA 504
Cdd:cd15832 178 -------VARSSLENNLLKY------SAKDYFLKA 199
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
211-348 |
2.77e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 211 ELIEQIEvNKGKKEPRLASLYASLAKIYnhrlsnlplsdYRQEQ-QLAIEYYQKAINLQKElNLELdlvasLDSLADIYY 289
Cdd:COG4235 1 EAIARLR-QALAANPNDAEGWLLLGRAY-----------LRLGRyDEALAAYEKALRLDPD-NADA-----LLDLAEALL 62
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1002986205 290 SRGEYQKAIKSCQQSLAIKGEmgdrvgEAKSYIGLGNLYSSLREYQKAIEFYQQSLAIS 348
Cdd:COG4235 63 AAGDTEEAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
441-527 |
6.92e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 6.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 441 YLGLGNVYYSLGEYQKAIEFYQQSLAIKREigdrrgEAKSWFNLGLTYYKLDRISEAKEAYLQARKL----FQALGLAGY 516
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALALdpdnPEALYLLGL 93
|
90
....*....|....*
gi 1002986205 517 V----QKCDQAIRQL 527
Cdd:COG4235 94 AafqqGDYAEAIAAW 108
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
397-431 |
1.92e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 44.42 E-value: 1.92e-06
10 20 30
....*....|....*....|....*....|....*
gi 1002986205 397 VAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREI 431
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERV 35
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
440-474 |
3.58e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 43.68 E-value: 3.58e-06
10 20 30
....*....|....*....|....*....|....*
gi 1002986205 440 SYLGLGNVYYSLGEYQKAIEFYQQSLAIKREIGDR 474
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
251-353 |
4.40e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.16 E-value: 4.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 251 RQEQQLAIEYYQKAINLQKelnlelDLVASLDSLADIYYSRGEYQKAIKsCQQSLAIKGEmgdrvgEAKSYIGLGNLYSS 330
Cdd:COG3063 5 LGDLEEAEEYYEKALELDP------DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAELLLE 71
|
90 100
....*....|....*....|...
gi 1002986205 331 LREYQKAIEFYQQSLAISREIED 353
Cdd:COG3063 72 LGDYDEALAYLERALELDPSALR 94
|
|
| SNAP |
pfam14938 |
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ... |
295-488 |
5.34e-06 |
|
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.
Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 47.95 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 295 QKAIKSCQQSLAIKGEMGDRVGEAKS-YIGLGNLYSSLREYQKAIEFYQQSLAISREIEDPSREAKSYNNLGNVYYSlGE 373
Cdd:pfam14938 3 EKKLKSSSGFFSFFGSKSSKYEEAADlYIQAANAYKLAKNWEEAGEAFEKAAECQLKLGSKDEAANAYVEAAKCYKK-VD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 374 DQKAIEFYQQSLAIFQEIDDIRGVAYCYNNLGNIY-NYLGEYQKAIEFHQQ-----------SLA--IKREISDITGEay 439
Cdd:pfam14938 82 PEEAVRALEKAIEIYTEMGRFRRAAKHKKEIAELYeQELGDLEKAIEAYEQaadwyegegasALAnkCYLKVADLSAE-- 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1002986205 440 sylglgnvyysLGEYQKAIEFYQQslAIKREIGDR--RGEAKS-WFNLGLTY 488
Cdd:pfam14938 160 -----------LEDYPKAIEIYEK--VAKNSLENNllKYSVKEyFLKAGLCH 198
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
288-508 |
6.49e-06 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 49.15 E-value: 6.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 288 YYSRGEYQKAIKSCQQSLAIKGEMGDRVGE----AKSYigLGNLYSSLREYQKAIEFYQQSLAISREIEDPSREAKS--- 360
Cdd:NF040586 402 LYLRGDYESARDLAERALERWRERLGPDDRqtlrLRFH--LANALRSLGRYEEARELDEDTLERQRRVLGLGEDHPHtlm 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 361 -YNNLGNVYYSLGEDQKAIEFYQQSLAIFQEI---DDIRGVAyCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREISDITG 436
Cdd:NF040586 480 tAGGLGADLRALGRFREALELDEETLERHRRVfgeDHPRTLR-AANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDH 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 437 EA--YSYLGLGNVYYSLGEYQKAIEFYQQSLAIKREIgdRRGEAKSWF-----NLGLTYYKLDRISEA----KEAYLQAR 505
Cdd:NF040586 559 PRtlLSANNLARDLRELGRYAEALDLLEEALERYREV--LGGPDHPDTlraakSLAVALRRAGRLEEAlelaEDTYERYR 636
|
...
gi 1002986205 506 KLF 508
Cdd:NF040586 637 RRF 639
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
412-508 |
6.90e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.98 E-value: 6.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 412 GEYQKAIEFHQQSLAIKREiSDITGEAYSYLGlgNVYYSLGEYQKAIEFYQQslAIKREIGDRRGeAKSWFNLGLTYYKL 491
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPN-SPLAPDALYWLG--EAYYALGDYDEAAEAFEK--LLKRYPDSPKA-PDALLKLGLSYLEL 80
|
90
....*....|....*..
gi 1002986205 492 DRISEAKEAYLQARKLF 508
Cdd:COG1729 81 GDYDKARATLEELIKKY 97
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
320-355 |
8.66e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.53 E-value: 8.66e-06
10 20 30
....*....|....*....|....*....|....*.
gi 1002986205 320 SYIGLGNLYSSLREYQKAIEFYQQSLAISREIEDPS 355
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
400-433 |
9.09e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.53 E-value: 9.09e-06
10 20 30
....*....|....*....|....*....|....
gi 1002986205 400 CYNNLGNIYNYLGEYQKAIEFHQQSLAIKREISD 433
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
438-470 |
1.22e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.05 E-value: 1.22e-05
10 20 30
....*....|....*....|....*....|...
gi 1002986205 438 AYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKRE 470
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
438-470 |
1.26e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 42.02 E-value: 1.26e-05
10 20 30
....*....|....*....|....*....|...
gi 1002986205 438 AYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKRE 470
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
204-386 |
1.34e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 47.21 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 204 ISREDLLELIEQIEVNKGKkepRLASLYASLAKIYNhrlsNLPlSDYRQEQQLAIEYYQKAINLQKELNLELDLVASL-- 281
Cdd:COG3071 151 LSAEEAQALERRAYLGLLR---QAARDAEALKALWK----ALP-RAERRDPELAAAYARALIALGDHDEAERLLREALkr 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 282 ---DSLADIY--YSRGEYQKAIKSCQQSLAikgemgDRVGEAKSYIGLGNLYSSLREYQKAIEFYQQSLAIsreieDPSR 356
Cdd:COG3071 223 qwdPRLVRLYgrLQGGDPAKQLKRAEKWLK------KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL-----RPSA 291
|
170 180 190
....*....|....*....|....*....|
gi 1002986205 357 EAksYNNLGNVYYSLGEDQKAIEFYQQSLA 386
Cdd:COG3071 292 EA--YAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
385-507 |
1.56e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 385 LAIFQEIDDIRGVAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREISDITGEAYSYLGLGNVYYSLGEYQKAIEFYQQS 464
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1002986205 465 LAIKREigdrrgEAKSWFNLGLTYYKLDRISEAKEAYLQARKL 507
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
398-430 |
1.59e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 41.66 E-value: 1.59e-05
10 20 30
....*....|....*....|....*....|...
gi 1002986205 398 AYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKRE 430
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
288-383 |
1.67e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 288 YYSRGEYQKAIKSCQQSLAIKGEmGDRVGEAksYIGLGNLYSSLREYQKAIEFYQQslaISREIEDPSREAKSYNNLGNV 367
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPN-SPLAPDA--LYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLS 76
|
90
....*....|....*.
gi 1002986205 368 YYSLGEDQKAIEFYQQ 383
Cdd:COG1729 77 YLELGDYDKARATLEE 92
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
225-498 |
1.90e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 225 PRLASLYASLAKIYnhrlsnLPLSDYRQeqqlAIEYYQKAINLQKelnlelDLVASLDSLADIYYSRGEYQKAIKSCQQS 304
Cdd:TIGR02917 598 PDSPEAWLMLGRAQ------LAAGDLNK----AVSSFKKLLALQP------DSALALLLLADAYAVMKNYAKAITSLKRA 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 305 LAIKGEM-------------GDRVGEAKSYIG---------------LGNLYSSLREYQKAIEFYQQSLAIS-------- 348
Cdd:TIGR02917 662 LELKPDNteaqiglaqlllaAKRTESAKKIAKslqkqhpkaalgfelEGDLYLRQKDYPAAIQAYRKALKRApssqnaik 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 349 -----REIEDPSREAKSYN--------------NLGNVYYSLGEDQKAIEFYQQSLAIFQeiDDirgvAYCYNNLGNIYN 409
Cdd:TIGR02917 742 lhralLASGNTAEAVKTLEawlkthpndavlrtALAELYLAQKDYDKAIKHYQTVVKKAP--DN----AVVLNNLAWLYL 815
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 410 YLGEyQKAIEFHQQSLAIKREISDITGEaysylgLGNVYYSLGEYQKAIEFYQQSLAIKREIGDRRgeakswFNLGLTYY 489
Cdd:TIGR02917 816 ELKD-PRALEYAERALKLAPNIPAILDT------LGWLLVEKGEADRALPLLRKAVNIAPEAAAIR------YHLALALL 882
|
....*....
gi 1002986205 490 KLDRISEAK 498
Cdd:TIGR02917 883 ATGRKAEAR 891
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
358-390 |
1.99e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 41.66 E-value: 1.99e-05
10 20 30
....*....|....*....|....*....|...
gi 1002986205 358 AKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQE 390
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
358-387 |
2.41e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.25 E-value: 2.41e-05
10 20 30
....*....|....*....|....*....|
gi 1002986205 358 AKSYNNLGNVYYSLGEDQKAIEFYQQSLAI 387
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
358-391 |
2.67e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 41.33 E-value: 2.67e-05
10 20 30
....*....|....*....|....*....|....
gi 1002986205 358 AKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEI 391
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERV 35
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
445-491 |
3.31e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.92 E-value: 3.31e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1002986205 445 GNVYYSLGEYQKAIEFYQQSLAIKREigdrrgEAKSWFNLGLTYYKL 491
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPD------NPEAYYNLGLAYYKL 41
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
241-431 |
3.36e-05 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 45.80 E-value: 3.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 241 RLSNLPLSDYRQEQQLAIEYYQKAIN-LQKELNLELDLV---ASLDSLADIYYSRGEYQKAIKSCQQSLAIKGEMGDRVG 316
Cdd:cd24145 106 KLGELNKDSELGKWELRERLLKKAVEiLLKLGELWMSPSevgAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQA 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 317 EAKSYIGLGNLYSSLREYQkaiefyQQSLAISREIEDPSREAKSYNNlgnvYYSLGED--QKAIEFYQ--QSLAIFQEID 392
Cdd:cd24145 186 NCHSLVLMNNEAAELALHA------LRKPLSSTLIEASRLPQKSRDQ----LLEAALKwaQKALDVAKsiKPKDRDPECD 255
|
170 180 190
....*....|....*....|....*....|....*....
gi 1002986205 393 DIRGVAYCynNLGNIYNYLGEYQKAIEFHQQSLAIKREI 431
Cdd:cd24145 256 QACALALY--NLGVIAEMLGNLDEARKLYKEAISLAKEL 292
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
360-393 |
4.33e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 40.60 E-value: 4.33e-05
10 20 30
....*....|....*....|....*....|....
gi 1002986205 360 SYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDD 393
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
367-526 |
4.35e-05 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 45.76 E-value: 4.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 367 VYYSLGEDQKAIEFYQQSLAIFQEiDDI--RGVAYcyNNLGNIYNYLGEYQKAIEFHQQSLAIKREISDITGEAYSYLGL 444
Cdd:pfam17874 10 LAISKGDAERALELAEQALALLPE-DDLlaRGLAT--FVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 445 GNVYYSLGEYQKAIEFYQQSLAIKREIGDRRGEAKSWFNLGLT--YYKLDRISEAKEAYLQARKLFQALG----LAGYVQ 518
Cdd:pfam17874 87 GEILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLAdlLYEWNDLEEAEQHAQQGIQLGRQWEpdaaVDAYVL 166
|
....*...
gi 1002986205 519 KCDQAIRQ 526
Cdd:pfam17874 167 LARIALAQ 174
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
398-430 |
5.29e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 5.29e-05
10 20 30
....*....|....*....|....*....|...
gi 1002986205 398 AYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKRE 430
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
327-470 |
1.42e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 44.22 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 327 LYSSLREYQKAIEFYQQSLAISREIEDPSREAKSYNnLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDIRGVAYCYNNLGN 406
Cdd:pfam17874 10 LAISKGDAERALELAEQALALLPEDDLLARGLATFV-LGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGE 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002986205 407 IYNYLGEYQKAIEFHQQSLAIKREISditGEAYS-----YLGLGNVYYSLGEYQKAIEFYQQSLAIKRE 470
Cdd:pfam17874 89 ILRAQGRLHQALETYQQALQLARDHG---LQHLPlhgflLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ 154
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
318-347 |
1.61e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 1.61e-04
10 20 30
....*....|....*....|....*....|
gi 1002986205 318 AKSYIGLGNLYSSLREYQKAIEFYQQSLAI 347
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
438-471 |
2.18e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 38.64 E-value: 2.18e-04
10 20 30
....*....|....*....|....*....|....
gi 1002986205 438 AYSYLGLGNVYYSLGEYQKAIEFYQQSLAIKREI 471
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERV 35
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
332-423 |
2.22e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 332 REYQKAIEFYQQslaISREIEDPSREAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDirgVAYCYNNLGNIYNYL 411
Cdd:COG1729 7 GDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPK---APDALLKLGLSYLEL 80
|
90
....*....|..
gi 1002986205 412 GEYQKAIEFHQQ 423
Cdd:COG1729 81 GDYDKARATLEE 92
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
318-350 |
2.38e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 2.38e-04
10 20 30
....*....|....*....|....*....|...
gi 1002986205 318 AKSYIGLGNLYSSLREYQKAIEFYQQSLAISRE 350
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
412-508 |
2.50e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.97 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 412 GEYQKAIEFHQQSLAIKREISDitgEAYSYLGLGNVYYSLGEYQKAIEFYQQSLaikrEIGDRRGEAKSwfNLGLTYYKL 491
Cdd:PRK02603 49 GEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQAL----ELNPKQPSALN--NIAVIYHKR 119
|
90
....*....|....*..
gi 1002986205 492 DRISEAKEAYLQARKLF 508
Cdd:PRK02603 120 GEKAEEAGDQDEAEALF 136
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
280-314 |
3.06e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 38.29 E-value: 3.06e-04
10 20 30
....*....|....*....|....*....|....*
gi 1002986205 280 SLDSLADIYYSRGEYQKAIKSCQQSLAIKGEMGDR 314
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
412-503 |
4.57e-04 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 39.96 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 412 GEYQKAIE-FhqQSLAIKREISDITGEAYsYLgLGNVYYSLGEYQKAIEFYQQSLAiKREIGDRRGEAksWFNLGLTYYK 490
Cdd:TIGR02795 14 GDYADAIQaF--QAFLKKYPKSTYAPNAH-YW-LGEAYYAQGDYADAAKAFLAVVK-KYPKSPKAPDA--LLKLGMSLQE 86
|
90
....*....|...
gi 1002986205 491 LDRISEAKEAYLQ 503
Cdd:TIGR02795 87 LGDKEKAKATLQQ 99
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
333-433 |
4.66e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.15 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 333 EYQKAIEFYQQSLaisREIEDPSREAKSYNNLGNVYYSLGEDQKAIEFYQQSLAIFQEIDDirgvayCYNNLGNIYNYLG 412
Cdd:CHL00033 50 EYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ------ALNNMAVICHYRG 120
|
90 100
....*....|....*....|.
gi 1002986205 413 EyqKAIEfhQQSLAIKREISD 433
Cdd:CHL00033 121 E--QAIE--QGDSEIAEAWFD 137
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
242-307 |
5.57e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 5.57e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002986205 242 LSNLPLSDYRQEQ-QLAIEYYQKAINLQKELNLE--LDLVASLDSLADIYYSRGEYQKAIKSCQQSLAI 307
Cdd:pfam13424 6 LNNLAAVLRRLGRyDEALELLEKALEIARRLLGPdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
250-526 |
5.90e-04 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.95 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 250 YRQEQQLAIEYYQKAINLQKELNLEL--------------------DLVASLDSLADIYYSRGEYQKAIKSCQQSLAIKG 309
Cdd:cd24145 20 DKPDPQKALKYYKEALEQADELGMDPfsdevtgirikiaemleklgMYKAAYEVLERLYLDCLRWTLKDDESERGHLIKR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 310 EMGDRVGEAKSYIGLGNLYSSLRE--YQKAIEFYQQSLAISREIEDPSReakSYNNLGNVYYSLGEDQKAIEFYQQSLai 387
Cdd:cd24145 100 DLRISIKLGELNKDSELGKWELRErlLKKAVEILLKLGELWMSPSEVGA---FLEELATAYDLYGRFCLALPLYMQAL-- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 388 fQEIDDIRGvayCYNNLGNIYnylgeYQKAIEFHQQSLAIKREISDITGEAYSylglGNVYYSLGEYQKAIEFYQQSLAI 467
Cdd:cd24145 175 -SLKGQILL---SQANCHSLV-----LMNNEAAELALHALRKPLSSTLIEASR----LPQKSRDQLLEAALKWAQKALDV 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002986205 468 KREI-GDRRGE------AKSWFNLGLTYYKLDRISEAKEAYLQARKLFQALGLAGYVQKCDQAIRQ 526
Cdd:cd24145 242 AKSIkPKDRDPecdqacALALYNLGVIAEMLGNLDEARKLYKEAISLAKELGFEEGVKEAEDELKR 307
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
438-467 |
7.81e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.12 E-value: 7.81e-04
10 20 30
....*....|....*....|....*....|
gi 1002986205 438 AYSYLGLGNVYYSLGEYQKAIEFYQQSLAI 467
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALEL 30
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
222-514 |
1.10e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 222 KKEPRLASLYASLAKIYNHRlsnlplsdyrQEQQLAIEYYQKAinlqkeLNLELDLVASLDSLADIYYSRGEYQKAIKSC 301
Cdd:TIGR02917 459 KKQPDNASLHNLLGAIYLGK----------GDLAKAREAFEKA------LSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 302 QQSLAI-KGEMGDRVGEAKSYIGLGNLYSSLREYQKAIEfyqqslaisreiEDPSREAKsYNNLGNVYYSLGEDQKAief 380
Cdd:TIGR02917 523 EKVLTIdPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE------------LNPQEIEP-ALALAQYYLGKGQLKKA--- 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 381 yqqsLAIFQEIDDI--RGVAYcYNNLGNIYNYLGEYQKAIEFHQQSLAIKREisditgEAYSYLGLGNVYYSLGEYQKAI 458
Cdd:TIGR02917 587 ----LAILNEAADAapDSPEA-WLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAI 655
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1002986205 459 EFYQQSLAIKreiGDRRgeaKSWFNLGLTYYKLDRISEAKE--AYLQARKLFQALGLA 514
Cdd:TIGR02917 656 TSLKRALELK---PDNT---EAQIGLAQLLLAAKRTESAKKiaKSLQKQHPKAALGFE 707
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
478-507 |
1.21e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.21e-03
10 20 30
....*....|....*....|....*....|
gi 1002986205 478 AKSWFNLGLTYYKLDRISEAKEAYLQARKL 507
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
358-388 |
1.26e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 1.26e-03
10 20 30
....*....|....*....|....*....|.
gi 1002986205 358 AKSYNNLGNVYYSLGEDQKAIEFYQQSLAIF 388
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELD 31
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
404-466 |
1.34e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.05 E-value: 1.34e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002986205 404 LGNIYNYLGEYQKAIEFHQQSLAIKREisditgeAYSYLGLGNVYYSLGEYQKAIEFYQQSLA 466
Cdd:COG3071 264 LGRLCLRNQLWGKAREYLEAALALRPS-------AEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
284-518 |
1.80e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 284 LADIYYSRGEYQKAIKSCQQSLAIKGEMgdrvgeAKSYIGLGNLYSSLREYQKAIEfyqQSLAISREIEDPSREAKSYnn 363
Cdd:TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLGYPK------NQVLPLLARAYLLQGKFQQVLD---ELPGKTLLDDEGAAELLAL-- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 364 LGNVYYSLGEDQKAIEFYQQSLAIFQE-IDDIRGVAYCYNNLGNiynylgeYQKAIEFHQQSLAIKREISDitgeaySYL 442
Cdd:TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRsLYAKLGLAQLALAENR-------FDEARALIDEVLTADPGNVD------ALL 197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002986205 443 GLGNVYYSLGEYQKAIEFYQQSLAIkreigdRRGEAKSWFNLGLTYYKLDRISEAkEAYLQA-RKLFQALGLAGYVQ 518
Cdd:TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIAL------RPNNIAVLLALATILIEAGEFEEA-EKHADAlLKKAPNSPLAHYLK 267
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
247-501 |
1.86e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 247 LSDYRQEQ-QLAIEYYQKAINLQKElNLELDLVASLdsladIYYSRGEYQKAIKSCQQSL--------------AIKGEM 311
Cdd:TIGR02917 269 LVDFQKKNyEDARETLQDALKSAPE-YLPALLLAGA-----SEYQLGNLEQAYQYLNQILkyapnshqarrllaSIQLRL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 312 GdRVGEAKSYIG---------------LGNLYSSLREYQKAIEFYQQSLAISREIedpsreAKSYNNLGNVYYSLGEDQK 376
Cdd:TIGR02917 343 G-RVDEAIATLSpalgldpddpaalslLGEAYLALGDFEKAAEYLAKATELDPEN------AAARTQLGISKLSQGDPSE 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 377 AIEFYQQSLaifqEIDDIRGVAycynNLGNIYNYL--GEYQKAIEfhqqslAIKREISDITGEAYSYLGLGNVYYSLGEY 454
Cdd:TIGR02917 416 AIADLETAA----QLDPELGRA----DLLLILSYLrsGQFDKALA------AAKKLEKKQPDNASLHNLLGAIYLGKGDL 481
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1002986205 455 QKAIEFYQQSLAIKreigdrRGEAKSWFNLGLTYYKLDRISEAKEAY 501
Cdd:TIGR02917 482 AKAREAFEKALSIE------PDFFPAAANLARIDIQEGNPDDAIQRF 522
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
325-372 |
2.17e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.91 E-value: 2.17e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1002986205 325 GNLYSSLREYQKAIEFYQQSLAIsreieDPSrEAKSYNNLGNVYYSLG 372
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKL-----DPD-NPEAYYNLGLAYYKLG 42
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
478-507 |
2.48e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 2.48e-03
10 20 30
....*....|....*....|....*....|
gi 1002986205 478 AKSWFNLGLTYYKLDRISEAKEAYLQARKL 507
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
290-386 |
2.55e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 38.84 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 290 SRGEYQKAIKSCQQSLAIKGEMGDRvgeakSYI--GLGNLYSSLREYQKAIEFYQQSLAISreiedpSREAKSYNNLGNV 367
Cdd:CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDR-----SYIlyNIGLIHTSNGEHTKALEYYFQALERN------PFLPQALNNMAVI 115
|
90
....*....|....*....
gi 1002986205 368 YYSLGEdqKAIEFYQQSLA 386
Cdd:CHL00033 116 CHYRGE--QAIEQGDSEIA 132
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
222-346 |
2.79e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 39.71 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 222 KKEPRLASLYASLAKIYNHRlsnlplsdyrQEQQLAIEYYQKAINLQKelnlelDLVASLDSLADIYYSRGEYQKAIKSC 301
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQ----------GDYEEAIAALERALEQDP------DYLPALPRLAELYEKLGDPEEALELL 235
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1002986205 302 QQSLAIKGEMGDrvgeaksYIGLGNLYSSLREYQKAIEFYQQSLA 346
Cdd:COG2956 236 RKALELDPSDDL-------LLALADLLERKEGLEAALALLERQLR 273
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
478-508 |
2.92e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 2.92e-03
10 20 30
....*....|....*....|....*....|.
gi 1002986205 478 AKSWFNLGLTYYKLDRISEAKEAYLQARKLF 508
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELD 31
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
285-373 |
3.45e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 38.50 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 285 ADIYY-------SRGEYQKAIKSCQQSLAIKGEMGDRvgeakSYI--GLGNLYSSLREYQKAIEFYQQSLaisreiEDPS 355
Cdd:PRK02603 35 AFVYYrdgmsaqADGEYAEALENYEEALKLEEDPNDR-----SYIlyNMGIIYASNGEHDKALEYYHQAL------ELNP 103
|
90
....*....|....*...
gi 1002986205 356 REAKSYNNLGNVYYSLGE 373
Cdd:PRK02603 104 KQPSALNNIAVIYHKRGE 121
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
318-351 |
3.47e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.56 E-value: 3.47e-03
10 20 30
....*....|....*....|....*....|....
gi 1002986205 318 AKSYIGLGNLYSSLREYQKAIEFYQQSLAISREI 351
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERV 35
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
255-526 |
3.65e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.53 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 255 QLAIEYYQKAinlqkeLNLELDLVASLDSLADIYYSRGEYQKAIKSCQQSLAIKGEmgdrvGEAKSYIGLGNLYS---SL 331
Cdd:cd24142 17 ELALKFLQRA------LELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD-----GGYEKYLYLGQLSGgeeAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 332 REYQKAIEFYQQSLAISREIEDPSREAKSY--NNLGNVYYSLGE----D---------------QKAIEFYQQSLAIFQe 390
Cdd:cd24142 86 QYYEKGIEILEEELQALQAASAEAEEEAEElkRKLSSALCALAEiymtDlcdepdaeqrceeliTKALELDPTNPEALQ- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 391 iddirgvaycynNLGNIYNYLGEYQKAIEFHQQSLAI----KREISDITGEAYSYLGLGNVYYS----------LGEYQK 456
Cdd:cd24142 165 ------------TLASLRISQQRPDEAKEALRRSLELwkdlKEEDEEEAEEDEAEEEDVPSYEFrislakllieLEMYEE 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002986205 457 AIEFYQQSLAIKREIGDrrgeakSWFNLGLTYYKLDR--ISEAKEAYLQARKLFQ-ALGLAGYVQKCDQAIRQ 526
Cdd:cd24142 233 ALEVLEQLLDEDDEDVE------VWYLLGWAYYLLGEkeQEEAAELLRDARELLEkALKLYEKLEYEDEELLE 299
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
412-513 |
4.23e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 39.84 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 412 GEYQKAIEFHQQSLAIKREISDITGEAYSYLGLGNVYYSLGEYQKAIEFYQQSLAIK-------REIGDRRGEAKSWFNL 484
Cdd:COG3899 719 GAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARalaalaaLRHGNPPASARAYANL 798
|
90 100
....*....|....*....|....*....
gi 1002986205 485 GLTYykLDRISEAKEAYLQARKLFQALGL 513
Cdd:COG3899 799 GLLL--LGDYEEAYEFGELALALAERLGD 825
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
405-452 |
5.37e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 34.75 E-value: 5.37e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1002986205 405 GNIYNYLGEYQKAIEFHQQSLAIKREISDItgeaysYLGLGNVYYSLG 452
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEA------YYNLGLAYYKLG 42
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
285-463 |
7.97e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 38.45 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 285 ADIYYSRGEYQKAIKSCQQSLAIKGEmgDRV---GEAKSYIGLGNLYssLREYQKAIEFYQQSLAISREIEDPSREAKSY 361
Cdd:pfam17874 8 AQLAISKGDAERALELAEQALALLPE--DDLlarGLATFVLGEAYLC--LGDLDAALQAMREAEALARRADSPHVTLWAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002986205 362 NNLGNVYYSLGEDQKAIEFYQQSLAIFQEID--DIRGVAYCYNNLGNIYNYLGEYQKAIEFHQQSLAIKREIS-DITGEA 438
Cdd:pfam17874 84 LQQGEILRAQGRLHQALETYQQALQLARDHGlqHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDA 163
|
170 180
....*....|....*....|....*
gi 1002986205 439 ysYLGLGNVYYSLGEYQKAIEFYQQ 463
Cdd:pfam17874 164 --YVLLARIALAQGELEEALTLLRR 186
|
|
| |
