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Conserved domains on  [gi|1002994679|ref|WP_061439059|]
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MULTISPECIES: type II secretion system protein M [Alteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T2SSM super family cl01222
Type II secretion system (T2SS), protein M; This family of membrane proteins consists of Type ...
 1-73 6.71e-05

Type II secretion system (T2SS), protein M; This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.


The actual alignment was detected with superfamily member COG3149:

Pssm-ID: 470120  Cd Length: 165  Bit Score: 41.86  E-value: 6.71e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002994679   1 MNQY-QQLSEKFSALESREKQLITWVSFALIIYLFFWFGVSPALDDLSATDKAVIRKESEHKALVIQRDAIQEA 73
Cdd:COG3149     1 MNALlERLKAWWQQLSPRERRLLLAGAAVLLLALLYLLVWQPLLRAREQAQAQLAALQAQLAWMQQQAAEAQAL 74
 
Name Accession Description Interval E-value
PulM COG3149
Type II secretory pathway, component PulM [Intracellular trafficking, secretion, and vesicular ...
 1-73 6.71e-05

Type II secretory pathway, component PulM [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442383  Cd Length: 165  Bit Score: 41.86  E-value: 6.71e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002994679   1 MNQY-QQLSEKFSALESREKQLITWVSFALIIYLFFWFGVSPALDDLSATDKAVIRKESEHKALVIQRDAIQEA 73
Cdd:COG3149     1 MNALlERLKAWWQQLSPRERRLLLAGAAVLLLALLYLLVWQPLLRAREQAQAQLAALQAQLAWMQQQAAEAQAL 74
 
Name Accession Description Interval E-value
PulM COG3149
Type II secretory pathway, component PulM [Intracellular trafficking, secretion, and vesicular ...
 1-73 6.71e-05

Type II secretory pathway, component PulM [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442383  Cd Length: 165  Bit Score: 41.86  E-value: 6.71e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002994679   1 MNQY-QQLSEKFSALESREKQLITWVSFALIIYLFFWFGVSPALDDLSATDKAVIRKESEHKALVIQRDAIQEA 73
Cdd:COG3149     1 MNALlERLKAWWQQLSPRERRLLLAGAAVLLLALLYLLVWQPLLRAREQAQAQLAALQAQLAWMQQQAAEAQAL 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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