|
Name |
Accession |
Description |
Interval |
E-value |
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
138-542 |
2.07e-124 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
:
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 371.24 E-value: 2.07e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 138 VILAAPTRSGKGVGVVIPNL--LEYGESLVVLDIKQENFDLTSGWRASQGQEIYLFNPFaEDRRTHRWNPLSYVSDDpaf 215
Cdd:COG3505 2 VLVIGPTGSGKTVGLVIPNLtqLARGESVVVTDPKGDLAELTAGFRRRAGYDVYVFDPF-DPERSHRWNPLDEIRDP--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 216 rvSDLMSIAAMLYPD---GAEDQKFWVSQARNAFMAFTLYLFEnwdderssgfpggAGTPTLGAVYRLSSGDGTDLKKYL 292
Cdd:COG3505 78 --ADAQELAEALIPAlggGGGGDPFWREAARALLAALILALAE-------------EGRRTLADVYRLLSEPEEELRELL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 293 KTLSERPflSANARSAFANMLSQADETFASILGTFKEPLNPWINPVLDKATSCNDFLLTDVRKKKMTIYIGIQPNKLAES 372
Cdd:COG3505 143 EALPESP--HPPVADTLAAFLNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIREKGTLYLVLPPDDLSTL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 373 RLIINLFFSQLINLNTKELPKSNpDLKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSR 452
Cdd:COG3505 221 APLLRLLLSQLIRALLRRAERSG-RLPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 453 TIITNHALQILYAPREQQDANDYSDMLGYTTVRKKNVTHAR-EKTHNFTEERRALMLPQELKAMGPDMEVFLYEGIPhPV 531
Cdd:COG3505 300 TILGNCGTKIFLGVNDPETAEYLSELLGKRTVERRSESRSRgSRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGP-PI 378
|
410
....*....|.
gi 1003989376 532 KCDKIRYYKDR 542
Cdd:COG3505 379 RAKKIRYYKDP 389
|
|
| PhoR super family |
cl13277 |
Phosphate regulon sensor protein PhoR; This family is only found in bacteria. Family members ... |
7-48 |
3.84e-03 |
|
Phosphate regulon sensor protein PhoR; This family is only found in bacteria. Family members include PhoR. A member of the two-component regulatory system PhoR/PhoB involved in the phosphate regulon genes expression. PhoR is the bifunctional histidine autokinase/phospho-PhoB phosphatase that donates a phosphoryl group to PhoB when environmental Pi is limiting and removes the phosphoryl group from phosphorylated PhoB (PhoB-P) when environmental Pi is abundant.
The actual alignment was detected with superfamily member pfam11808:
Pssm-ID: 432090 Cd Length: 84 Bit Score: 36.43 E-value: 3.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1003989376 7 YLLIAIITLATLLLGFVFSGYLTLLFLGLDTQLFtWNTYYQY 48
Cdd:pfam11808 5 LWRLALLLLPALLLGLLFGHLAAALLLALLAYLA-WHLYQLL 45
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
138-542 |
2.07e-124 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 371.24 E-value: 2.07e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 138 VILAAPTRSGKGVGVVIPNL--LEYGESLVVLDIKQENFDLTSGWRASQGQEIYLFNPFaEDRRTHRWNPLSYVSDDpaf 215
Cdd:COG3505 2 VLVIGPTGSGKTVGLVIPNLtqLARGESVVVTDPKGDLAELTAGFRRRAGYDVYVFDPF-DPERSHRWNPLDEIRDP--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 216 rvSDLMSIAAMLYPD---GAEDQKFWVSQARNAFMAFTLYLFEnwdderssgfpggAGTPTLGAVYRLSSGDGTDLKKYL 292
Cdd:COG3505 78 --ADAQELAEALIPAlggGGGGDPFWREAARALLAALILALAE-------------EGRRTLADVYRLLSEPEEELRELL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 293 KTLSERPflSANARSAFANMLSQADETFASILGTFKEPLNPWINPVLDKATSCNDFLLTDVRKKKMTIYIGIQPNKLAES 372
Cdd:COG3505 143 EALPESP--HPPVADTLAAFLNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIREKGTLYLVLPPDDLSTL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 373 RLIINLFFSQLINLNTKELPKSNpDLKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSR 452
Cdd:COG3505 221 APLLRLLLSQLIRALLRRAERSG-RLPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 453 TIITNHALQILYAPREQQDANDYSDMLGYTTVRKKNVTHAR-EKTHNFTEERRALMLPQELKAMGPDMEVFLYEGIPhPV 531
Cdd:COG3505 300 TILGNCGTKIFLGVNDPETAEYLSELLGKRTVERRSESRSRgSRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGP-PI 378
|
410
....*....|.
gi 1003989376 532 KCDKIRYYKDR 542
Cdd:COG3505 379 RAKKIRYYKDP 389
|
|
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
126-555 |
6.14e-110 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 336.30 E-value: 6.14e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 126 GGKLVRLDGQQFVILAAPTRSGKGVGVVIPNLLEYGESLVVLDIKQENFDLTSGWRASQGQEIYLFNPFAEDRRThRWNP 205
Cdd:pfam02534 35 GGLLNTDGDFSHVLVFAGTGSGKGVGVVIPNLLVWKGSIVVLDPKGELWELTSGIREKQGRKVFVLEPFNPKTSD-RYNP 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 206 LSYVSDDPAFRVSDLMSIAAMLYPD---GAEDqkFWVSQARNAFMA-FTLYLFEnwdderssgfpggAGTPTLGAVYR-- 279
Cdd:pfam02534 114 LDYIDRGSEQETEDILKVASLIMPGkggGRDD--FFNNTARQLLVAlIALVLRS-------------KPTRTIGQTLRfv 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 280 ---LSSGDGTDLKKYLKTLSE-RPFLSANARSAFANMLSQADETFASILGTFKEPLNPWINPVLDKATSCNDFLLTDVRK 355
Cdd:pfam02534 179 rnmLSEPNLIENKELAVLLNElDGSHHDRVGDNLRFYVNKTDETRSSVIGTAVSELALYADPEVRNATSGSDFDLRDLRR 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 356 KKMTIYIGIQPNKLAESRLIINLFFSQLINLNTKELPKSNPdLKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPI 435
Cdd:pfam02534 259 DKTSVYVILNPKDLTVVSPLLRVFFQMVVELLYLKLPNGDG-RPKEVLFLLDEFPSLGKLEILEEALATIRGYGIRLTTI 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 436 IQSMSQLDATYGREVSRTIITNHALQILYAPREQQDANDY-SDMLGYTTVRKKNV---THAREKTHN--FTEERRALMLP 509
Cdd:pfam02534 338 CQSISQLKETYGGEGAKSILSNHAVVICFAASNDEETAKYiSKLLGKTTVEVESSsksTDAKGSSRSrsISEVQRPLLTP 417
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1003989376 510 QELKAMGPDMEVFLYEGIPhPVKCDKIRYYKDRYFTSRLLPKVDVP 555
Cdd:pfam02534 418 DEVLRMPDDEQIVITKGQP-PIKCKKALYFKDEDFKAELNKPTALT 462
|
|
| PRK13897 |
PRK13897 |
type IV secretion system component VirD4; Provisional |
8-555 |
3.54e-96 |
|
type IV secretion system component VirD4; Provisional
Pssm-ID: 237549 [Multi-domain] Cd Length: 606 Bit Score: 305.18 E-value: 3.54e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 8 LLIAIITLATLLLGFVFSGYLTLLFL-GLDTQLFT-------------WNTYYQYVHAI-GQPQVAPFVGKIKWAGYVGF 72
Cdd:PRK13897 13 LGHAIIHFVVLEFCFYISGAFFALFTwGPGALDFNainpsiadfpwayWPTIFNYIINVwGQPKIYDYNLKLKLLASLLG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 73 GLPLLVLLVAGLVLLLK-----KDKRSLHGDARFATGADLAKHGMFKKTGqsIVVGSHGGKLVRLDGQQFVILAAPTRSG 147
Cdd:PRK13897 93 PAIIVIIFYIKLRERIKswrpfKKKEKVHGDARWASESDIRKAGLRSKKG--MLLGKDKGGYFVADGFQHALLFAPTGSG 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 148 KGVGVVIPNLLEYGESLVVLDIKQENFDLTSGWRASQGQEIYLFNPFAEDRRTHRWNPLSYVSDDPAFRVSDLMSIAAML 227
Cdd:PRK13897 171 KGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPANPDGISHCYNPLDWVSTKPGQMVDDVQKIANLI 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 228 YPdgaeDQKFWVSQARNAFMAFTLYLFEnwDDERSSGFpggagtptlGAVYRLSSGDGT--DLKKYLKTLSERpfLSANA 305
Cdd:PRK13897 251 MP----EQDFWNNEARSLFLGVVLYLLA--DPEKVKSF---------GEVVRTMRSDDVvyNLAVVLDTLGKV--IHPVA 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 306 RSAFANMLSQADETFASILGTFKEPLNPWINPVLDKATSCNDFLLTDVRKKKMTIYIGIQPNKLAESRLIINLFFSQLIN 385
Cdd:PRK13897 314 YMNIAAFLQKADKERSGVISTMNSSLELWANPLIDTATASSDFNIQEFKKKKTTVYVGLTPDNLTRLQPLMQVFYQQATE 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 386 LNTKELPKSnpDLKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSRTIITNHALQILYA 465
Cdd:PRK13897 394 FLCRKLPDK--DEPYGVLFLMDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFA 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 466 PREQQDANDYSDMLGYTTVRKKNVTHAR-------EKTHNFTEERRALMLPQELKAMGPDMEVFLYEGIPhPVKCDKIRY 538
Cdd:PRK13897 472 ANNIETANLISQLVGNKTVEQESLNKPKfldlnpaSRSLHISEVQRALLLPQEVIMLPRDEQILLIESTY-PIKSKKIKY 550
|
570
....*....|....*..
gi 1003989376 539 YKDRYFTSRLLPKVDVP 555
Cdd:PRK13897 551 YEDKFFTSRLLPPTFVP 567
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
335-463 |
3.82e-16 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 75.33 E-value: 3.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 335 INPVLDKATSCNDFLLTDVrkkKMTIYIGIQPNKLAeSRLIINLFFSQLINLNTKELPKSNPDLKYQCLLLMDEFTSIGK 414
Cdd:cd01127 17 VIPLLDQAARGGSVIITDP---KGELFLVIPDRDDS-FAALRALFFNQLFRALTELASLSPGRLPRRVWFILDEFANLGR 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1003989376 415 VEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSRTIITNHALQIL 463
Cdd:cd01127 93 IPNLPNLLATGRKRGISVVLILQSLAQLEAVYGKDGAQTILGNCNTKLY 141
|
|
| PhoR |
pfam11808 |
Phosphate regulon sensor protein PhoR; This family is only found in bacteria. Family members ... |
7-48 |
3.84e-03 |
|
Phosphate regulon sensor protein PhoR; This family is only found in bacteria. Family members include PhoR. A member of the two-component regulatory system PhoR/PhoB involved in the phosphate regulon genes expression. PhoR is the bifunctional histidine autokinase/phospho-PhoB phosphatase that donates a phosphoryl group to PhoB when environmental Pi is limiting and removes the phosphoryl group from phosphorylated PhoB (PhoB-P) when environmental Pi is abundant.
Pssm-ID: 432090 Cd Length: 84 Bit Score: 36.43 E-value: 3.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1003989376 7 YLLIAIITLATLLLGFVFSGYLTLLFLGLDTQLFtWNTYYQY 48
Cdd:pfam11808 5 LWRLALLLLPALLLGLLFGHLAAALLLALLAYLA-WHLYQLL 45
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
138-542 |
2.07e-124 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 371.24 E-value: 2.07e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 138 VILAAPTRSGKGVGVVIPNL--LEYGESLVVLDIKQENFDLTSGWRASQGQEIYLFNPFaEDRRTHRWNPLSYVSDDpaf 215
Cdd:COG3505 2 VLVIGPTGSGKTVGLVIPNLtqLARGESVVVTDPKGDLAELTAGFRRRAGYDVYVFDPF-DPERSHRWNPLDEIRDP--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 216 rvSDLMSIAAMLYPD---GAEDQKFWVSQARNAFMAFTLYLFEnwdderssgfpggAGTPTLGAVYRLSSGDGTDLKKYL 292
Cdd:COG3505 78 --ADAQELAEALIPAlggGGGGDPFWREAARALLAALILALAE-------------EGRRTLADVYRLLSEPEEELRELL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 293 KTLSERPflSANARSAFANMLSQADETFASILGTFKEPLNPWINPVLDKATSCNDFLLTDVRKKKMTIYIGIQPNKLAES 372
Cdd:COG3505 143 EALPESP--HPPVADTLAAFLNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIREKGTLYLVLPPDDLSTL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 373 RLIINLFFSQLINLNTKELPKSNpDLKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSR 452
Cdd:COG3505 221 APLLRLLLSQLIRALLRRAERSG-RLPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 453 TIITNHALQILYAPREQQDANDYSDMLGYTTVRKKNVTHAR-EKTHNFTEERRALMLPQELKAMGPDMEVFLYEGIPhPV 531
Cdd:COG3505 300 TILGNCGTKIFLGVNDPETAEYLSELLGKRTVERRSESRSRgSRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGP-PI 378
|
410
....*....|.
gi 1003989376 532 KCDKIRYYKDR 542
Cdd:COG3505 379 RAKKIRYYKDP 389
|
|
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
126-555 |
6.14e-110 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 336.30 E-value: 6.14e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 126 GGKLVRLDGQQFVILAAPTRSGKGVGVVIPNLLEYGESLVVLDIKQENFDLTSGWRASQGQEIYLFNPFAEDRRThRWNP 205
Cdd:pfam02534 35 GGLLNTDGDFSHVLVFAGTGSGKGVGVVIPNLLVWKGSIVVLDPKGELWELTSGIREKQGRKVFVLEPFNPKTSD-RYNP 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 206 LSYVSDDPAFRVSDLMSIAAMLYPD---GAEDqkFWVSQARNAFMA-FTLYLFEnwdderssgfpggAGTPTLGAVYR-- 279
Cdd:pfam02534 114 LDYIDRGSEQETEDILKVASLIMPGkggGRDD--FFNNTARQLLVAlIALVLRS-------------KPTRTIGQTLRfv 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 280 ---LSSGDGTDLKKYLKTLSE-RPFLSANARSAFANMLSQADETFASILGTFKEPLNPWINPVLDKATSCNDFLLTDVRK 355
Cdd:pfam02534 179 rnmLSEPNLIENKELAVLLNElDGSHHDRVGDNLRFYVNKTDETRSSVIGTAVSELALYADPEVRNATSGSDFDLRDLRR 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 356 KKMTIYIGIQPNKLAESRLIINLFFSQLINLNTKELPKSNPdLKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPI 435
Cdd:pfam02534 259 DKTSVYVILNPKDLTVVSPLLRVFFQMVVELLYLKLPNGDG-RPKEVLFLLDEFPSLGKLEILEEALATIRGYGIRLTTI 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 436 IQSMSQLDATYGREVSRTIITNHALQILYAPREQQDANDY-SDMLGYTTVRKKNV---THAREKTHN--FTEERRALMLP 509
Cdd:pfam02534 338 CQSISQLKETYGGEGAKSILSNHAVVICFAASNDEETAKYiSKLLGKTTVEVESSsksTDAKGSSRSrsISEVQRPLLTP 417
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1003989376 510 QELKAMGPDMEVFLYEGIPhPVKCDKIRYYKDRYFTSRLLPKVDVP 555
Cdd:pfam02534 418 DEVLRMPDDEQIVITKGQP-PIKCKKALYFKDEDFKAELNKPTALT 462
|
|
| PRK13897 |
PRK13897 |
type IV secretion system component VirD4; Provisional |
8-555 |
3.54e-96 |
|
type IV secretion system component VirD4; Provisional
Pssm-ID: 237549 [Multi-domain] Cd Length: 606 Bit Score: 305.18 E-value: 3.54e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 8 LLIAIITLATLLLGFVFSGYLTLLFL-GLDTQLFT-------------WNTYYQYVHAI-GQPQVAPFVGKIKWAGYVGF 72
Cdd:PRK13897 13 LGHAIIHFVVLEFCFYISGAFFALFTwGPGALDFNainpsiadfpwayWPTIFNYIINVwGQPKIYDYNLKLKLLASLLG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 73 GLPLLVLLVAGLVLLLK-----KDKRSLHGDARFATGADLAKHGMFKKTGqsIVVGSHGGKLVRLDGQQFVILAAPTRSG 147
Cdd:PRK13897 93 PAIIVIIFYIKLRERIKswrpfKKKEKVHGDARWASESDIRKAGLRSKKG--MLLGKDKGGYFVADGFQHALLFAPTGSG 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 148 KGVGVVIPNLLEYGESLVVLDIKQENFDLTSGWRASQGQEIYLFNPFAEDRRTHRWNPLSYVSDDPAFRVSDLMSIAAML 227
Cdd:PRK13897 171 KGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPANPDGISHCYNPLDWVSTKPGQMVDDVQKIANLI 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 228 YPdgaeDQKFWVSQARNAFMAFTLYLFEnwDDERSSGFpggagtptlGAVYRLSSGDGT--DLKKYLKTLSERpfLSANA 305
Cdd:PRK13897 251 MP----EQDFWNNEARSLFLGVVLYLLA--DPEKVKSF---------GEVVRTMRSDDVvyNLAVVLDTLGKV--IHPVA 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 306 RSAFANMLSQADETFASILGTFKEPLNPWINPVLDKATSCNDFLLTDVRKKKMTIYIGIQPNKLAESRLIINLFFSQLIN 385
Cdd:PRK13897 314 YMNIAAFLQKADKERSGVISTMNSSLELWANPLIDTATASSDFNIQEFKKKKTTVYVGLTPDNLTRLQPLMQVFYQQATE 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 386 LNTKELPKSnpDLKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSRTIITNHALQILYA 465
Cdd:PRK13897 394 FLCRKLPDK--DEPYGVLFLMDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFA 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 466 PREQQDANDYSDMLGYTTVRKKNVTHAR-------EKTHNFTEERRALMLPQELKAMGPDMEVFLYEGIPhPVKCDKIRY 538
Cdd:PRK13897 472 ANNIETANLISQLVGNKTVEQESLNKPKfldlnpaSRSLHISEVQRALLLPQEVIMLPRDEQILLIESTY-PIKSKKIKY 550
|
570
....*....|....*..
gi 1003989376 539 YKDRYFTSRLLPKVDVP 555
Cdd:PRK13897 551 YEDKFFTSRLLPPTFVP 567
|
|
| PRK13850 |
PRK13850 |
type IV secretion system protein VirD4; Provisional |
92-542 |
3.55e-79 |
|
type IV secretion system protein VirD4; Provisional
Pssm-ID: 237531 [Multi-domain] Cd Length: 670 Bit Score: 262.12 E-value: 3.55e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 92 KRSLHGDARFATGADLAKHGMFKKTG--QSIVVGSHGGKLVR----LDGQQ-FVILAAPTRSGKGVGVVIPNLLEYGESL 164
Cdd:PRK13850 89 NREHHGTARWAEEGEMRHAGYLQRYSriTGPIFGKTCGPRWFgsylTNGEQpHSLVVAPTRAGKGVGVVIPTLLTFKGSV 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 165 VVLDIKQENFDLTSGWRASQGQEIYLFNPFAEDRRTHRWNPLSYVSDDPAFR-VSDLMSIAAMLYPDGAEDQKFWVSQAR 243
Cdd:PRK13850 169 IALDVKGELFELTSRARKASGDAVFKFAPLDPERRTHCYNPVLDIAALPPERrFTETRRLAANLITAKGKGAEGFIDGAR 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 244 NAFMAFTLYLFENwdderssgfpggaGTPTLGAVYRLSSGDGTDLKKYlKTLSERPfLSANARSAFANMLSQADETFASI 323
Cdd:PRK13850 249 DLFVAGILACIER-------------GTPTIGAVYDLFAQPGEKYKLF-AQLAEET-QNKEAQRIFDNMAGNDTKILTSY 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 324 LGTFKE-PLNPWINPVLDKATSCNDFLLTDVRKKKMTIYIGIQPNKLAESRLIINLFFSQLINLNTKELPKSnpDLKYQC 402
Cdd:PRK13850 314 TSVLGDgGLNLWADPLVKAATSRSDFSVYDLRRKRTCIYLCVSPNDLEVVAPLMRLLFQQVVSILQRSLPGK--DERHEV 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 403 LLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSRTIITNHALQILYAPREQQDANDYSDMLG-Y 481
Cdd:PRK13850 392 LFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGdY 471
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1003989376 482 T-TVRKKNVTHAREKTHNF--TEERRALMLPQELKAMGPDMEVFLYEGIPhPVKCDKIRYYKDR 542
Cdd:PRK13850 472 TfKARSTSYSQARMFDHNIqiSDQGAPLLRPEQVRLLDDDTEIVLIKGQP-PLKLRKVRYYSDR 534
|
|
| PRK13880 |
PRK13880 |
conjugal transfer coupling protein TraG; Provisional |
95-547 |
2.34e-53 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237540 Cd Length: 636 Bit Score: 191.88 E-value: 2.34e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 95 LHGDARFATGADLAKHGMFKK--------------TGQSIVVGS---HGGKL--VRLDGQQFVILAAPTRSGKGVGVVIP 155
Cdd:PRK13880 116 LHGSARWAEKKDIQAAGLLPRernvleivtgkaapTATGVYVGGwqdKDGNFhyLRHNGPEHVLTYAPTRSGKGVGLVVP 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 156 NLLEYGESLVVLDIKQENFDLTSGWRA-SQGQEIYLFNPfAEDRRTHRWNPLSYVSDDPAFRVSDLMSIAAMLY-PDGAE 233
Cdd:PRK13880 196 TLLSWGHSSVITDLKGELWALTAGWRQkHAKNKVLRFEP-ASLSGSVCWNPLDEIRLGTEYEVGDVQNLATLIVdPDGKG 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 234 DQKFWVSQARNAFMAFTLYLFENWDDErssgfpggAGTPTLGAVYRLSSGDGTDLKKYLKTLSE--------RPFLSANA 305
Cdd:PRK13880 275 LESHWQKTAFALLVGVILHALYKAKNE--------GGTATLPSVDAMLADPNRDIGELWMEMTTyghvdgqnHPAIGSAA 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 306 RsafaNMLSQADETFASILGTFKEPLNPWINPVLDKATSCNDFLLTDV--RKKKMTIYIGIQPNKLAE----SRLIINLF 379
Cdd:PRK13880 347 R----DMMDRPEEEAGSVLSTAKSYLALYRDPVVARNVSRSDFRIKDLmhHDDPVSLYIVTQPNDKARlrplVRVMVNMI 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 380 FSQLINLNTKELPKSNPDLKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATY-GREVSRTIITNH 458
Cdd:PRK13880 423 VRLLADKMDFENGRPVAHYKHRLLMMLDEFPSLGKLEILQESLAFVAGYGIKCYLICQDINQLKSREtGYGHDESITSNC 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 459 ALQILYAPREQQDANDYSDMLGYTTVRKKNVTHAREKT--------HNFTEERRALMLPQELKAM-GP------------ 517
Cdd:PRK13880 503 HVQNAYPPNRVETAEHLSKLTGQTTVVKEQITTSGRRTsamlgqvsRTYQEVQRPLLTPDECLRMpGPkkdakgeieeag 582
|
490 500 510
....*....|....*....|....*....|
gi 1003989376 518 DMEVFLyEGIPhPVKCDKIRYYKDRYFTSR 547
Cdd:PRK13880 583 DMVVYV-AGYP-AIYGKQPLYFKDPVFQAR 610
|
|
| PRK13876 |
PRK13876 |
conjugal transfer coupling protein TraG; Provisional |
97-550 |
6.45e-43 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237538 Cd Length: 663 Bit Score: 162.79 E-value: 6.45e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 97 GDARFATGADLAKHGMFKKTGqsIVVGSHGGKLVRLDGQQFVILAAPTRSGKGVGVVIPNLLEYGESLVVLDIKQENFDL 176
Cdd:PRK13876 108 GSARWAERREIRAAGLLGPDG--VVLGRHDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 177 TSGWRASQGQeIYLFNPfaEDRRTHRWNPLSYVSDDpAFRVSDLMSIAAMLY-PDGAEDQkfwvsqaRNafmaftlylfe 255
Cdd:PRK13876 186 TAGFRARFGR-VLLFDP--TNAKSAAYNPLLEVRRG-EWEVRDVQNIADILVdPEGSLER-------RN----------- 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 256 NWDDERSSGFPGG------AGT-PTLGAVYRLSSGDG----TDLKKYLKT--LSE-----------RPFL--SANARSAf 309
Cdd:PRK13876 244 HWEKTSHALLVGAilhvlyAEEdKTLAGVANFLSDPKrpieATLRAMMTTphLGEagphpvvasaaRELLnkSDNERSG- 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 310 anMLSQAdetfASILGTFKEplnpwinPVLDKATSCNDFLLTDV--RKKKMTIYIGIQPNKLAESRLIINLFFSQLINLN 387
Cdd:PRK13876 323 --VLSTA----MSFLGLYRD-------PVVAEVTSRCDWRIADLvaGERPVSLYLVVPPSDISRTKPLIRLILNQIGRRL 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 388 TKELPKSNPdlKYQCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSrtIITNHALQILYAPR 467
Cdd:PRK13876 390 TEDLDGKAR--RHRLLLMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGQNNS--ILDNCHVRVSFATN 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 468 EQQDANDYSDMLGYTTVRK--KN------------VTHAREKThnfteeRRALMLPQELKAMGPDMEVFLYEGIPhPVKC 533
Cdd:PRK13876 466 DERTAKRVSDALGTATELRamKNyaghrlspwlghLMVSRQET------ARPLLTPGEVMQLPPDDEIVMVSGVP-PIRA 538
|
490
....*....|....*..
gi 1003989376 534 DKIRYYKDRYFTSRLLP 550
Cdd:PRK13876 539 KKARYYEDARFKERVLP 555
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
402-515 |
1.74e-25 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 101.57 E-value: 1.74e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 402 CLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSRTIITNHALQILYAPREQQDANDYSDMLGY 481
Cdd:pfam12696 2 VLFVLDEFANLGKIPDLEKLISTGRSRGISLMLILQSIAQLEELYGKDGAETILGNCNTKVFLGGGDEETAKYLSKLLGK 81
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1003989376 482 TTV------RKKNVTHAREKTHNFT--EERRALMLPQELKAM 515
Cdd:pfam12696 82 YTVvstttsSSSSGSGGSGSSSSSSsqLVGRPLLTPDELRRL 123
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
130-529 |
3.12e-23 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 101.60 E-value: 3.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 130 VRLDGQQFVILAApTRSGKGVGV--VIPNLLEYGESLVVLDIKQenfDLTSGWrASQGQEIyLFNPFaeDRRTHRWNPLS 207
Cdd:pfam10412 11 KRSETRHTLIIGT-TGSGKTQALrgLLDQARARGDRAIIFDLTG---AFTERF-YDPGRDI-LLNPL--DARSPAWSPFA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 208 YVSDDPAFRvsdlmSIAAMLYP-DGAEDQKFWVSQARNAFMAFTLYLfenWDDERSSgfpggagTPTLgaVYRLSSGDGT 286
Cdd:pfam10412 83 ECKTPADFA-----AIAAALIPeDGGGSDPFWALAARTVLVDTLRAL---QRTGRKT-------NAAL--LRALLTADLD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 287 DLKKYLK-TLSERPFLSANARsafanmlsqadeTFASILGTfkepLNPWINPVLDKATSCNDFLLTD-VRKKKMT--IYI 362
Cdd:pfam10412 146 ELHELLAgTAAAPLTAPEAER------------TTASIRAT----LATNLRALRFLAPDGERFSIREwITEEDPGgwLFI 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 363 GIQPNKLAESRLIINLFFSQLINLnTKELPkSNPDLKyqCLLLMDEFTSIGKVEIIASAVSYMAGYNIRLLPIIQSMSQL 442
Cdd:pfam10412 210 TYRADQRAALRPLLSCWLDLAIRA-LLSLP-PSRDRR--LWFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQL 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 443 DATYGREVSRTIITNHALQILYAPREQQDANDYSDMLGYTTVRKKNVTHAREK-------THNFTEERRALMLPQELKAM 515
Cdd:pfam10412 286 REIYGEDGAQTILSNCGTKLILRVSDGETAELCSDLLGDREVERMDESLSYGAnnsrdgvTLGRQRRVRPLVLPSEIMNL 365
|
410
....*....|....*.
gi 1003989376 516 gPDMEVFL--YEGIPH 529
Cdd:pfam10412 366 -PRLHGYLkfPDGFPV 380
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
335-463 |
3.82e-16 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 75.33 E-value: 3.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 335 INPVLDKATSCNDFLLTDVrkkKMTIYIGIQPNKLAeSRLIINLFFSQLINLNTKELPKSNPDLKYQCLLLMDEFTSIGK 414
Cdd:cd01127 17 VIPLLDQAARGGSVIITDP---KGELFLVIPDRDDS-FAALRALFFNQLFRALTELASLSPGRLPRRVWFILDEFANLGR 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1003989376 415 VEIIASAVSYMAGYNIRLLPIIQSMSQLDATYGREVSRTIITNHALQIL 463
Cdd:cd01127 93 IPNLPNLLATGRKRGISVVLILQSLAQLEAVYGKDGAQTILGNCNTKLY 141
|
|
| PRK13822 |
PRK13822 |
conjugal transfer coupling protein TraG; Provisional |
92-540 |
2.44e-15 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237522 [Multi-domain] Cd Length: 641 Bit Score: 79.24 E-value: 2.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 92 KRSLHGDARFATGADLAKhgMFKKTGQsIVVGSH-----------------------GGKLVRL------DGQQFVILAA 142
Cdd:PRK13822 156 KRAIHGDADWMKMKEAAK--LFPPDGG-IVIGERyrvdkdsvaalpfrpddrttwgkGGKAPLLtfdgdfGSTHGLVFAG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 143 ptrSG--KGVGVVIPNLLEYGESLVVLDIKQENFDLTSGWRASQGQEIYLFNPFAEDRRthrWNPLSYVSDDPAFRVSDL 220
Cdd:PRK13822 233 ---SGgfKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPTNPGTG---FNVLDWIGRSGGTKEEDI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 221 MSIAAMLYPD--GAEDQK--FWVSQARN---AFMAFTLYLFENWDDERssgfpggagtpTLGAVYRLSSGDGTDLKKYLK 293
Cdd:PRK13822 307 VAVASWILSDskRTESSRddFFRNSAHQlltALLAHVCLSGEYEGKER-----------TLRTLRAILSEPEPSLRARLR 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 294 TL---SERPFLSANArSAFANMlsqADETFASILGTFKEPLNpWI-NPVLDKATSCNDFLLTDVRKKKMTIYIGIqPNKL 369
Cdd:PRK13822 376 DIyenSESDFIRENV-GVFVNM---TEQTFSGVYATASKDTQ-WLsYPNYAALVSGNSFSTSDLAAGNTDVFINI-PLKI 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 370 AES-----RLIINLFFSQLINlntkelpkSNPDLKYQCLLLMDEFTSIGKVEIIASAVSymAG--YNIRLLPIIQSMSQL 442
Cdd:PRK13822 450 LESypglaRVIIGSLLNAMYN--------ADGNVKGRALFLLDEVARLGYMRILETARD--AGrkYGITLMLIYQSIGQL 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003989376 443 DATYGREVSRTIITNHALQILYAPREQQDANDYSDMLGYTTVRKKNVTHAR-----EKTHNFTEERRALMLPQE-LKAMG 516
Cdd:PRK13822 520 REHFGGRGATSWFESASWISFAAIKDLDTADYISERCGEMTVEVDQTSRSSgwsgsSRSRSKQLQRRPLIMPHEiLQSMR 599
|
490 500
....*....|....*....|....
gi 1003989376 517 PDMEVFLYEGIPhPVKCDKIRYYK 540
Cdd:PRK13822 600 ADEQIIFVQGNP-PLRCGRAIYFR 622
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
138-174 |
5.00e-04 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 40.67 E-value: 5.00e-04
10 20 30
....*....|....*....|....*....|....*....
gi 1003989376 138 VILAAPTRSGKGVGVVIPNLLEY--GESLVVLDIKQENF 174
Cdd:cd01127 2 TLVLGTTGSGKTTSIVIPLLDQAarGGSVIITDPKGELF 40
|
|
| PhoR |
pfam11808 |
Phosphate regulon sensor protein PhoR; This family is only found in bacteria. Family members ... |
7-48 |
3.84e-03 |
|
Phosphate regulon sensor protein PhoR; This family is only found in bacteria. Family members include PhoR. A member of the two-component regulatory system PhoR/PhoB involved in the phosphate regulon genes expression. PhoR is the bifunctional histidine autokinase/phospho-PhoB phosphatase that donates a phosphoryl group to PhoB when environmental Pi is limiting and removes the phosphoryl group from phosphorylated PhoB (PhoB-P) when environmental Pi is abundant.
Pssm-ID: 432090 Cd Length: 84 Bit Score: 36.43 E-value: 3.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1003989376 7 YLLIAIITLATLLLGFVFSGYLTLLFLGLDTQLFtWNTYYQY 48
Cdd:pfam11808 5 LWRLALLLLPALLLGLLFGHLAAALLLALLAYLA-WHLYQLL 45
|
|
| |
