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Concise Results
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Full Results
MULTISPECIES: type IV secretion system protein TraC [Enterobacteriaceae]
Protein Classification
type IV secretion system protein TraC ( domain architecture ID 11486812 )
type IV secretion system protein TraC is one of the proteins encoded by the transfer (tra) region of the F pilus assembly Type-IV secretion system for plasmid transfer; is required for the assembly of mature F-pilin subunits into extended F pili
List of domain hits
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
26-869
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1548.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 26 N L SQT w GY P SLVAA LPYR Y YD DINEI F V N AGSA GF IM EA A PL P GANE QVMA ALD D MLR K KLPR QT P VTVIMLA SK C VG E R 105
Cdd:PRK13721 1 V L GEM - SF P QFSRL LPYR D YD QESGL F M N DTTM GF ML EA I PL N GANE SIVE ALD H MLR T KLPR GI P LCIHLMS SK L VG D R 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 106 I DR G VSNDM W K G GM A DHL N K ITRA FWQ R S AL HG -- L ANEREY PL Y LR N YR I F LV Y GQ P L K RA S QTQ rv I DDLVQIRNT IR 183
Cdd:PRK13721 80 I EY G LREFS W S G EQ A ERF N A ITRA YYM R A AL TQ fp L PEGMNL PL T LR H YR V F IS Y CS P S K KK S RAD -- I LEMENLVKI IR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 184 V SL GA A R I DSVN VD VNG F L S A VRE QM N Y R QEQVLTSSGDYNEDEK LN R Q V V DQGIG L D V YPSH L RMT L P E tidargt RLP 263
Cdd:PRK13721 158 A SL QG A S I TTQT VD AQA F I S I VRE MI N H R PDSLYPKRRQLDPYSD LN Y Q C V EDSFD L K V RADY L TLG L R E ------- NGR 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 264 A S AC RI I N MQ LAK T P KRFA LWQ G ADN LQ N IRF P D L G I P CPF M LT W T T E L E E Q T K S QSEA FR K DT DL S KK ANSA YA AL FP G 343
Cdd:PRK13721 231 N S TA RI L N FH LAK N P EIAF LWQ M ADN YS N LLN P E L S I S CPF I LT L T L E V E D Q V K T QSEA NL K YM DL E KK SKTS YA KW FP S 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 344 TKRA A E EW RRT R EQ L NN N EIA L CNTYF N L T L F A PDNN TD A QAC E LAAV N V FRKN EL E MVTIQYQQ MRN W L AGF PF VMQ EG 423
Cdd:PRK13721 311 VEKE A K EW GEL R QR L GS N QSS L VSYFL N I T A F C PDNN ET A LEV E QDIL N S FRKN GF E LISPRFNH MRN F L TCL PF MAG EG 390
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 424 MWE DLK TT G ATL RA K S W N AVS LMP V VA ERQ L SNV G MPL PTYRNQ V AF Y D M F GEENGS TN F N I AV T GTSGAGK SF L T Q GIL 503
Cdd:PRK13721 391 LFK DLK EA G VVQ RA E S F N VAN LMP L VA DNP L TPA G LLA PTYRNQ L AF I D I F FRGMNN TN Y N M AV C GTSGAGK TG L I Q PLI 470
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 504 R D VL NA GGFA W V I DMGD S YK NY C HQA GGVYLDG AK LRFNPFAN VK DI KH SAE G I VRL L T V L ASP TQP LD G V C E AI L QK AV 583
Cdd:PRK13721 471 R S VL DS GGFA V V F DMGD G YK SL C ENM GGVYLDG ET LRFNPFAN IT DI DQ SAE R I RDQ L S V M ASP NGN LD E V H E GL L LQ AV 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 584 MDA W EK K A N K ARIDDV HNY L T N EDVNQAF AD K PTI IA RL A E LAM LLD T Y CTW G PD GEYFN A D T P T L DGET R FA VLEL LS L 663
Cdd:PRK13721 551 RAS W LA K K N R ARIDDV VDF L K N ARDSEQY AD S PTI RS RL D E MIV LLD Q Y TAN G TY GEYFN S D E P S L RDDA R MV VLEL GG L 630
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 664 ED K P K LL S A IL FSLI LA I QEK MY HS PR D LKK VCI IDE A WRLL GGS N PHAAR FIE T GYRT V RRH R GA F ITITQ G I K DF SAS 743
Cdd:PRK13721 631 ED R P S LL V A VM FSLI IY I ENR MY RT PR N LKK LNV IDE G WRLL DFK N HKVGE FIE K GYRT A RRH T GA Y ITITQ N I V DF DSD 710
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 744 K E --- A E AAW N NSS T KI T L L Q D AK A F KQ Y LADN PDQFS DM E KEV I R GF QP A LQTGY SS L L INAGEY SS F HRLFVDP VT RA 820
Cdd:PRK13721 711 K A ssa A R AAW G NSS Y KI I L K Q S AK E F AK Y NQLY PDQFS PL E RDM I G GF GA A KDQWF SS F L LQVENH SS W HRLFVDP LS RA 790
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1004674747 821 M F SS R G E DF A F M Q KLQ K e A G ATAE EA AYL LA E KKFG S E LRE LE E W VKAA 869
Cdd:PRK13721 791 M Y SS D G P DF E F V Q QKR K - E G LSIH EA VWQ LA W KKFG P E MAS LE A W LEEH 838
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
26-869
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1548.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 26 N L SQT w GY P SLVAA LPYR Y YD DINEI F V N AGSA GF IM EA A PL P GANE QVMA ALD D MLR K KLPR QT P VTVIMLA SK C VG E R 105
Cdd:PRK13721 1 V L GEM - SF P QFSRL LPYR D YD QESGL F M N DTTM GF ML EA I PL N GANE SIVE ALD H MLR T KLPR GI P LCIHLMS SK L VG D R 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 106 I DR G VSNDM W K G GM A DHL N K ITRA FWQ R S AL HG -- L ANEREY PL Y LR N YR I F LV Y GQ P L K RA S QTQ rv I DDLVQIRNT IR 183
Cdd:PRK13721 80 I EY G LREFS W S G EQ A ERF N A ITRA YYM R A AL TQ fp L PEGMNL PL T LR H YR V F IS Y CS P S K KK S RAD -- I LEMENLVKI IR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 184 V SL GA A R I DSVN VD VNG F L S A VRE QM N Y R QEQVLTSSGDYNEDEK LN R Q V V DQGIG L D V YPSH L RMT L P E tidargt RLP 263
Cdd:PRK13721 158 A SL QG A S I TTQT VD AQA F I S I VRE MI N H R PDSLYPKRRQLDPYSD LN Y Q C V EDSFD L K V RADY L TLG L R E ------- NGR 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 264 A S AC RI I N MQ LAK T P KRFA LWQ G ADN LQ N IRF P D L G I P CPF M LT W T T E L E E Q T K S QSEA FR K DT DL S KK ANSA YA AL FP G 343
Cdd:PRK13721 231 N S TA RI L N FH LAK N P EIAF LWQ M ADN YS N LLN P E L S I S CPF I LT L T L E V E D Q V K T QSEA NL K YM DL E KK SKTS YA KW FP S 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 344 TKRA A E EW RRT R EQ L NN N EIA L CNTYF N L T L F A PDNN TD A QAC E LAAV N V FRKN EL E MVTIQYQQ MRN W L AGF PF VMQ EG 423
Cdd:PRK13721 311 VEKE A K EW GEL R QR L GS N QSS L VSYFL N I T A F C PDNN ET A LEV E QDIL N S FRKN GF E LISPRFNH MRN F L TCL PF MAG EG 390
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 424 MWE DLK TT G ATL RA K S W N AVS LMP V VA ERQ L SNV G MPL PTYRNQ V AF Y D M F GEENGS TN F N I AV T GTSGAGK SF L T Q GIL 503
Cdd:PRK13721 391 LFK DLK EA G VVQ RA E S F N VAN LMP L VA DNP L TPA G LLA PTYRNQ L AF I D I F FRGMNN TN Y N M AV C GTSGAGK TG L I Q PLI 470
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 504 R D VL NA GGFA W V I DMGD S YK NY C HQA GGVYLDG AK LRFNPFAN VK DI KH SAE G I VRL L T V L ASP TQP LD G V C E AI L QK AV 583
Cdd:PRK13721 471 R S VL DS GGFA V V F DMGD G YK SL C ENM GGVYLDG ET LRFNPFAN IT DI DQ SAE R I RDQ L S V M ASP NGN LD E V H E GL L LQ AV 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 584 MDA W EK K A N K ARIDDV HNY L T N EDVNQAF AD K PTI IA RL A E LAM LLD T Y CTW G PD GEYFN A D T P T L DGET R FA VLEL LS L 663
Cdd:PRK13721 551 RAS W LA K K N R ARIDDV VDF L K N ARDSEQY AD S PTI RS RL D E MIV LLD Q Y TAN G TY GEYFN S D E P S L RDDA R MV VLEL GG L 630
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 664 ED K P K LL S A IL FSLI LA I QEK MY HS PR D LKK VCI IDE A WRLL GGS N PHAAR FIE T GYRT V RRH R GA F ITITQ G I K DF SAS 743
Cdd:PRK13721 631 ED R P S LL V A VM FSLI IY I ENR MY RT PR N LKK LNV IDE G WRLL DFK N HKVGE FIE K GYRT A RRH T GA Y ITITQ N I V DF DSD 710
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 744 K E --- A E AAW N NSS T KI T L L Q D AK A F KQ Y LADN PDQFS DM E KEV I R GF QP A LQTGY SS L L INAGEY SS F HRLFVDP VT RA 820
Cdd:PRK13721 711 K A ssa A R AAW G NSS Y KI I L K Q S AK E F AK Y NQLY PDQFS PL E RDM I G GF GA A KDQWF SS F L LQVENH SS W HRLFVDP LS RA 790
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1004674747 821 M F SS R G E DF A F M Q KLQ K e A G ATAE EA AYL LA E KKFG S E LRE LE E W VKAA 869
Cdd:PRK13721 791 M Y SS D G P DF E F V Q QKR K - E G LSIH EA VWQ LA W KKFG P E MAS LE A W LEEH 838
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
40-837
0e+00
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 710.63
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 40 LPYR Y YD DINE IF V N AG S A GF IM E AA PL P GA N E QVMAA L DDM LR KK LP RQ T PVT V IMLA S KCV G ERI DR GVSNDMWK GG M 119
Cdd:TIGR02746 2 LPYR A YD EESG IF M N RH S M GF GL E LT PL S GA D E SLVES L SSL LR TD LP EG T DIQ V LLWG S PQI G PFL DR NEEQFSQN GG I 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 120 ADH L NKITRAFWQRS A LH G L an EREYPLY LR NY R I FL VYGQ P lk RA S QTQR VI DD L VQI R NT I RVS L GA A RIDSVN VD VN 199
Cdd:TIGR02746 82 LEK L ARNRVKYYLNA A QK G F -- FKNSGVT LR DF R L FL SVSI P -- FK S PNED VI QE L RSL R ER I EST L RS A GFGCRR VD AE 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 200 GF LS A VRE QM N YRQEQVLTSSGD Y NEDEK L NR Q V VD QGIG L D V YPSH L rmtlpe TI D a RGTRLPASAC RI INMQLAKT P K 279
Cdd:TIGR02746 158 DL LS L VRE ML N PDPDSIHPWPIS Y DPNQL L RD Q I VD PDTD L E V HEGG L ------ EV D - HEDNQGEVKT RI RVFSIKRF P E 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 280 R F A LWQ GADNLQNIRF P D L G I P CPF M L TW T TEL E E Q T K SQSE A FR K DT DL S K K A N S AY A ALF P GTKRAAE E WRRT RE QLN 359
Cdd:TIGR02746 231 E F T LWQ TGNLIGDLLN P S L Q I T CPF L L SF T VRV E D Q V K KKAK A TA K AK DL N K Q A K S SM A KWV P SLEKKLK E IKYL RE AIA 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 360 NNEIA L CNT Y F N LT LF - A PDN NTDAQA cel AA VNV FRKN ELEMVTIQYQ Q MRNW LA GF PF VMQ EG MW EDLK TT G ATLRAK 438
Cdd:TIGR02746 311 SGGDS L VSM Y Y N VL LF t N PDN LRRDVE --- AA KSS FRKN GFDLAEDKRI Q LQAF LA AL PF NPT EG LF EDLK KA G RVRTLS 387
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 439 S W NAV S L M P VV A E - RQLSNV G MP LPT Y R N Q VAFY D M F ge ENG STN F NIAV T G T SGAGKSF LT Q GILR D V L NA GG FA WVID 517
Cdd:TIGR02746 388 S A NAV N L L P LI A D w KGTKGS G LL LPT R R G Q LSAF D P F -- DSD STN Y NIAV V G G SGAGKSF FM Q ELIV D N L SR GG KV WVID 465
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 518 M G D SYK NY C HQA GG V Y LDGAK --- LRF NPF A -- NV KD I KHSAEG I VR L LTVL ASP TQP L DGVCEAI L QK A VMD AW EKKA N 592
Cdd:TIGR02746 466 V G R SYK KL C EML GG T Y IEFSP esn ICL NPF T gn NV TE I DDEIDQ I TA L IALM ASP EGG L SDEQRST L EE A ILA AW KEYG N 545
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 593 K A R I D DV HNY L tned VNQAFADKPT iia R LAE L AML L DT Y CTW G PD G E YFN AD t PT LD GET RF A VLEL LS LED K P K L LSA 672
Cdd:TIGR02746 546 E A T I T DV QDA L ---- QQLEDDENDP --- R IKD L GKM L NP Y TSH G VY G R YFN GP - NN LD FSN RF V VLEL EE LED R P D L QAV 617
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 673 I LFSL ILA I QEK MY HS PR DLK K V CIIDEAW R LL G G S NP H AA R FIETGYR TV R RHR GAFITITQGI K DF SA S K EA E AA WN N 752
Cdd:TIGR02746 618 V LFSL MVR I TGE MY LT PR KRR K I CIIDEAW S LL D G A NP Q AA D FIETGYR RA R KYG GAFITITQGI E DF YS S P EA R AA YA N 697
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 753 S ST KI T L L Q D A KAFKQYL A D NP DQ FS DM EK EV I RGF q PALQTGY S S LLI NA GE Y SS F HRLFVDP VT R AM FS SR G ED F AFM 832
Cdd:TIGR02746 698 S DW KI I L R Q S A ESIAKLK A E NP FT FS PF EK RL I KSL - RTAKGAF S E LLI RS GE G SS V HRLFVDP FS R VL FS TD G PE F EEV 776
....*
gi 1004674747 833 QK L QK 837
Cdd:TIGR02746 777 EE L RE 781
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
298-837
4.72e-111
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 351.17
E-value: 4.72e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 298 L GI PC P F ML T WTTELEEQTKSQSEAF RK DTD L SK K AN S AY A ALFPGTKRA AE EWRRTREQ L NNNEIA L CNTYFN LT L FA P 377
Cdd:COG3451 31 L QL PC E F IV T QSFTPLDKDEALKKLK RK RRR L ES K RK S EQ A LVDDDAESQ AE DAEEALDE L QSGGER L GEVHLT LT V FA D 110
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 378 D NNTDAQ A CE l AAVNVFRKNELEM V TIQYQ Q MRNW L AGF P FVMQE gmwe D L KTTGA T lrak SW N AVS L M P VVAERQLSNV 457
Cdd:COG3451 111 D LEELEE A VR - EVESALQSAGFTL V RETLN Q EEAF L SSL P GNFDY ---- R L RRRLL T ---- TS N LAA L F P FHSFELGDPW 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 458 G - MP L P T YRNQVA F Y D MF gee N G ST N F N IAVT G T SG A GKSFL TQGI L RDV L NA G GFAWVI D M G D SY KNYCHQA GG V Y L D - 535
Cdd:COG3451 182 G i YL L N T RSGTPV F F D FH --- D G LD N G N TLIL G P SG S GKSFL LKLL L LQL L RY G ARIVIF D P G G SY EILVRAL GG T Y I D l 258
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 536 -- G AKLRF NPF A n VK D IKHSAEGIVR LL TV L AS - PTQ PL DGVCE A ILQK AV MDAWEKKANKA R -- ID D VHNY L TNEDVNQ 610
Cdd:COG3451 259 sp G SPTGL NPF D - LE D TEEKRDFLLE LL EL L LG r EGE PL TPEER A AIDR AV RALYRRADPEE R tt LS D LYEL L KEQPEAK 337
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 611 afadkptiiarla E LA ML L DT Y CTW G PD G EY F NAD T PTLDGET RF A V LE L LS L E D K P K L LSAI L FS L ILA I QEKMYHSPR 690
Cdd:COG3451 338 ------------- D LA AR L EP Y TKG G SY G WL F DGP T NLDLSDA RF V V FD L TE L L D N P E L RPPV L LY L LHR I WNRLRKNND 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 691 DLKKVCI IDEAW R LL gg S NP HA A R F I E TGYR T V R RHR GA F I TI TQ GIK DF SA S KE AEA AWN NS S TKI T L L Q DAKAFKQ Y L 770
Cdd:COG3451 405 GRPTLIV IDEAW L LL -- D NP AF A E F L E EWLK T L R KYN GA V I FA TQ SVE DF LS S PI AEA IIE NS A TKI L L P Q PKADIED Y A 482
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1004674747 771 adnp DQF -- S DM E K E V IR G fqpa LQT G YSSL LI NA G EY S SFH RL FVD P VTR A MF S SRG E DF A FMQK L QK 837
Cdd:COG3451 483 ---- ELL gl S ER E L E L IR S ---- AGR G KRDF LI KQ G NG S VVF RL DLS P EEL A LL S TKP E EV A ILDE L RA 543
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
34-262
3.77e-33
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 127.78
E-value: 3.77e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 34 PS LVAA LPY RY YD DINEI F V N A - GS A GF IM E AA PL P GA N E Q V MAA L DDM L RKK LP RQ TPV TVIML AS KCV G ERI DR gvsn 112
Cdd:pfam11130 1 PS FSDL LPY VA YD PETGL F L N E d GS V GF VF E LS PL G GA D E S V RDT L ESL L SDD LP DG TPV QFLLF AS PDI G PYL DR ---- 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 113 dm WK ---- G GMAD HL NK I T -- R AFWQR S ALH G LANER e YPLY LR NY R IF L VYGQ P L K ra SQTQRV I DD L VQI R NTIRV SL 186
Cdd:pfam11130 77 -- LR dyrl G EQGG HL RA I A rp R GLFLD S GVT G SLSAD - WRGQ LR RF R LV L SRKV P G K -- ADLPTP I EA L NEL R DRLEA SL 151
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1004674747 187 GA A RIDSVNV D VNGFLSAV R EQM N YRQEQVLTSSG DY NE D EKLNR Q VV D QGIG LDV YPSH L RMTLPETIDA R GTR L 262
Cdd:pfam11130 152 RS A GLAARRL D PDDLIAWL R RWL N PDPSASWDPPA DY DP D KDIAE Q IL D SDPR LDV EAGR L YFDGEPHRAV R VLS L 227
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
26-869
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1548.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 26 N L SQT w GY P SLVAA LPYR Y YD DINEI F V N AGSA GF IM EA A PL P GANE QVMA ALD D MLR K KLPR QT P VTVIMLA SK C VG E R 105
Cdd:PRK13721 1 V L GEM - SF P QFSRL LPYR D YD QESGL F M N DTTM GF ML EA I PL N GANE SIVE ALD H MLR T KLPR GI P LCIHLMS SK L VG D R 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 106 I DR G VSNDM W K G GM A DHL N K ITRA FWQ R S AL HG -- L ANEREY PL Y LR N YR I F LV Y GQ P L K RA S QTQ rv I DDLVQIRNT IR 183
Cdd:PRK13721 80 I EY G LREFS W S G EQ A ERF N A ITRA YYM R A AL TQ fp L PEGMNL PL T LR H YR V F IS Y CS P S K KK S RAD -- I LEMENLVKI IR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 184 V SL GA A R I DSVN VD VNG F L S A VRE QM N Y R QEQVLTSSGDYNEDEK LN R Q V V DQGIG L D V YPSH L RMT L P E tidargt RLP 263
Cdd:PRK13721 158 A SL QG A S I TTQT VD AQA F I S I VRE MI N H R PDSLYPKRRQLDPYSD LN Y Q C V EDSFD L K V RADY L TLG L R E ------- NGR 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 264 A S AC RI I N MQ LAK T P KRFA LWQ G ADN LQ N IRF P D L G I P CPF M LT W T T E L E E Q T K S QSEA FR K DT DL S KK ANSA YA AL FP G 343
Cdd:PRK13721 231 N S TA RI L N FH LAK N P EIAF LWQ M ADN YS N LLN P E L S I S CPF I LT L T L E V E D Q V K T QSEA NL K YM DL E KK SKTS YA KW FP S 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 344 TKRA A E EW RRT R EQ L NN N EIA L CNTYF N L T L F A PDNN TD A QAC E LAAV N V FRKN EL E MVTIQYQQ MRN W L AGF PF VMQ EG 423
Cdd:PRK13721 311 VEKE A K EW GEL R QR L GS N QSS L VSYFL N I T A F C PDNN ET A LEV E QDIL N S FRKN GF E LISPRFNH MRN F L TCL PF MAG EG 390
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 424 MWE DLK TT G ATL RA K S W N AVS LMP V VA ERQ L SNV G MPL PTYRNQ V AF Y D M F GEENGS TN F N I AV T GTSGAGK SF L T Q GIL 503
Cdd:PRK13721 391 LFK DLK EA G VVQ RA E S F N VAN LMP L VA DNP L TPA G LLA PTYRNQ L AF I D I F FRGMNN TN Y N M AV C GTSGAGK TG L I Q PLI 470
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 504 R D VL NA GGFA W V I DMGD S YK NY C HQA GGVYLDG AK LRFNPFAN VK DI KH SAE G I VRL L T V L ASP TQP LD G V C E AI L QK AV 583
Cdd:PRK13721 471 R S VL DS GGFA V V F DMGD G YK SL C ENM GGVYLDG ET LRFNPFAN IT DI DQ SAE R I RDQ L S V M ASP NGN LD E V H E GL L LQ AV 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 584 MDA W EK K A N K ARIDDV HNY L T N EDVNQAF AD K PTI IA RL A E LAM LLD T Y CTW G PD GEYFN A D T P T L DGET R FA VLEL LS L 663
Cdd:PRK13721 551 RAS W LA K K N R ARIDDV VDF L K N ARDSEQY AD S PTI RS RL D E MIV LLD Q Y TAN G TY GEYFN S D E P S L RDDA R MV VLEL GG L 630
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 664 ED K P K LL S A IL FSLI LA I QEK MY HS PR D LKK VCI IDE A WRLL GGS N PHAAR FIE T GYRT V RRH R GA F ITITQ G I K DF SAS 743
Cdd:PRK13721 631 ED R P S LL V A VM FSLI IY I ENR MY RT PR N LKK LNV IDE G WRLL DFK N HKVGE FIE K GYRT A RRH T GA Y ITITQ N I V DF DSD 710
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 744 K E --- A E AAW N NSS T KI T L L Q D AK A F KQ Y LADN PDQFS DM E KEV I R GF QP A LQTGY SS L L INAGEY SS F HRLFVDP VT RA 820
Cdd:PRK13721 711 K A ssa A R AAW G NSS Y KI I L K Q S AK E F AK Y NQLY PDQFS PL E RDM I G GF GA A KDQWF SS F L LQVENH SS W HRLFVDP LS RA 790
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1004674747 821 M F SS R G E DF A F M Q KLQ K e A G ATAE EA AYL LA E KKFG S E LRE LE E W VKAA 869
Cdd:PRK13721 791 M Y SS D G P DF E F V Q QKR K - E G LSIH EA VWQ LA W KKFG P E MAS LE A W LEEH 838
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
40-837
0e+00
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 710.63
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 40 LPYR Y YD DINE IF V N AG S A GF IM E AA PL P GA N E QVMAA L DDM LR KK LP RQ T PVT V IMLA S KCV G ERI DR GVSNDMWK GG M 119
Cdd:TIGR02746 2 LPYR A YD EESG IF M N RH S M GF GL E LT PL S GA D E SLVES L SSL LR TD LP EG T DIQ V LLWG S PQI G PFL DR NEEQFSQN GG I 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 120 ADH L NKITRAFWQRS A LH G L an EREYPLY LR NY R I FL VYGQ P lk RA S QTQR VI DD L VQI R NT I RVS L GA A RIDSVN VD VN 199
Cdd:TIGR02746 82 LEK L ARNRVKYYLNA A QK G F -- FKNSGVT LR DF R L FL SVSI P -- FK S PNED VI QE L RSL R ER I EST L RS A GFGCRR VD AE 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 200 GF LS A VRE QM N YRQEQVLTSSGD Y NEDEK L NR Q V VD QGIG L D V YPSH L rmtlpe TI D a RGTRLPASAC RI INMQLAKT P K 279
Cdd:TIGR02746 158 DL LS L VRE ML N PDPDSIHPWPIS Y DPNQL L RD Q I VD PDTD L E V HEGG L ------ EV D - HEDNQGEVKT RI RVFSIKRF P E 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 280 R F A LWQ GADNLQNIRF P D L G I P CPF M L TW T TEL E E Q T K SQSE A FR K DT DL S K K A N S AY A ALF P GTKRAAE E WRRT RE QLN 359
Cdd:TIGR02746 231 E F T LWQ TGNLIGDLLN P S L Q I T CPF L L SF T VRV E D Q V K KKAK A TA K AK DL N K Q A K S SM A KWV P SLEKKLK E IKYL RE AIA 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 360 NNEIA L CNT Y F N LT LF - A PDN NTDAQA cel AA VNV FRKN ELEMVTIQYQ Q MRNW LA GF PF VMQ EG MW EDLK TT G ATLRAK 438
Cdd:TIGR02746 311 SGGDS L VSM Y Y N VL LF t N PDN LRRDVE --- AA KSS FRKN GFDLAEDKRI Q LQAF LA AL PF NPT EG LF EDLK KA G RVRTLS 387
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 439 S W NAV S L M P VV A E - RQLSNV G MP LPT Y R N Q VAFY D M F ge ENG STN F NIAV T G T SGAGKSF LT Q GILR D V L NA GG FA WVID 517
Cdd:TIGR02746 388 S A NAV N L L P LI A D w KGTKGS G LL LPT R R G Q LSAF D P F -- DSD STN Y NIAV V G G SGAGKSF FM Q ELIV D N L SR GG KV WVID 465
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 518 M G D SYK NY C HQA GG V Y LDGAK --- LRF NPF A -- NV KD I KHSAEG I VR L LTVL ASP TQP L DGVCEAI L QK A VMD AW EKKA N 592
Cdd:TIGR02746 466 V G R SYK KL C EML GG T Y IEFSP esn ICL NPF T gn NV TE I DDEIDQ I TA L IALM ASP EGG L SDEQRST L EE A ILA AW KEYG N 545
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 593 K A R I D DV HNY L tned VNQAFADKPT iia R LAE L AML L DT Y CTW G PD G E YFN AD t PT LD GET RF A VLEL LS LED K P K L LSA 672
Cdd:TIGR02746 546 E A T I T DV QDA L ---- QQLEDDENDP --- R IKD L GKM L NP Y TSH G VY G R YFN GP - NN LD FSN RF V VLEL EE LED R P D L QAV 617
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 673 I LFSL ILA I QEK MY HS PR DLK K V CIIDEAW R LL G G S NP H AA R FIETGYR TV R RHR GAFITITQGI K DF SA S K EA E AA WN N 752
Cdd:TIGR02746 618 V LFSL MVR I TGE MY LT PR KRR K I CIIDEAW S LL D G A NP Q AA D FIETGYR RA R KYG GAFITITQGI E DF YS S P EA R AA YA N 697
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 753 S ST KI T L L Q D A KAFKQYL A D NP DQ FS DM EK EV I RGF q PALQTGY S S LLI NA GE Y SS F HRLFVDP VT R AM FS SR G ED F AFM 832
Cdd:TIGR02746 698 S DW KI I L R Q S A ESIAKLK A E NP FT FS PF EK RL I KSL - RTAKGAF S E LLI RS GE G SS V HRLFVDP FS R VL FS TD G PE F EEV 776
....*
gi 1004674747 833 QK L QK 837
Cdd:TIGR02746 777 EE L RE 781
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
298-837
4.72e-111
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 351.17
E-value: 4.72e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 298 L GI PC P F ML T WTTELEEQTKSQSEAF RK DTD L SK K AN S AY A ALFPGTKRA AE EWRRTREQ L NNNEIA L CNTYFN LT L FA P 377
Cdd:COG3451 31 L QL PC E F IV T QSFTPLDKDEALKKLK RK RRR L ES K RK S EQ A LVDDDAESQ AE DAEEALDE L QSGGER L GEVHLT LT V FA D 110
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 378 D NNTDAQ A CE l AAVNVFRKNELEM V TIQYQ Q MRNW L AGF P FVMQE gmwe D L KTTGA T lrak SW N AVS L M P VVAERQLSNV 457
Cdd:COG3451 111 D LEELEE A VR - EVESALQSAGFTL V RETLN Q EEAF L SSL P GNFDY ---- R L RRRLL T ---- TS N LAA L F P FHSFELGDPW 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 458 G - MP L P T YRNQVA F Y D MF gee N G ST N F N IAVT G T SG A GKSFL TQGI L RDV L NA G GFAWVI D M G D SY KNYCHQA GG V Y L D - 535
Cdd:COG3451 182 G i YL L N T RSGTPV F F D FH --- D G LD N G N TLIL G P SG S GKSFL LKLL L LQL L RY G ARIVIF D P G G SY EILVRAL GG T Y I D l 258
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 536 -- G AKLRF NPF A n VK D IKHSAEGIVR LL TV L AS - PTQ PL DGVCE A ILQK AV MDAWEKKANKA R -- ID D VHNY L TNEDVNQ 610
Cdd:COG3451 259 sp G SPTGL NPF D - LE D TEEKRDFLLE LL EL L LG r EGE PL TPEER A AIDR AV RALYRRADPEE R tt LS D LYEL L KEQPEAK 337
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 611 afadkptiiarla E LA ML L DT Y CTW G PD G EY F NAD T PTLDGET RF A V LE L LS L E D K P K L LSAI L FS L ILA I QEKMYHSPR 690
Cdd:COG3451 338 ------------- D LA AR L EP Y TKG G SY G WL F DGP T NLDLSDA RF V V FD L TE L L D N P E L RPPV L LY L LHR I WNRLRKNND 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 691 DLKKVCI IDEAW R LL gg S NP HA A R F I E TGYR T V R RHR GA F I TI TQ GIK DF SA S KE AEA AWN NS S TKI T L L Q DAKAFKQ Y L 770
Cdd:COG3451 405 GRPTLIV IDEAW L LL -- D NP AF A E F L E EWLK T L R KYN GA V I FA TQ SVE DF LS S PI AEA IIE NS A TKI L L P Q PKADIED Y A 482
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1004674747 771 adnp DQF -- S DM E K E V IR G fqpa LQT G YSSL LI NA G EY S SFH RL FVD P VTR A MF S SRG E DF A FMQK L QK 837
Cdd:COG3451 483 ---- ELL gl S ER E L E L IR S ---- AGR G KRDF LI KQ G NG S VVF RL DLS P EEL A LL S TKP E EV A ILDE L RA 543
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
34-262
3.77e-33
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 127.78
E-value: 3.77e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 34 PS LVAA LPY RY YD DINEI F V N A - GS A GF IM E AA PL P GA N E Q V MAA L DDM L RKK LP RQ TPV TVIML AS KCV G ERI DR gvsn 112
Cdd:pfam11130 1 PS FSDL LPY VA YD PETGL F L N E d GS V GF VF E LS PL G GA D E S V RDT L ESL L SDD LP DG TPV QFLLF AS PDI G PYL DR ---- 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 113 dm WK ---- G GMAD HL NK I T -- R AFWQR S ALH G LANER e YPLY LR NY R IF L VYGQ P L K ra SQTQRV I DD L VQI R NTIRV SL 186
Cdd:pfam11130 77 -- LR dyrl G EQGG HL RA I A rp R GLFLD S GVT G SLSAD - WRGQ LR RF R LV L SRKV P G K -- ADLPTP I EA L NEL R DRLEA SL 151
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1004674747 187 GA A RIDSVNV D VNGFLSAV R EQM N YRQEQVLTSSG DY NE D EKLNR Q VV D QGIG LDV YPSH L RMTLPETIDA R GTR L 262
Cdd:pfam11130 152 RS A GLAARRL D PDDLIAWL R RWL N PDPSASWDPPA DY DP D KDIAE Q IL D SDPR LDV EAGR L YFDGEPHRAV R VLS L 227
P-loop_TraG
pfam19044 TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation ...
481-761
1.81e-18
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation protein.
Pssm-ID: 436917 [Multi-domain]
Cd Length: 413
Bit Score: 88.73
E-value: 1.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 481 TN F N IAVT G T SG A GKSF L T QGIL R DVLNA G GFAWVI D M G D SYK NY C HQA GG V Y L --- DGAKL RFNPF ---- AN V K D IK h S 553
Cdd:pfam19044 28 TN R N KFIL G P SG S GKSF F T NHMV R SYYEQ G AHVVLV D V G H SYK GL C ELV GG Y Y F tys EENPI RFNPF yigd GD V L D TE - K 106
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 554 A E G I VR LL TV L ----- A S P T QP ldgvc E AI - L QK A VMDAW E KKANKAR I ------------ D DVHNY L TNED V NQAFA D k 615
Cdd:pfam19044 107 K E S I KT LL LA L wkkdd E S F T RS ----- E YV a L SN A LTLYY E HLEKDPD I fpcfntfyeflr D EYLKV L EEDK V KEKDF D - 180
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 616 ptiiar LAELAML L DT Y CT wgp D GE Y --- F NA DT p T LD - GET RF A V L EL LSLE D K P kllsa ILF SLI - LA I Q E ---- KM y 686
Cdd:pfam19044 181 ------ IDNFLYV L RP Y YK --- G GE F dyl L NA TE - N LD l LNE RF I V F EL DNIK D H P ----- ILF PVV t II I M E vfis KM - 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 687 hsp R D LK --- K VCI I D EAW RLLGGSN ph A A RF I ETGYR TVR RHR G AF I TI TQ GIK D FSA S --- K ea E A AW NNS ST KI T L L 760
Cdd:pfam19044 245 --- R K LK gir K MIL I E EAW KAIAKEG -- M A EY I KYLFK TVR KFF G EA I VV TQ EVD D IIS S piv K -- D A II NNS DC KI L L D 317
.
gi 1004674747 761 Q 761
Cdd:pfam19044 318 Q 318
HerA
COG0433 Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ...
485-796
1.33e-12
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain]
Cd Length: 388
Bit Score: 70.41
E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 485 I AVT G TS G A GKS FLT Q GI L RDVLN AG GFAW V I D MGDS Y KNYCHQAG ----- GV Y -- LD G AK L RF NP F anvk D IKHS A EGI 557
Cdd:COG0433 50 I LIL G AT G S GKS NTL Q VL L EELSR AG VPVL V F D PHGE Y SGLAEPGA eradv GV F dp GA G RP L PI NP W ---- D LFAT A SEL 125
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 558 VR LL TVLASPTQPL dgvc EAI L QK A VMD A WE K KANKARID D VHNY L TNEDVNQAF --- ADKPTII A R L AE L AM L LDTYCT 634
Cdd:COG0433 126 GP LL LSRLDLNDTQ ---- RGV L RE A LRL A DD K GLLLLDLK D LIAL L EEGEELGEE ygn VSAASAG A L L RR L ES L ESADGL 201
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 635 W G PD G EYFNA dtp T L DGET R FA V LE L LS L ED kp K L L S AILFS L ILAIQ E KMYHSPRDLKK ---- V CI IDEA WR L LGGSNP 710
Cdd:COG0433 202 F G EP G LDLED --- L L RTDG R VT V ID L SG L PE -- E L Q S TFVLW L LRELF E ARPEVGDADDR klpl V LV IDEA HL L APAAPS 276
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 711 HAARFI E tgy R TV R -- R HR G AFIT - I TQ GIK D FS askea E AAWNNSS T K I T L LQDAKAFKQYLADNPDQF S DMEK E VI rg 787
Cdd:COG0433 277 ALLEIL E --- R IA R eg R KF G VGLI l A TQ RPS D ID ----- E DVLSQLG T Q I I L RLFNPRDQKAVKAAAETL S EDLL E RL -- 346
....*....
gi 1004674747 788 fq P A L Q TG Y 796
Cdd:COG0433 347 -- P S L G TG E 353
DUF5934
pfam19357 Family of unknown function (DUF5934); This presumed domain found in type IV secretion system ...
295-462
9.62e-10
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system proteins is functionally uncharacterized. This domain family is found in proteobacteria, and is approximately 170 amino acids in length. The family is found in association with pfam11130. There are two conserved sequence motifs: GWDL and QGEY.
Pssm-ID: 437189 [Multi-domain]
Cd Length: 172
Bit Score: 58.57
E-value: 9.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 295 FPD L GI PCP FMLTWTTELEE Q TKSQ S E A FR K DTDLSKK A N S AY A ALF P GT K RAAE EW RRTREQ L NNNE i A L CNTYFNL T L 374
Cdd:pfam19357 6 NDK L RL PCP VATSLCLVYPD Q EAAS S K A GY K FMRTTSL A D S KS A RFL P QL K EQSA EW QHVQDE L RQGR - K L VRAFYSV T A 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 375 F A P DNNT D aq A C E LAAVN V FRKNELEMVTIQ Y Q Q MRNW LA GF P FVMQE G MWE DL KTTGATLRAKSWN A VSLM P VVA E R ql 454
Cdd:pfam19357 85 F S P KGKG D -- A H E RTLKS V YKAAGWDLIDER Y L Q IMGL LA AM P LTLAD G LAS DL ERMKRFRTMLTTT A ANIA P LQG E Y -- 160
....*...
gi 1004674747 455 sn V G M P L P 462
Cdd:pfam19357 161 -- L G G P I P 166
AAA_10
pfam12846 AAA-like domain; This family of domains contain a P-loop motif that is characteriztic of the ...
480-781
6.33e-07
AAA-like domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins, including VirB4 components of the Type IV secretory pathway and conjugal transfer protein TrbE. This entry includes the arcaheal Vir4/HerA homolog CedB, a membrane-bound protein that is highly induced upon UV treatment and essential for DNA transfer between Sulfolobus cells.
Pssm-ID: 315512 [Multi-domain]
Cd Length: 362
Bit Score: 52.40
E-value: 6.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 480 STNFNI A VT G TS G A GKS F L TQGILRDVLNA GG F A WV ID ---- M G DSYKN --- YC H QAGG V Y LD G --- AKLRFN P FANVKD 549
Cdd:pfam12846 19 TNAPHS A II G DL G G GKS V L NKTLFYYIVLL GG K A LY ID pkke R G QWKET lpe IA H EINF V T LD S ete NHGLLD P IVLLPR 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 550 I K h S AE GIVRLLTVLASPTQPL D GVCEAI L Q KAV MDAW E K K an KARIDD V HNY L TN ED -- VNQAF AD KPTIIARLAELAM 627
Cdd:pfam12846 99 E K - E AE STAIDILTNLTGDSSR D DEKFPA L R KAV EAVT E G K -- QRGLLA V IEE L RK ED pk AARNI AD HLESVVDGSLAHL 175
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 628 L LD tyctwgp DG EYF NA DTP tldg E TRFAV LE L -- L S L E DK P --------- K LLS AILFSL I LAIQEKMYH S P R DLK KV C 696
Cdd:pfam12846 176 L FS ------- DG RVE NA ISF ---- E KQVTI LE V ed L D L P DK A erferltte Q LLS VSMMFV I GTFAREFGS S D R KEF KV V 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004674747 697 II DEAW RLL gg S NPHAARFIETGY R TV R RHRG A FITI TQ GIK D FSASKEA eaaw NN SST K I ---- T LLQDA K AFKQY L -- 770
Cdd:pfam12846 245 FF DEAW IFT -- S SAQGKTLLKELV R IG R SYNA A VYLV TQ SAD D VLDEGLK ---- NN IGY K F afrs T DKNEI K KVLEF L gl 318
330
....*....|....*
gi 1004674747 771 ---- AD N PDQFSDM E 781
Cdd:pfam12846 319 dvnd EN N QKRLRSL E 333
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
