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Conserved domains on  [gi|1005574939|ref|WP_061667241|]
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MULTISPECIES: DUF4879 domain-containing protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4879 super family cl24708
Domain of unknown function (DUF4879); family of short proteins of bacterial proteins of phage ...
 30-140 5.67e-24

Domain of unknown function (DUF4879); family of short proteins of bacterial proteins of phage origin, exemplified by protein SPBc2p013 from Bacillus phage SPBc2, found in various Bacillus and Pseudomonas species. Structure show unexpected structural similarity to greek key beta barrels from the E-set domain, especially to domains involved in carbohydrate and protein- protein binding. However functional consequences of this similarity are not confirmed.


The actual alignment was detected with superfamily member pfam16219:

Pssm-ID: 435226  Cd Length: 125  Bit Score: 89.50  E-value: 5.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005574939  30 PAAPLSSLNVVQVESEQ--GGVEAINPNSFSTTRNHGGSYLYIYTKEIGYGQNPIAKMNGSAVKSIGSSVI--------- 98
Cdd:pfam16219   2 PAPPLTYVQVYGVCSSNsgGAWEYITSGQTSTPCNHGGSQLRVAVLEIGYGKNGVAWLNGGQSKNYDSDPIcgvmgnyhs 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1005574939  99 --GGNPIVGWYYKWDASGHQQGTFEYQKTSINFPFNTMRTSLYI 140
Cdd:pfam16219  82 cpAGKIVVGWLKYYNADGYQGGSFSYQNTSTNTPFNTLSTSLFI 125
 
Name Accession Description Interval E-value
DUF4879 pfam16219
Domain of unknown function (DUF4879); family of short proteins of bacterial proteins of phage ...
 30-140 5.67e-24

Domain of unknown function (DUF4879); family of short proteins of bacterial proteins of phage origin, exemplified by protein SPBc2p013 from Bacillus phage SPBc2, found in various Bacillus and Pseudomonas species. Structure show unexpected structural similarity to greek key beta barrels from the E-set domain, especially to domains involved in carbohydrate and protein- protein binding. However functional consequences of this similarity are not confirmed.


Pssm-ID: 435226  Cd Length: 125  Bit Score: 89.50  E-value: 5.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005574939  30 PAAPLSSLNVVQVESEQ--GGVEAINPNSFSTTRNHGGSYLYIYTKEIGYGQNPIAKMNGSAVKSIGSSVI--------- 98
Cdd:pfam16219   2 PAPPLTYVQVYGVCSSNsgGAWEYITSGQTSTPCNHGGSQLRVAVLEIGYGKNGVAWLNGGQSKNYDSDPIcgvmgnyhs 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1005574939  99 --GGNPIVGWYYKWDASGHQQGTFEYQKTSINFPFNTMRTSLYI 140
Cdd:pfam16219  82 cpAGKIVVGWLKYYNADGYQGGSFSYQNTSTNTPFNTLSTSLFI 125
 
Name Accession Description Interval E-value
DUF4879 pfam16219
Domain of unknown function (DUF4879); family of short proteins of bacterial proteins of phage ...
 30-140 5.67e-24

Domain of unknown function (DUF4879); family of short proteins of bacterial proteins of phage origin, exemplified by protein SPBc2p013 from Bacillus phage SPBc2, found in various Bacillus and Pseudomonas species. Structure show unexpected structural similarity to greek key beta barrels from the E-set domain, especially to domains involved in carbohydrate and protein- protein binding. However functional consequences of this similarity are not confirmed.


Pssm-ID: 435226  Cd Length: 125  Bit Score: 89.50  E-value: 5.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005574939  30 PAAPLSSLNVVQVESEQ--GGVEAINPNSFSTTRNHGGSYLYIYTKEIGYGQNPIAKMNGSAVKSIGSSVI--------- 98
Cdd:pfam16219   2 PAPPLTYVQVYGVCSSNsgGAWEYITSGQTSTPCNHGGSQLRVAVLEIGYGKNGVAWLNGGQSKNYDSDPIcgvmgnyhs 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1005574939  99 --GGNPIVGWYYKWDASGHQQGTFEYQKTSINFPFNTMRTSLYI 140
Cdd:pfam16219  82 cpAGKIVVGWLKYYNADGYQGGSFSYQNTSTNTPFNTLSTSLFI 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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