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Conserved domains on  [gi|1005574946|ref|WP_061667248|]
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MULTISPECIES: HNH endonuclease [unclassified Bacillus (in: firmicutes)]

Protein Classification

HNH endonuclease( domain architecture ID 10003646)

HNH endonuclease contains an HNH endonuclease signature motif and may catalyze the hydrolysis of DNA

Gene Ontology:  GO:0004519|GO:0003676|GO:0008270
PubMed:  28211904

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
McrA COG1403
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
223-283 2.31e-03

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


:

Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 36.50  E-value: 2.31e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1005574946 223 QLVMELDLNVCPYCNRqyisayysKNGKTRGDLDHFFPKKKYPylALSFYNLIPSCKVCNS 283
Cdd:COG1403    12 RAVLKRDNGRCQYCGR--------PFSGDALEVDHIIPRSRGG--TDTWENLVLLCRRCNR 62
 
Name Accession Description Interval E-value
McrA COG1403
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
223-283 2.31e-03

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 36.50  E-value: 2.31e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1005574946 223 QLVMELDLNVCPYCNRqyisayysKNGKTRGDLDHFFPKKKYPylALSFYNLIPSCKVCNS 283
Cdd:COG1403    12 RAVLKRDNGRCQYCGR--------PFSGDALEVDHIIPRSRGG--TDTWENLVLLCRRCNR 62
 
Name Accession Description Interval E-value
McrA COG1403
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
223-283 2.31e-03

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 36.50  E-value: 2.31e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1005574946 223 QLVMELDLNVCPYCNRqyisayysKNGKTRGDLDHFFPKKKYPylALSFYNLIPSCKVCNS 283
Cdd:COG1403    12 RAVLKRDNGRCQYCGR--------PFSGDALEVDHIIPRSRGG--TDTWENLVLLCRRCNR 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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