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Conserved domains on  [gi|1005575469|ref|WP_061667688|]
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MULTISPECIES: hypothetical protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RapH_N super family cl40096
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 15-66 1.56e-12

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


The actual alignment was detected with superfamily member pfam18801:

Pssm-ID: 436748  Cd Length: 62  Bit Score: 61.78  E-value: 1.56e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1005575469  15 LDDWYRVMLQQNIEKATEMKEEIESKISGLDVDQDVLLYHALLNFRYDALVD 66
Cdd:pfam18801  11 INEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
94-316 1.21e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 1.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469  94 HFFKGFHCTLISNYNEAKEQYEEAEKLlkyiaDPiEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEdftkqpgYEINLAL 173
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALEL-----DP-DDAEALYNLGLAYLRLGRYEEALADYEQALE-------LDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 174 CENILGLCCIDLRQFELAEENFNDALnvfqqaKHEKYILMVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEA 253
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKAL------ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1005575469 254 EENYKLGRVETANELIELGLRICNELQNKEFQYRFIILKELNIKSSASQLEKVTLEGILYFEE 316
Cdd:COG0457   152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
 
Name Accession Description Interval E-value
RapH_N pfam18801
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 15-66 1.56e-12

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


Pssm-ID: 436748  Cd Length: 62  Bit Score: 61.78  E-value: 1.56e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1005575469  15 LDDWYRVMLQQNIEKATEMKEEIESKISGLDVDQDVLLYHALLNFRYDALVD 66
Cdd:pfam18801  11 INEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
94-316 1.21e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 1.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469  94 HFFKGFHCTLISNYNEAKEQYEEAEKLlkyiaDPiEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEdftkqpgYEINLAL 173
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALEL-----DP-DDAEALYNLGLAYLRLGRYEEALADYEQALE-------LDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 174 CENILGLCCIDLRQFELAEENFNDALnvfqqaKHEKYILMVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEA 253
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKAL------ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1005575469 254 EENYKLGRVETANELIELGLRICNELQNKEFQYRFIILKELNIKSSASQLEKVTLEGILYFEE 316
Cdd:COG0457   152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 106-205 2.54e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 38.50  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 106 NYNEAKEQYEEAEKLLKyiaDPIEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEDFTKQPGYEINLALCENILGLCCIDL 185
Cdd:PRK02603   50 EYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA 126

                          90       100
                  ....*....|....*....|
gi 1005575469 186 RQFELAEENFNDALNVFQQA 205
Cdd:PRK02603  127 GDQDEAEALFDKAAEYWKQA 146
 
Name Accession Description Interval E-value
RapH_N pfam18801
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 15-66 1.56e-12

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


Pssm-ID: 436748  Cd Length: 62  Bit Score: 61.78  E-value: 1.56e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1005575469  15 LDDWYRVMLQQNIEKATEMKEEIESKISGLDVDQDVLLYHALLNFRYDALVD 66
Cdd:pfam18801  11 INEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
94-316 1.21e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 1.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469  94 HFFKGFHCTLISNYNEAKEQYEEAEKLlkyiaDPiEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEdftkqpgYEINLAL 173
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALEL-----DP-DDAEALYNLGLAYLRLGRYEEALADYEQALE-------LDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 174 CENILGLCCIDLRQFELAEENFNDALnvfqqaKHEKYILMVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEA 253
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKAL------ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1005575469 254 EENYKLGRVETANELIELGLRICNELQNKEFQYRFIILKELNIKSSASQLEKVTLEGILYFEE 316
Cdd:COG0457   152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 109-248 5.47e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 5.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 109 EAKEQYEEAEKLLKYI--ADPiEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEdftKQPGYeinlALCENILGLCCIDLR 186
Cdd:COG3914    89 QALGRYEEALALYRRAlaLNP-DNAEALFNLGNLLLALGRLEEALAALRRALA---LNPDF----AEAYLNLGEALRRLG 160

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1005575469 187 QFELAEENFNDALNvfQQAKHekyiLMVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKA 248
Cdd:COG3914   161 RLEEAIAALRRALE--LDPDN----AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
129-275 1.33e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.99  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 129 EHAEFNYRMGNFYYHSYQQINAIDYLKKAKEdftKQPGYEINLalceNILGLCCIDLRQFELAEENFNDALnvfqqaKHE 208
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE---LDPDDAEAL----YNLGLAYLRLGRYEEALADYEQAL------ELD 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1005575469 209 KYILMVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEAEENYKLGRVETANELIELGLRI 275
Cdd:COG0457    73 PDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 110-270 1.75e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 110 AKEQYEEAEKLLKYIAD-PIEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEDFTKQPGYEINLALCEnilglccIDLRQF 188
Cdd:COG2956    88 KAGLLDRAEELLEKLLElDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-------LEQGDY 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 189 ELAEENFNDALnvfqqaKHEKYILMVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEAEENYKLGRVETANEL 268
Cdd:COG2956   161 DEAIEALEKAL------KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234


                  ..
gi 1005575469 269 IE 270
Cdd:COG2956   235 LR 236
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 119-275 2.16e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 2.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 119 KLLKYIADPIEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEDFTKQPGYEINLALCENILGLCCIDLRQFELAEENFNDA 198
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1005575469 199 LnvfqqaKHEKYILMVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEAEENYKLGRVETANELIELGLRI 275
Cdd:COG5010    81 L------QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 106-205 2.54e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 38.50  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 106 NYNEAKEQYEEAEKLLKyiaDPIEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEDFTKQPGYEINLALCENILGLCCIDL 185
Cdd:PRK02603   50 EYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA 126

                          90       100
                  ....*....|....*....|
gi 1005575469 186 RQFELAEENFNDALNVFQQA 205
Cdd:PRK02603  127 GDQDEAEALFDKAAEYWKQA 146
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
100-265 5.56e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.97  E-value: 5.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 100 HCTLISNYNEAKEQYEEAEKLLKYIADPIEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEDFTKQPGYEiNLALCENILG 179
Cdd:COG4785     2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALP-DLAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 180 LCCIDLRQFELAEENFNDALNVFQQAKHekyilmVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEAEENYKL 259
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154


                  ....*.
gi 1005575469 260 GRVETA 265
Cdd:COG4785   155 GRYELA 160
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 112-275 7.03e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 38.44  E-value: 7.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 112 EQYEEAEKLLKYIADPIEHAEFNYRMGNfyyhsYQQinAIDYLKKAKEdftKQPGYEINLALceniLGLCCIDLRQFELA 191
Cdd:COG3914    66 EAAAAAAALLLLAALLELAALLLQALGR-----YEE--ALALYRRALA---LNPDNAEALFN----LGNLLLALGRLEEA 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 192 EENFNDALNvfQQAKHekyiLMVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEAEENYKLGRVETANELIEL 271
Cdd:COG3914   132 LAALRRALA--LNPDF----AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205


                  ....
gi 1005575469 272 GLRI 275
Cdd:COG3914   206 ALEL 209
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 100-275 7.45e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.79  E-value: 7.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 100 HCTLISNYnEAKEQYEEAEKLL-KYIADPIEHAEFNYRMGNFYYHSYQQINAIDYLKKAKEDFTKQPGYEINLALCenil 178
Cdd:COG2956    45 HLALGNLY-RRRGEYDRAIRIHqKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI---- 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575469 179 glcCIDLRQFELAEENFNDALNVFQQAKHekyilmVRNNLGWLYGSQDLSDLAIRHLSEVTQKMPKNFKAIFTEAEENYK 258
Cdd:COG2956   120 ---YEQEGDWEKAIEVLERLLKLGPENAH------AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE 190

                         170
                  ....*....|....*..
gi 1005575469 259 LGRVETANELIELGLRI 275
Cdd:COG2956   191 QGDYEEAIAALERALEQ 207
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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