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Conserved domains on  [gi|1005575524|ref|WP_061667743|]
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MULTISPECIES: TcpE family conjugal transfer membrane protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TcpE super family cl15008
TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein. ...
 8-112 4.11e-11

TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein.This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 168 amino acids in length.


The actual alignment was detected with superfamily member pfam12648:

Pssm-ID: 432696  Cd Length: 106  Bit Score: 56.56  E-value: 4.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575524   8 NFKGIMEHPVTLYKLGKYTLPFGVTLVRFMLFILILLILLAFRSVVIKIGSLI-PGLTAILFLGIPYFLSGFLTKQKYNG 86
Cdd:pfam12648   1 SYTKIWKIPKKIYKINDFSLPFPLPLSQIIVFFLSLVLLLLFASLVPLPLSMInGVLNLLLYIGIPVVLTWFASEKKPDG 80

                          90       100
                  ....*....|....*....|....*.
gi 1005575524  87 KKIFNFAYDFFDYLFTIYLPKKTYCN 112
Cdd:pfam12648  81 KKMLIFLKDVLRYLFRPKLTNKGKYV 106
 
Name Accession Description Interval E-value
TcpE pfam12648
TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein. ...
 8-112 4.11e-11

TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein.This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 168 amino acids in length.


Pssm-ID: 432696  Cd Length: 106  Bit Score: 56.56  E-value: 4.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575524   8 NFKGIMEHPVTLYKLGKYTLPFGVTLVRFMLFILILLILLAFRSVVIKIGSLI-PGLTAILFLGIPYFLSGFLTKQKYNG 86
Cdd:pfam12648   1 SYTKIWKIPKKIYKINDFSLPFPLPLSQIIVFFLSLVLLLLFASLVPLPLSMInGVLNLLLYIGIPVVLTWFASEKKPDG 80

                          90       100
                  ....*....|....*....|....*.
gi 1005575524  87 KKIFNFAYDFFDYLFTIYLPKKTYCN 112
Cdd:pfam12648  81 KKMLIFLKDVLRYLFRPKLTNKGKYV 106
 
Name Accession Description Interval E-value
TcpE pfam12648
TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein. ...
 8-112 4.11e-11

TcpE family; This family of proteins includes TcpE a conjugative transposon membrane protein.This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 168 amino acids in length.


Pssm-ID: 432696  Cd Length: 106  Bit Score: 56.56  E-value: 4.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1005575524   8 NFKGIMEHPVTLYKLGKYTLPFGVTLVRFMLFILILLILLAFRSVVIKIGSLI-PGLTAILFLGIPYFLSGFLTKQKYNG 86
Cdd:pfam12648   1 SYTKIWKIPKKIYKINDFSLPFPLPLSQIIVFFLSLVLLLLFASLVPLPLSMInGVLNLLLYIGIPVVLTWFASEKKPDG 80

                          90       100
                  ....*....|....*....|....*.
gi 1005575524  87 KKIFNFAYDFFDYLFTIYLPKKTYCN 112
Cdd:pfam12648  81 KKMLIFLKDVLRYLFRPKLTNKGKYV 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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