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Conserved domains on  [gi|1011508661|ref|WP_062403145|]
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MULTISPECIES: iron ABC transporter permease [unclassified Veillonella]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 22-331 6.16e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.00  E-value: 6.16e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  22 SLVMGRFFIPVQEVWNILLSKflvlpiTWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFRNDLVSPDLLGVSH 101
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGP------DGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 102 GASVGACLGILL--HLSLYGVAICAFIGGIAAVCLTLLLPKLIQNQSRIVLVLCGIIVSGFMAAIIGLLKYIADPDTeLQ 179
Cdd:COG0609    75 GAALGAVLAIVLggGLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQ-LR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 180 DIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIVISTLLTAAAVCLSGT 259
Cdd:COG0609   154 SIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGP 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1011508661 260 IGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALTT-AEIPLGILCGFIGTPFFAWVLYKQR 331
Cdd:COG0609   234 IGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILApAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 22-331 6.16e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.00  E-value: 6.16e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  22 SLVMGRFFIPVQEVWNILLSKflvlpiTWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFRNDLVSPDLLGVSH 101
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGP------DGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 102 GASVGACLGILL--HLSLYGVAICAFIGGIAAVCLTLLLPKLIQNQSRIVLVLCGIIVSGFMAAIIGLLKYIADPDTeLQ 179
Cdd:COG0609    75 GAALGAVLAIVLggGLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQ-LR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 180 DIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIVISTLLTAAAVCLSGT 259
Cdd:COG0609   154 SIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGP 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1011508661 260 IGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALTT-AEIPLGILCGFIGTPFFAWVLYKQR 331
Cdd:COG0609   234 IGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILApAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 15-329 1.51e-78

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 242.43  E-value: 1.51e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  15 CAGIFLLSLVMGRFFIPVQEVWNILLSKflvlpitWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFRNDLVSP 94
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSALLGG-------DDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  95 DLLGVSHGASVGACLGILLH--LSLYGVAICAFIGGIAAVCLTLLLPKLIQNQSRIVLVLCGIIVSGFMAAIIGLLKYIA 172
Cdd:pfam01032  75 SILGISSGAALGAVLAILLGgsLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 173 DPDTeLQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIVISTLLTAA 252
Cdd:pfam01032 155 NPEA-LQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAA 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1011508661 253 AVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALTT-AEIPLGILCGFIGTPFFAWVLYK 329
Cdd:pfam01032 234 SVAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSpYELPVGIVTALIGAPFFIYLLLR 311
btuC PRK09535
cobalamin ABC transporter permease BtuC;
57-327 4.03e-56

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 186.49  E-value: 4.03e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  57 VVMEIRLPRVLGAILVGIALAVSGTAYQGVFRNDLVSPDLLGVSHGASVGACLGILLHLSL-YGVAICAFIGGIAAVCLT 135
Cdd:PRK09535   90 IVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVpFGLQAAAFAGALVAAFGV 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 136 LLLPKLIQNQSRIVLVLCGIIVSGFMAAIIGLLKYIADPDteLQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALR 215
Cdd:PRK09535  170 YAIATENGRTPVATLLLAGVAVQTFLGAVISYLLLHSGES--LRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYA 247

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 216 WRLNILSLSDQEAQSLGINVHKERIVIIVISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLM 295
Cdd:PRK09535  248 RDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLV 327

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1011508661 296 VADLFARAlTTAEIPLGILCGFIGTPFFAWVL 327
Cdd:PRK09535  328 ATDTVARS-GPAEVPVGIVTAALGAPFFLYLL 358
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 66-327 7.67e-50

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 166.96  E-value: 7.67e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  66 VLGAILVGIALAVSGTAYQGVFRNDLVSPDLLGVSHGASVGACLGILL--HLSLYGVAICAFIGGIAAVCLTLLLPKLIQ 143
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLgiGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 144 NQSRiVLVLCGIIVSGFMAAIIGLLKYIADPDteLQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSL 223
Cdd:cd06550    81 LSPS-KLILIGIVLSAFFSAGVILISLLSDDS--LQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTF 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 224 SDQEAQSLGINVHKERIVIIVISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARA 303
Cdd:cd06550   158 DEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRT 237

                         250       260
                  ....*....|....*....|....
gi 1011508661 304 LTTAEIPLGILCGFIGTPFFAWVL 327
Cdd:cd06550   238 LLPSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 22-331 6.16e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.00  E-value: 6.16e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  22 SLVMGRFFIPVQEVWNILLSKflvlpiTWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFRNDLVSPDLLGVSH 101
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGP------DGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 102 GASVGACLGILL--HLSLYGVAICAFIGGIAAVCLTLLLPKLIQNQSRIVLVLCGIIVSGFMAAIIGLLKYIADPDTeLQ 179
Cdd:COG0609    75 GAALGAVLAIVLggGLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQ-LR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 180 DIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIVISTLLTAAAVCLSGT 259
Cdd:COG0609   154 SIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGP 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1011508661 260 IGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALTT-AEIPLGILCGFIGTPFFAWVLYKQR 331
Cdd:COG0609   234 IGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILApAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 15-329 1.51e-78

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 242.43  E-value: 1.51e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  15 CAGIFLLSLVMGRFFIPVQEVWNILLSKflvlpitWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFRNDLVSP 94
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSALLGG-------DDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  95 DLLGVSHGASVGACLGILLH--LSLYGVAICAFIGGIAAVCLTLLLPKLIQNQSRIVLVLCGIIVSGFMAAIIGLLKYIA 172
Cdd:pfam01032  75 SILGISSGAALGAVLAILLGgsLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 173 DPDTeLQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIVISTLLTAA 252
Cdd:pfam01032 155 NPEA-LQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAA 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1011508661 253 AVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALTT-AEIPLGILCGFIGTPFFAWVLYK 329
Cdd:pfam01032 234 SVAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSpYELPVGIVTALIGAPFFIYLLLR 311
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 9-332 5.63e-60

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 195.72  E-value: 5.63e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661   9 VIAVLVCAGIFLLSLVMGRFFIPVQEVWNILLSkflvlpiTWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFR 88
Cdd:COG4779    27 LVLLLLLLALAVLALTLGDYPLSPGDVLRALLG-------EGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTR 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  89 NDLVSPDLLGVSHGASVGACLGILL-HLSLYGVAICAFIGGIAAVCLTLLLPKLIQNQS-RIVLVlcGIIVSGFMAAIIG 166
Cdd:COG4779   100 NPLASPDIIGITAGASAGAVAAIVVlGGSGLAVALGALAGGLATALLVYLLAWRGGVSGyRLILV--GIGVSAMLTAVNS 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 167 LLKYIADPDtELQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIVIS 246
Cdd:COG4779   178 YLLTRADLE-DAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 247 TLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAiVVSASFLMVADLFAR-ALTTAEIPLGILCGFIGTPFFAW 325
Cdd:COG4779   257 VALAAVATAAAGPIAFVALAAPQIARRLTRSPGPPLLPSA-LVGALLLLAADLVAQhLLAPVQLPVGVVTGALGGPYLLW 335


                  ....*..
gi 1011508661 326 VLYKQRR 332
Cdd:COG4779   336 LLIRENR 342
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 2-333 1.31e-57

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 188.91  E-value: 1.31e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661   2 HHYKRTMVIAVLVCAGIFLLSLVMGRFFIPVQEVWNILLSKFlvlpitwdasmynvVMEIRLPRVLGAILVGIALAVSGT 81
Cdd:COG4139     9 RRDRRWLLLLLLLLLLLFVLSLCAGEVWIPPTQWLSEAWQLF--------------VWQLRLPRTLAAVLVGASLAVSGA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  82 AYQGVFRNDLVSPDLLGVSHGASVGACLGILLH---LSLYGVAICAFIGGIAAVCLTLLLPKLIQNQSRIVLVlcGIIVS 158
Cdd:COG4139    75 VMQALFENPLAEPGLLGISNGAGVGLVLVVLLGgglLPPWLLSLAAIAGALLVTLLLLAFARRRLSNARLLLI--GVALG 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 159 GFMAAIIGLLKYIADpDTELQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRwRLNILSLSDQEAQSLGINVHKE 238
Cdd:COG4139   153 IICSAIMTWAVYFSS-SLDLRQLMYWMMGSFGGVDWRQLWLLLALLPVLLWLCLQGK-PLNLLLLGENQARQLGLSVHRW 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 239 RIVIIVISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFAR-ALTTAEIPLGILCGF 317
Cdd:COG4139   231 RNLLVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARlALSSAELPIGVVTAT 310

                         330
                  ....*....|....*.
gi 1011508661 318 IGTPFFAWVLYKQRRY 333
Cdd:COG4139   311 LGAPVFIWLLLRRRKI 326
btuC PRK09535
cobalamin ABC transporter permease BtuC;
57-327 4.03e-56

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 186.49  E-value: 4.03e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  57 VVMEIRLPRVLGAILVGIALAVSGTAYQGVFRNDLVSPDLLGVSHGASVGACLGILLHLSL-YGVAICAFIGGIAAVCLT 135
Cdd:PRK09535   90 IVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVpFGLQAAAFAGALVAAFGV 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 136 LLLPKLIQNQSRIVLVLCGIIVSGFMAAIIGLLKYIADPDteLQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALR 215
Cdd:PRK09535  170 YAIATENGRTPVATLLLAGVAVQTFLGAVISYLLLHSGES--LRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYA 247

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 216 WRLNILSLSDQEAQSLGINVHKERIVIIVISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLM 295
Cdd:PRK09535  248 RDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLV 327

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1011508661 296 VADLFARAlTTAEIPLGILCGFIGTPFFAWVL 327
Cdd:PRK09535  328 ATDTVARS-GPAEVPVGIVTAALGAPFFLYLL 358
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
2-332 2.26e-52

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 183.12  E-value: 2.26e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661   2 HHYKRTMVIAVLVCAGIFLLSLVMGRFFIPVQEVWNILlskflvlpitwDASMYNVVMEIRLPRVLGAILVGIALAVSGT 81
Cdd:PRK10577  348 AARRRRVLAWLLALGLLLLLALVVALSFGRDAHGWNWL-----------SGQLLDALLPLRLPRLLAALLAGAMLAVAGT 416

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  82 AYQGVFRNDLVSPDLLGVSHGASVGACLGILL--HLSLYGVAICAFIGGIAAVCLTLLLPKLiQNQSRIVLVLCGIIVSG 159
Cdd:PRK10577  417 LLQRLTRNPLASPEVLGISSGAGLGVVLALFLvpGAGFGWLLAAALLGALAALALILLLARR-GGFAPERLLLTGIALSA 495

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 160 FMAAIIGLLKYIADPDTelQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKER 239
Cdd:PRK10577  496 LFTALIQLLLASGDPRA--AQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRAR 573

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 240 IVIIVISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFAR-ALTTAEIPLGILCGFI 318
Cdd:PRK10577  574 LALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRtLLFPYQIPAGLLAALI 653

                         330
                  ....*....|....
gi 1011508661 319 GTPFFAWVLYKQRR 332
Cdd:PRK10577  654 GAPYFLWLLRRSRR 667
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
6-331 1.95e-51

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 172.92  E-value: 1.95e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661   6 RTMVIAVLVCAGIFLLSLVMGRFFIPvqevWNILLSKFLVlpitwDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQG 85
Cdd:PRK09777    4 ALVIFITLALAGCALLSLRMGVIPLP----WRALLTDWQA-----GDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  86 VFRNDLVSPDLLGVSHGASVGACLGILL--HLSLYGVAICAFIGGIAAvcltLLLPKLIQNQSR-IVLVLCGIIVSGFMA 162
Cdd:PRK09777   75 IVRNPLASPDILGVNHAASLASVGALLLfpSLPVMWLPLLAFIGGMAG----LILLKMLAGTHQpMKLALTGVALSALWA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 163 AIIGLLkyIADPDTELQDIVYWQLGSLAKVTWDNLFYVLPIIVIgtLAIVALRW--RLNILSLSDQEAQSLGINVHKERI 240
Cdd:PRK09777  151 SLTDYL--MLSRPQDINNALLWLTGSLWGRDWSFVKVALPWLIL--LLPLSLSFcrDLDLLALGDARATTLGVSVPHTQF 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 241 VIIVISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALT-TAEIPLGILCGFIG 319
Cdd:PRK09777  227 WALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHpPLELPAGVLTAIIG 306

                         330
                  ....*....|..
gi 1011508661 320 TPFFAWVLYKQR 331
Cdd:PRK09777  307 APWFFWLLVRMR 318
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 2-332 1.94e-50

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 170.52  E-value: 1.94e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661   2 HHYKRTMVIAVLVCAGIFLLSLVMGRFFIPVQEVWNILLSKFLVlpitwdasmynvvmEIRLPRVLGAILVGIALAVSGT 81
Cdd:PRK03784   12 RRNRRWLLGLSVLLLLALLLSLCAGEQWISPGDWLSPRGELFVW--------------QLRLPRTLAVLLVGAALAVSGA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  82 AYQGVFRNDLVSPDLLGVSHGASVGACLGILLH---LSLYGVAICAFIGgiaAVCLTLLLPKLIQ----NQSRIVL--VL 152
Cdd:PRK03784   78 VMQALFENPLAEPGLLGVSNGAGVALVAAVLLGqglLPPWALSLCAIAG---ALLITLILLRFARrhrlSTSRLLLagVA 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 153 CGIIVSGFMAAIIgllkYIADpDTELQDIVYWQLGSLAKVTWDNLFYVLPIIvigtLAIVALRWR---LNILSLSDQEAQ 229
Cdd:PRK03784  155 LGIICSALMTWAV----YFST-SLDLRQLMYWMMGGFGGVDWRQSWLMLALL----PVLIWLCCQgrpLNMLALGEISAR 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 230 SLGINVHKERIVIIVISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFAR-ALTTAE 308
Cdd:PRK03784  226 QLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARlALASAE 305

                         330       340
                  ....*....|....*....|....
gi 1011508661 309 IPLGILCGFIGTPFFAWVLYKQRR 332
Cdd:PRK03784  306 LPIGVVTATLGAPVFIWLLLRSHR 329
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 66-327 7.67e-50

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 166.96  E-value: 7.67e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  66 VLGAILVGIALAVSGTAYQGVFRNDLVSPDLLGVSHGASVGACLGILL--HLSLYGVAICAFIGGIAAVCLTLLLPKLIQ 143
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLgiGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 144 NQSRiVLVLCGIIVSGFMAAIIGLLKYIADPDteLQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSL 223
Cdd:cd06550    81 LSPS-KLILIGIVLSAFFSAGVILISLLSDDS--LQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTF 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 224 SDQEAQSLGINVHKERIVIIVISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARA 303
Cdd:cd06550   158 DEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRT 237

                         250       260
                  ....*....|....*....|....
gi 1011508661 304 LTTAEIPLGILCGFIGTPFFAWVL 327
Cdd:cd06550   238 LLPSELPVGPVTALLGAPYFLYLL 261
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
10-331 2.85e-49

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 167.18  E-value: 2.85e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  10 IAVLVCAGIFLLSL-VMGRFFIPVQEVWNILLskflvlPITWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFR 88
Cdd:PRK11228    4 LPVAALIGLFWLSLfCYSAIPISAADALNALL------PGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTH 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  89 NDLVSPDLLGVSHGASVGACLGILLH---LSLYGVAICAFIGG-IAAVCLTLLLPKLIQNQSRIVLVLCGIIVSGFMAAI 164
Cdd:PRK11228   78 NPLASPSLLGINSGAALAMALTSALSptpFAGYSLAFIAACGGgLSWLLVMTAGGGWRHTHDRNRLILAGIALSALCMAL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 165 IGLLKYIADpdTELQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIV 244
Cdd:PRK11228  158 TRITLLLAE--DHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNM 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 245 ISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALT-TAEIPLGILCGFIGTPFF 323
Cdd:PRK11228  236 LVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAfPGELPAGAVLALIGAPCF 315


                  ....*...
gi 1011508661 324 AWVLYKQR 331
Cdd:PRK11228  316 VWLARRRG 323
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
10-332 3.00e-47

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 168.86  E-value: 3.00e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  10 IAVLVCAGIFLLSLVMGRFFIPVQEVWNILLSkflvlpITWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFRN 89
Cdd:PRK10577   16 LLALLLLLALALTLTQLSAALPLSQWLQALWG------PDADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRN 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  90 DLVSPDLLGVSHGASVGACLGILLHLSLYGVA--ICAFIGGIAAVCLTLLLpKLIQNQSRIVLVLCGIIVSGFMAAIIGL 167
Cdd:PRK10577   90 PLASPTTLGVAAGAQLALVLATLFAPALLALAsqLAAFAGGLLAAALVFAL-AGGKRLSPLRLVLAGMVVSLYLGALTTL 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 168 LkyIADPDTELQDIVYWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIVIST 247
Cdd:PRK10577  169 L--LLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAV 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 248 LLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALT---TAEIPLGILCGFIGTPFFA 324
Cdd:PRK10577  247 LLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAgvgGELLPTGAVTALIGAPLLL 326


                  ....*...
gi 1011508661 325 WVLYKQRR 332
Cdd:PRK10577  327 WLLPRLRS 334
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
20-332 2.40e-34

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 128.29  E-value: 2.40e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  20 LLSLVMGRFFIPVQEVWNILLSkflvlpiTWDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQGVFRNDLVSPDLLGV 99
Cdd:PRK10441   25 ALSLLIGAKSLPASVVLEALSG-------TCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGV 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 100 SHGASVGACLGILLH--LSLYGVAICAFIGGIAAVCLTLLLPKLIQNQ-SRIVLVLCGIIVSgfmAAIIGLLKYIADPDT 176
Cdd:PRK10441   98 NAGASFAIVLGAALFgySSAQEQLAMAFAGALVASLIVAFTGSQGGGQlSPVRLTLAGVALA---AVLEGLTSGIALLNP 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 177 ELQDIV-YWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIVISTLLTAAAVC 255
Cdd:PRK10441  175 DVYDQLrFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATA 254

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1011508661 256 LSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIVVSASFLMVADLFARALTTAEIPLGILCGFIGTPFFAWVLYKQRR 332
Cdd:PRK10441  255 VVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAPVLIFLVRRKTR 331
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
6-332 1.44e-32

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 123.28  E-value: 1.44e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661   6 RTMVIAVLVCAGIFLLSLVMGRFFIPVQEVWNILLSKFlvlpitwDASMYNVVMEIRLPRVLGAILVGIALAVSGTAYQG 85
Cdd:PRK10440   10 ITCLLLLAACVAAGLWGLRSGAVTLETSQVFAALMGDA-------PRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  86 VFRNDLVSPDLLGVSHGASVGACLGI-LLHLSLYGVAICAFIGGIAAVCLTLLLpKLIQNQSRIVLVLCGIIVSGFMAAI 164
Cdd:PRK10440   83 LMRNPLGSPDVMGFNTGAWSGVLVAMvLFGQDLTAIALAAMAGGIVTSLLVWLL-AWRNGIDTFRLIIIGIGVRAMLVAF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 165 IGLLKYIADPDTELQDIVyWQLGSLAKVTWDNLFYVLPIIVIGTLAIVALRWRLNILSLSDQEAQSLGINVHKERIVIIV 244
Cdd:PRK10440  162 NTWLLLKASLETALTAGL-WNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLML 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 245 ISTLLTAAAVCLSGTIGWVGLVIPHLSRMLVGHDHKKLIPAAIvVSASFLMVADLFARAL-TTAEIPLGILCGFIGTPFF 323
Cdd:PRK10440  241 VAVVLTAAATALAGPISFIALVAPHIARRLSGTARWGLTQAAL-CGALLLLAADLCAQQLfMPYQLPVGVVTVSLGGIYL 319


                  ....*....
gi 1011508661 324 AWVLYKQRR 332
Cdd:PRK10440  320 IVLLIQESR 328
ZnuB COG1108
ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and ...
 98-291 4.57e-06

ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440725  Cd Length: 260  Bit Score: 47.35  E-value: 4.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661  98 GVSHGASVGACLGILLHLSLYgvaICAFIGGIAAVCLTLLLPKLIQNQSRIVLvlcGIIVSGFMAAIIGLLKYIADPDTE 177
Cdd:COG1108    36 ALSHAALPGVALAFLLGLSPL---LGALVAGLLAALLIGLLRRRSRLKEDTAI---GIVFSGGFALGVLLISLVPGSAVD 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011508661 178 LQDIVYwqlGSLAKVTWDNLfYVLPIIVIGTLAIVALRWR-LNILSLSDQEAQSLGINVHKERIVIIVISTLLTAAAVCL 256
Cdd:COG1108   110 LMSYLF---GSILAVSRSDL-LLLAVLAAVVLLLLLLFYReLLLVSFDPELARASGLPVRLLHLLLLVLLALTVVAALQA 185

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1011508661 257 SGTIGWVGL-VIPHLSRMLVGHDHKKLIPAAIVVSA 291
Cdd:COG1108   186 VGALLVSALlIIPAATARLLTRSLRRMLLLAVLIGV 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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