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Conserved domains on  [gi|1011587545|ref|WP_062459509|]
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Flp family type IVb pilin [Vibrio mediterranei]

Protein Classification

Flp family type IVb pilin( domain architecture ID 10008072)

Flp/Fap (fibril-associated protein) family type IVb pilin similar to Aggregatibacter actinomycetemcomitans Flp-1, which is required for non-specific adherence of the bacterium

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 12-70 3.18e-10

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 443057  Cd Length: 58  Bit Score: 49.78  E-value: 3.18e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1011587545 12 FLSQFKNDQRGVTAIEYGLIGVAMAVALSVALSTsgsdgFINELKLAFTKIGDTIETST 70
Cdd:COG3847    4 LLKRFLKDESGATAIEYGLIAALIAVAIIAAVTT-----LGTALNGLFTSIATALTGAN 57
 
Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 12-70 3.18e-10

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443057  Cd Length: 58  Bit Score: 49.78  E-value: 3.18e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1011587545 12 FLSQFKNDQRGVTAIEYGLIGVAMAVALSVALSTsgsdgFINELKLAFTKIGDTIETST 70
Cdd:COG3847    4 LLKRFLKDESGATAIEYGLIAALIAVAIIAAVTT-----LGTALNGLFTSIATALTGAN 57
Flp_Fap pfam04964
Flp/Fap pilin component;
16-66 6.08e-08

Flp/Fap pilin component;


Pssm-ID: 398567  Cd Length: 46  Bit Score: 43.74  E-value: 6.08e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1011587545 16 FKNDQRGVTAIEYGLIGVAMAVALSVALSTSGSdgfinELKLAFTKIGDTI 66
Cdd:pfam04964  1 FLKDESGATAIEYGLIAALIAVVIIAYVTTLGT-----ALKTAFTSIATAL 46
 
Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 12-70 3.18e-10

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443057  Cd Length: 58  Bit Score: 49.78  E-value: 3.18e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1011587545 12 FLSQFKNDQRGVTAIEYGLIGVAMAVALSVALSTsgsdgFINELKLAFTKIGDTIETST 70
Cdd:COG3847    4 LLKRFLKDESGATAIEYGLIAALIAVAIIAAVTT-----LGTALNGLFTSIATALTGAN 57
Flp_Fap pfam04964
Flp/Fap pilin component;
16-66 6.08e-08

Flp/Fap pilin component;


Pssm-ID: 398567  Cd Length: 46  Bit Score: 43.74  E-value: 6.08e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1011587545 16 FKNDQRGVTAIEYGLIGVAMAVALSVALSTSGSdgfinELKLAFTKIGDTI 66
Cdd:pfam04964  1 FLKDESGATAIEYGLIAALIAVVIIAYVTTLGT-----ALKTAFTSIATAL 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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