|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 985.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 1 MSKKIEQQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEVGDYYEALL 80
Cdd:PRK11007 1 MMSKINQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 81 ATTGQKSADKEQAKLAARQNMKWHEQMISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMHPSLQTAYDFL 160
Cdd:PRK11007 81 ATTGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDGQTLAQMYPFWQTIYDFL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 161 WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGQQVPEVWNFGLFTIEKVGYQAQVIPALLAGL 240
Cdd:PRK11007 161 WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFGLFSIEKVGYQAQVIPALLAGL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 241 TLGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLLTGSFAPIGAALFGFLYAPLVITG 320
Cdd:PRK11007 241 ALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSFAPIGAALFGFLYAPLVITG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 321 VHQTTLAIDMQMIQSMGGTPVWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPML 400
Cdd:PRK11007 321 VHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPML 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1011971823 401 CAMIGSGIAGLLCGLYGVLANGIGVGGLPGILSIKPTFWGVYSIAMIISIVVPIILTMVVYKRKQKMGTLPV 472
Cdd:PRK11007 401 CAMIGSALAGLICGLNGVMANGIGVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFIYKRKERLGTLDI 472
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
7-462 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 679.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 7 QQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIG-TEVGDYYEALLATTGQ 85
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGpGTVDKVYAALIAETGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 86 KSADKEQAKLAARQNMKWHEQMISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSN-GQTLAQMHPSLQTAYDFLWLIG 164
Cdd:TIGR01992 81 AEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFgGQTLVEVYPQWAGIYNFINLIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 165 EAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGQQVPE----VWN-FGLFTIEKVGYQAQVIPALLAG 239
Cdd:TIGR01992 161 ETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEgnipVWDlFGFFEIQKVGYQGQVLPALLAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 240 LTLGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLLTgSFAPIGAALFGFLYAPLVIT 319
Cdd:TIGR01992 241 YVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFT-SAAWLGGAIFGLLYAPLVIT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 320 GVHQTTLAIDMQMIQSMGGTPVWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPM 399
Cdd:TIGR01992 320 GLHHMFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPF 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1011971823 400 LCAMIGSGIAGLLCGLYGVLANGIGVGGLPGILSIKPTFWGVYSIAMIISIVVPIILTMVVYK 462
Cdd:TIGR01992 400 IAAMIGSGLAGLLSGLNGVLANSIGVGGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
97-469 |
2.66e-101 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 311.11 E-value: 2.66e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 97 ARQNMKWHEQMISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGqtlaqmHPSLQTAYDFLWLIGEAIFFYLPVGIC 176
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGE------GSFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 177 WSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGqqvPEVWNFGLFTIeKVGYQAQVIPALLAGLTLGFIETRLKRIVPDY 256
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVA---GGYISFLGIPT-LIGYQGGVFPGILAGWLAAYLEKFLKKKLPDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 257 LYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVrHLLTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMIQSM 336
Cdd:COG1263 151 LGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGL-GWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGT 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 337 GGTPVWPMIALSNIAQASAVVGIIICSR-KAKEREISVPAAISAYL-GVTEPAMYGINLKYRFPMLCAMIGSGIAGLLCG 414
Cdd:COG1263 230 GDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAG 309
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1011971823 415 LYGVLANGIGVGGLPGILSIKP---TFWGVYSIAMIISIVVPIILTMVVYKRKQKMGT 469
Cdd:COG1263 310 LLGVKAFSFGVGGLIDFPSILNpgaTNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEE 367
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
7-84 |
6.94e-29 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 108.39 E-value: 6.94e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1011971823 7 QQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEVGDYYEALLATTG 84
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
113-407 |
7.49e-25 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 104.35 E-value: 7.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 113 EIFFPLLPALISGGLILGfrnvIGDLPMSNGQTLAQMHPSLQTAYDFLWLIGEAIFFYLPVGICWSAVKKM-GGTPILGI 191
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLG----LGNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 192 VLGVTLVSPQLMNAY---MLGQQVPEVWNFGLFTIEKVGYQAQVIPALLAGLTLGFIETRLKRIVPDYLYLVIVPVCSLI 268
Cdd:pfam02378 78 AGLIGLLSFNLAAAIsvaLTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 269 LAVFLAHAIIGPFGRWIGDGVAFAVRH---LLTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMI-----QSMGGTP 340
Cdd:pfam02378 158 ITGFVTLLVIGPVLGLIWPAIQGGLNAlglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPiggsnPIANQQA 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1011971823 341 VWP----------MIALSNIAQASAVVGII-ICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGSG 407
Cdd:pfam02378 238 YGAgaahiltggfDVMFGGPGATLALYAAAfLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 985.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 1 MSKKIEQQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEVGDYYEALL 80
Cdd:PRK11007 1 MMSKINQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 81 ATTGQKSADKEQAKLAARQNMKWHEQMISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMHPSLQTAYDFL 160
Cdd:PRK11007 81 ATTGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDGQTLAQMYPFWQTIYDFL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 161 WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGQQVPEVWNFGLFTIEKVGYQAQVIPALLAGL 240
Cdd:PRK11007 161 WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFGLFSIEKVGYQAQVIPALLAGL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 241 TLGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLLTGSFAPIGAALFGFLYAPLVITG 320
Cdd:PRK11007 241 ALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSFAPIGAALFGFLYAPLVITG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 321 VHQTTLAIDMQMIQSMGGTPVWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPML 400
Cdd:PRK11007 321 VHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPML 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1011971823 401 CAMIGSGIAGLLCGLYGVLANGIGVGGLPGILSIKPTFWGVYSIAMIISIVVPIILTMVVYKRKQKMGTLPV 472
Cdd:PRK11007 401 CAMIGSALAGLICGLNGVMANGIGVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFIYKRKERLGTLDI 472
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
7-462 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 679.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 7 QQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIG-TEVGDYYEALLATTGQ 85
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGpGTVDKVYAALIAETGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 86 KSADKEQAKLAARQNMKWHEQMISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSN-GQTLAQMHPSLQTAYDFLWLIG 164
Cdd:TIGR01992 81 AEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFgGQTLVEVYPQWAGIYNFINLIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 165 EAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGQQVPE----VWN-FGLFTIEKVGYQAQVIPALLAG 239
Cdd:TIGR01992 161 ETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEgnipVWDlFGFFEIQKVGYQGQVLPALLAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 240 LTLGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLLTgSFAPIGAALFGFLYAPLVIT 319
Cdd:TIGR01992 241 YVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFT-SAAWLGGAIFGLLYAPLVIT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 320 GVHQTTLAIDMQMIQSMGGTPVWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPM 399
Cdd:TIGR01992 320 GLHHMFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPF 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1011971823 400 LCAMIGSGIAGLLCGLYGVLANGIGVGGLPGILSIKPTFWGVYSIAMIISIVVPIILTMVVYK 462
Cdd:TIGR01992 400 IAAMIGSGLAGLLSGLNGVLANSIGVGGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
6-459 |
3.33e-128 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 379.72 E-value: 3.33e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 6 EQQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGT-EVGDYYEALLATTG 84
Cdd:TIGR01996 2 YQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTgVVNKVYDEIVKLTG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 85 QKSADKEQAKLAARQNMKWHEQMISHFAEIFFPLLPALISGGLILGFRNVIgDLPMSNGQTLAQMHPSLQTAYDFLWLIG 164
Cdd:TIGR01996 82 LSESSTSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGML-TAFGLFGLSGVSVAPIPEGLAEMINVFT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 165 EAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGQQVPEV--WNFGLFTIEKVGYQAQVIPALLAGLTL 242
Cdd:TIGR01996 161 STAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAGTATGkaWNIFGLHIPVVGYQGTVLPVLVAVWIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 243 GFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLLTGSFaPIGAALFGFLYAPLVITGVH 322
Cdd:TIGR01996 241 AKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPG-GLGGLLFGGLYSLIVITGIH 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 323 QTTLAIDMQMIQS--MGGTPVWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPML 400
Cdd:TIGR01996 320 HSFHAIETQLLANtkTGGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGITEPAIFGVNLRYRKPFI 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1011971823 401 CAMIGSGIAGLLCGLYGVLANGIGVGGLPGILSIKPTF--WGVYSIAMIISIVVPIILTMV 459
Cdd:TIGR01996 400 AALIGGAIGGAYVVLFHVAATAYGLTGIPGFLSILPSGinLLHYIVGMLIAFAVAFIATLL 460
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
97-469 |
2.66e-101 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 311.11 E-value: 2.66e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 97 ARQNMKWHEQMISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGqtlaqmHPSLQTAYDFLWLIGEAIFFYLPVGIC 176
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGE------GSFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 177 WSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGqqvPEVWNFGLFTIeKVGYQAQVIPALLAGLTLGFIETRLKRIVPDY 256
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVA---GGYISFLGIPT-LIGYQGGVFPGILAGWLAAYLEKFLKKKLPDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 257 LYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVrHLLTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMIQSM 336
Cdd:COG1263 151 LGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGL-GWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGT 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 337 GGTPVWPMIALSNIAQASAVVGIIICSR-KAKEREISVPAAISAYL-GVTEPAMYGINLKYRFPMLCAMIGSGIAGLLCG 414
Cdd:COG1263 230 GDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAG 309
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1011971823 415 LYGVLANGIGVGGLPGILSIKP---TFWGVYSIAMIISIVVPIILTMVVYKRKQKMGT 469
Cdd:COG1263 310 LLGVKAFSFGVGGLIDFPSILNpgaTNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEE 367
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
164-448 |
3.56e-86 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 266.11 E-value: 3.56e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 164 GEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGQQVPEvwNFGLFTIEKVGYQAQVIPALLAGLTLG 243
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVG--NFFGFEIAKVGYTGVVGPIIVGAIALA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 244 FIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLLTGSFAPIGAALFGFLYAPLVITGVHQ 323
Cdd:TIGR00852 79 LHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 324 TTLAIDMQMIQS---MGGTPVWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPML 400
Cdd:TIGR00852 159 IFYAIFIQLIAGgtvIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFV 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1011971823 401 CAMIGSGIAGLLCGLYGVLANGIGVGGLPGILSIKPTF---WGVYSIAMII 448
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLagsIFTVAIGMGI 289
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
7-465 |
2.20e-81 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 263.83 E-value: 2.20e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 7 QQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEVGDYYEALLATTGqK 86
Cdd:TIGR01995 2 QDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLG-L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 87 SADKEQAKLAARQNmkWHEQMISHFAEIFFPLLPALISGGLILGFRNVigdLPMSNgqtlaQMHPSLQTaYDFLWLIGEA 166
Cdd:TIGR01995 81 DDQAEDDDSKGKKS--ILNKLIDLISGVFTPLLPALAGAGLLKAVLTL---LTMTG-----LISADSQT-YQILNAMGDA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 167 IFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNayMLGQQVPeVWNFGLfTIEKVGYQAQVIPALLAGLTLGFIE 246
Cdd:TIGR01995 150 VFYFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVA--MVGSGKP-VTFFGI-PVTLMSYSSSVIPVILAVWLMSYVE 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 247 TRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLLTgsFAP-IGAALFGFLYAPLVITGVHQTT 325
Cdd:TIGR01995 226 KFLKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYE--VSPwLAGALLAALWPVLVMFGLHWAM 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 326 LAIDMQMIQSMGGTPVW-PMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMI 404
Cdd:TIGR01995 304 IPIVINNIATQGFDPLIlPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMI 383
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1011971823 405 GSGIAGLLCGLYGVLANGIGVGGLPGILSI--KPTFWGVYS--IAMIISIVVPIILTMVVYKRKQ 465
Cdd:TIGR01995 384 GGAVGGAIIGIGSVKAFTAFAPGLLGLPMFinPSDGANFISalIAIVISFVVSFVLTYFIGFKDQ 448
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
11-459 |
8.47e-53 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 188.00 E-value: 8.47e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 11 DKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEVGDYYEALLATTGQksADK 90
Cdd:PRK09824 8 REIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNSVAGL--GEK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 91 EQAKLAARQNMKWHEQMISHFAEIFFPLLPALISGGLILGFrnvigdlpMSNGQTLAQMHPSLQTaYDFLWLIGEAIFFY 170
Cdd:PRK09824 86 AQQAPENDKKGNLLNRFIDVISGIFTPLIGVMAATGILKGM--------LALALTFGWTTEQSGT-YKILFAASDALFFF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 171 LPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYMLGQQV-PEVWNFGLFTIEKVGYQAQVIPALLAGLTLGFIETRL 249
Cdd:PRK09824 157 FPIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFEAGQKAdALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 250 KRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAvrHLLTGSFAP-IGAALFGFLYAPLVITGVHQTTLAI 328
Cdd:PRK09824 237 NAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAG--YQWLYQAVPaFAGAVMGAFWQVFVIFGLHWGLVPL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 329 DMQMIQSMGGTPVWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGSGI 408
Cdd:PRK09824 315 MINNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISGAL 394
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1011971823 409 AGLLCGLYGVLANGIGVGGLPGILSIKP------TFWgvysiAMIISIVVPIILTMV 459
Cdd:PRK09824 395 GAAIIGYAQTKVYSFGLPSIFTFMQTIPptgidfTVW-----ASVIGTVIAIGCAFV 446
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
3-457 |
5.36e-41 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 152.91 E-value: 5.36e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 3 KKIEQQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIG----TEVGDYYEA 78
Cdd:PRK09586 2 AKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGpgkaQRAAKAMNE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 79 LLATTGQKSADKEQAKLAARQNMKWHE-----QMISHFAEIFFPLLPALISGGLILGFRNVIGD---LPMSNGQTLAQMh 150
Cdd:PRK09586 82 LLGEAAAPVQDLAEIAAQNKRQLKAKQtsgvqQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQvmhVPADAQGTLPDA- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 151 pslqtaYDFLWLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLV---SPQLMNAYMLGQQvpevwNFGLFTIEKVG 227
Cdd:PRK09586 161 ------LNYMKVFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLlgyNPAATTGYYAGFH-----DFFGLPIDPRG 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 228 yqaQVIPALLAGLTLGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLltgSFAPIGAA 307
Cdd:PRK09586 230 ---NIIGVLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHL---NSNPFGCA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 308 LFGFLYAPLVITGVHQTTLAIDMQMIQSMGGTPVWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAI-SAYLGVTEP 386
Cdd:PRK09586 304 VLAGLFLIAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIiPGLLGVGEP 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 387 AMYGINLKYRFPMLCAMIGSGIAGLLCGLYGVLanGIGVG-----------GLPGILSIKPTFWG--VYSIAMIISIVVP 453
Cdd:PRK09586 384 LIYGVTLPRMKPFVTACLGGAAGGFFIGLIAWL--GLPVGlnsvfgpsglvALPLMTSAQGILPGmaVYAGGLLVAYVCG 461
|
....
gi 1011971823 454 IILT 457
Cdd:PRK09586 462 FIFT 465
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
13-456 |
7.66e-40 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 149.56 E-value: 7.66e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 13 LIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEVGDYYEALLATTGQKSADKEQ 92
Cdd:PRK09796 12 VIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 93 AKLAARQNMKWHEQMISHFAEIFFPLLPALIsGGLILGFRNVIGDlpmsngqtLAQMHPSLQTAYDFLWLIGEAIFFYLP 172
Cdd:PRK09796 92 VGKPKLTLRRIGAGILDALIGTMSPLIPAII-GGSMVKLLAMILE--------MSGVLTKGSPTLTILNVIGDGAFFFLP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 173 VGICWSAVKKMGGTPILGIVLGVTLVSP---QLMNAYMLGQQVpevwNFGLFTIEKVGYQAQVIPALLAGLTLGFIETRL 249
Cdd:PRK09796 163 LMVAASAAIKFKTNMSLAIAIAGVLVHPsfiELMAKAAQGEHV----EFALIPVTAVKYTYTVIPALVMTWCLSYIERWV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 250 KRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAfAVRHLLTGSFAPIGAALFGFLYAPLVITGVHQTTLAID 329
Cdd:PRK09796 239 DRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAIS-ALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTI 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 330 MQMIQSMGGTP-VWPMIALSNIAQASAVVGIIICSRKAKEREISVPAAISAYL-GVTEPAMYGINLKYRFPMLCAMIGSG 407
Cdd:PRK09796 318 IQTIAETGKEGmVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIASLISGF 397
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1011971823 408 IAGLLCGLYGVLANGIGVGGL---------PGILSIKPTFwGVYSIAMIISIVVPIIL 456
Cdd:PRK09796 398 ICGAVAGMAGLASHSMAAPGLftsvqffdpANPMSIVWVF-AVMALAVVLSFILTLLL 454
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
7-84 |
6.94e-29 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 108.39 E-value: 6.94e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1011971823 7 QQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEVGDYYEALLATTG 84
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
7-81 |
1.32e-26 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 102.12 E-value: 1.32e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1011971823 7 QQNIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELpMVKGCFTNAGQFQVVIGTEVGDYYEALLA 81
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEK 74
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
113-407 |
7.49e-25 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 104.35 E-value: 7.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 113 EIFFPLLPALISGGLILGfrnvIGDLPMSNGQTLAQMHPSLQTAYDFLWLIGEAIFFYLPVGICWSAVKKM-GGTPILGI 191
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLG----LGNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 192 VLGVTLVSPQLMNAY---MLGQQVPEVWNFGLFTIEKVGYQAQVIPALLAGLTLGFIETRLKRIVPDYLYLVIVPVCSLI 268
Cdd:pfam02378 78 AGLIGLLSFNLAAAIsvaLTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 269 LAVFLAHAIIGPFGRWIGDGVAFAVRH---LLTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMI-----QSMGGTP 340
Cdd:pfam02378 158 ITGFVTLLVIGPVLGLIWPAIQGGLNAlglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPiggsnPIANQQA 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1011971823 341 VWP----------MIALSNIAQASAVVGII-ICSRKAKEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGSG 407
Cdd:pfam02378 238 YGAgaahiltggfDVMFGGPGATLALYAAAfLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
31-112 |
3.18e-17 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 76.63 E-value: 3.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 31 TRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTE-VGDYYEA---LLATTGQKS-ADKEQAKLAARQNMKWHE 105
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGnVNKVDACitrLRVGVADVSkVDDAVLKKLGAHGVNPLQ 80
|
....*..
gi 1011971823 106 QMISHFA 112
Cdd:TIGR00826 81 RAVQVIS 87
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
12-42 |
1.07e-12 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 62.00 E-value: 1.07e-12
10 20 30
....*....|....*....|....*....|.
gi 1011971823 12 KLIELVGGRDNIATVSHCITRLRFVLNDPAK 42
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
12-83 |
7.18e-11 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 63.51 E-value: 7.18e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1011971823 12 KLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTE-VGDYYE---ALLATT 83
Cdd:PRK14905 280 QLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAGiVEKIHEemkALLARE 355
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
9-72 |
1.63e-04 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 43.95 E-value: 1.63e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1011971823 9 NIDKLIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEV 72
Cdd:PRK10110 451 NVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQV 514
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
4-69 |
2.64e-04 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 39.65 E-value: 2.64e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1011971823 4 KIEQQNIDKL------------IELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPmVKGCFTNAGQFQVVIG 69
Cdd:TIGR00826 12 KADEEAIAAGegvkgvftaagqIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLG-AHGVNPLQRAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
13-79 |
1.26e-03 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 39.69 E-value: 1.26e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1011971823 13 LIELVGGRDNIATVSHCITRLRFVLNDPAKANPKAIEELPMVKGCFTNAGQFQVVIGTEVGDYYEAL 79
Cdd:PRK09702 76 ILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQL 142
|
|
| PRK11404 |
PRK11404 |
PTS fructose-like transporter subunit IIBC; |
230-466 |
6.84e-03 |
|
PTS fructose-like transporter subunit IIBC;
Pssm-ID: 183120 [Multi-domain] Cd Length: 482 Bit Score: 38.70 E-value: 6.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 230 AQVIPALLAGLTLG-----FIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRWIGDGVAFAVRHLLTgSFAPI 304
Cdd:PRK11404 227 AGFLGAVVLGLAIGyfvfwFRKVRLGKALQPLLGSMLIPFVTLLVFGVLTYYVIGPVMSDLMGGLLHFLNTIPP-SMKFA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 305 GAALFGFLYAPLVITGVHQTTLAIDMQMIQSmgGTPVWPMIA--LSNIAQASAVVGIIICSR--KAKEREISVPAAISAY 380
Cdd:PRK11404 306 AAFLVGAMLAFDMGGPINKTAWFFCFSLLEK--HIYDWYAIVgvVALMPPVAAGLATFIAPKlfTRQEKEAASSAIVVGA 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1011971823 381 LGVTEPAMyGINLKYRFPMLCA-MIGSGIAGLLCGLYGV--LANGIGV-GGLPGILSIKPTFWGVYSIAMIISIVVPIIL 456
Cdd:PRK11404 384 TVATEPAI-PYALAAPLPMITAnTLAGGITGVLVIAFGIkrLAPGLGIfDPLIGLMSPVGSFYLVLAIGLALNISFIIVL 462
|
250
....*....|
gi 1011971823 457 TMVVYKRKQK 466
Cdd:PRK11404 463 KGLWLRRKAK 472
|
|
| |
