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Conserved domains on  [gi|1016098846|ref|WP_062941029|]
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ABC transporter permease [Rhizobium leguminosarum]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-319 3.30e-130

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 373.25  E-value: 3.30e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNlpMSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGNLG 80
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR--ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  81 YSIkRLDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV 160
Cdd:COG0601    79 TSF-VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 161 RLHWMPSGGMLTPGEEFsvGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA 240
Cdd:COG0601   158 KLGWLPVSGRVSPWEDF--LDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNA 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1016098846 241 LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLKVG 319
Cdd:COG0601   236 LIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-319 3.30e-130

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 373.25  E-value: 3.30e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNlpMSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGNLG 80
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR--ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  81 YSIkRLDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV 160
Cdd:COG0601    79 TSF-VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 161 RLHWMPSGGMLTPGEEFsvGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA 240
Cdd:COG0601   158 KLGWLPVSGRVSPWEDF--LDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNA 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1016098846 241 LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLKVG 319
Cdd:COG0601   236 LIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-317 6.17e-79

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 242.70  E-value: 6.17e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNLPMSPSDLadLRRNLGLDQPLPAQYLGWLQQALTGNLG 80
Cdd:PRK15081    1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVAL--VRQQLGLDQPLPHQFWHYISNALQGDFG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  81 YSIkRLDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV 160
Cdd:PRK15081   79 TSM-VSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 161 RLHWMPSGGmltpgeefsvGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA 240
Cdd:PRK15081  158 ELGWLPTVG----------ADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNA 227

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1016098846 241 LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLK 317
Cdd:PRK15081  228 MIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-317 4.86e-69

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 217.71  E-value: 4.86e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYID-PNLPMSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGNL 79
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRlSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  80 GYSIKRlDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFS 159
Cdd:TIGR02789  81 GISYIS-DRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 160 VRLHWMPSGGMLTPGeefsvgdllhHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRN 239
Cdd:TIGR02789 160 VYLNLLPTNGAGTWQ----------HLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRN 229

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1016098846 240 ALLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLK 317
Cdd:TIGR02789 230 AILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIR 307
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 116-318 1.84e-27

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 105.46  E-value: 1.84e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 116 GITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSVrlhwmpsggmltpgeefsvgDLLHHLILPAALLSV 195
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL--------------------SILGHGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 196 AQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNALLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLL 275
Cdd:pfam00528  61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLL 140

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1016098846 276 VDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLKV 318
Cdd:pfam00528 141 IEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-307 1.00e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.16  E-value: 1.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  98 IGPTVLLMGTALAFAIVAGITCGVIgAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSVRLHWmpsggmltpgeef 177
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGII-LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 178 svgDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNALLPIVTLIGSTIGLAIG 257
Cdd:cd06261    67 ---GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALG 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1016098846 258 GAIFIESVFN----WPGMGLLLVDAVQtrdypviMGATLVIGACVIVVNLLTDI 307
Cdd:cd06261   144 EFALVSFLGGgeapGPGTGLLLIFAIL-------FPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-319 3.30e-130

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 373.25  E-value: 3.30e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNlpMSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGNLG 80
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR--ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  81 YSIkRLDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV 160
Cdd:COG0601    79 TSF-VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 161 RLHWMPSGGMLTPGEEFsvGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA 240
Cdd:COG0601   158 KLGWLPVSGRVSPWEDF--LDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNA 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1016098846 241 LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLKVG 319
Cdd:COG0601   236 LIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-317 6.17e-79

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 242.70  E-value: 6.17e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNLPMSPSDLadLRRNLGLDQPLPAQYLGWLQQALTGNLG 80
Cdd:PRK15081    1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVAL--VRQQLGLDQPLPHQFWHYISNALQGDFG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  81 YSIkRLDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV 160
Cdd:PRK15081   79 TSM-VSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 161 RLHWMPSGGmltpgeefsvGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA 240
Cdd:PRK15081  158 ELGWLPTVG----------ADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNA 227

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1016098846 241 LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLK 317
Cdd:PRK15081  228 MIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-319 8.18e-70

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 219.57  E-value: 8.18e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYID-PNLPMSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGNL 79
Cdd:PRK10352    1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRlSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  80 GYSIKRlDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFS 159
Cdd:PRK10352   81 GISFAT-QRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 160 VRLHWMPSGGMLTpgeefsvgdlLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRN 239
Cdd:PRK10352  160 VYLQWLPAMGYGG----------WQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRN 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 240 ALLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLKVG 319
Cdd:PRK10352  230 ASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRH 309
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-317 4.86e-69

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 217.71  E-value: 4.86e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYID-PNLPMSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGNL 79
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRlSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  80 GYSIKRlDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFS 159
Cdd:TIGR02789  81 GISYIS-DRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 160 VRLHWMPSGGMLTPGeefsvgdllhHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRN 239
Cdd:TIGR02789 160 VYLNLLPTNGAGTWQ----------HLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRN 229

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1016098846 240 ALLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLK 317
Cdd:TIGR02789 230 AILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIR 307
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-317 6.79e-67

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 212.75  E-value: 6.79e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIdAYIDPNLPMSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGNLG 80
Cdd:PRK10914    1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPV-MIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  81 YSIKRlDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV 160
Cdd:PRK10914   80 ISLKS-RIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 161 RLHWMPSGGMLTP---------------------GEEFSVGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVR 219
Cdd:PRK10914  159 HWNLTPVSGRVSDmvflddsnpltgfmlidtaiwGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIR 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 220 TARAKGVREFWVITKHALRNALLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVI 299
Cdd:PRK10914  239 TARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMII 318

                         330
                  ....*....|....*...
gi 1016098846 300 VVNLLTDITYAVVDPRLK 317
Cdd:PRK10914  319 LVNLLVDLLYGVVNPRIR 336
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-317 1.36e-62

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 200.68  E-value: 1.36e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAyidpNLPMSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGNLG 80
Cdd:PRK09471    1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTG----ERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFG 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  81 YSIKRLDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV 160
Cdd:PRK09471   77 PSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAI 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 161 RLHWMPSGGMLtpgeefsvGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA 240
Cdd:PRK09471  157 TLHWLPGGGWN--------GGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPA 228

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1016098846 241 LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLK 317
Cdd:PRK09471  229 LLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-315 2.25e-39

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 141.86  E-value: 2.25e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYI-------------------DPNLP--------------MSP 47
Cdd:COG4174     1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIaqlqgtgggatgrisggggDAGGGaaagggskyrgargLDP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  48 SDLADLRRNLGLDQPLPAQYLGWLQQALTGNLGYSIKRlDQPVLGLVLSRIgPTVLLMG---TALAFAIvaGITCGVIGA 124
Cdd:COG4174    81 EFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFR-DISVIDLILEKL-PVSISLGlwsTLLTYLI--SIPLGIRKA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 125 VRRNSLADLSLSVVALAGISSPAFLSALIGLYIFS--VRLHWMPSGGMLTPG-EEFS----VGDLLHHLILPAALLSVAQ 197
Cdd:COG4174   157 VRDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPLRGLTSDNwDQLSwwgkILDYLWHLTLPVTAMVIGG 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 198 AALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNALLPIVT-LIGSTIGLAIGGAIFIESVFNWPGMGLLLV 276
Cdd:COG4174   237 FATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAgFPAAFIGAFFTGSLLIETIFSLDGLGLLGF 316

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1016098846 277 DAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPR 315
Cdd:COG4174   317 EAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPR 355
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-314 4.35e-39

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 140.21  E-value: 4.35e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLrltpgdpidaYIDPNLPMSPSDLADlrrnlgldqplpaQYLGWLQQALTGNLG 80
Cdd:PRK15110    1 MIIFTLRRLLLLIVTLFLLTLVGFSLS----------YFTPHAPLQGASLWD-------------AWVFWFNGLLHWDFG 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  81 YSIKRlDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV 160
Cdd:PRK15110   58 VSSIN-GQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSL 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 161 RLHWMPSGGML---------------------TPGEEFSVGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVR 219
Cdd:PRK15110  137 TLGWLPVSGRFdllyevkpvtgfalidawlsdSPWRDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVK 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 220 TARAKGVREFWVITKHALRNALLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVI 299
Cdd:PRK15110  217 AAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVI 296

                         330
                  ....*....|....*
gi 1016098846 300 VVNLLTDITYAVVDP 314
Cdd:PRK15110  297 IVNVLSDILGAMANP 311
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-316 2.37e-29

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 115.23  E-value: 2.37e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYI-----------------------DPNLPMSPSD-------- 49
Cdd:PRK15133    1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIaaiefgqagglpgaggegvrashAQTGVGNISDsnyrggrg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  50 -----LADLRRNLGLDQPLPAQYLGWLQQALTGNLGYSIKRlDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGA 124
Cdd:PRK15133   81 ldpevIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFR-SASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 125 VRRNSLADLSLSVVALAGISSPAFLSALIGLYIFS--VRLHWMPSGGMLTPgeEFS-------VGDLLHHLILPAALLSV 195
Cdd:PRK15133  160 VRNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSA--NFDslpwyqkITDYLWHITLPVLATVI 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 196 AQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNALLPIVTLIGST-IGLAIGGAIFIESVFNWPGMGLL 274
Cdd:PRK15133  238 GGFAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATfISMFFTGSLLIEVMFSLNGLGLL 317

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1016098846 275 LVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRL 316
Cdd:PRK15133  318 GYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 116-318 1.84e-27

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 105.46  E-value: 1.84e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 116 GITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSVrlhwmpsggmltpgeefsvgDLLHHLILPAALLSV 195
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL--------------------SILGHGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 196 AQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNALLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLL 275
Cdd:pfam00528  61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLL 140

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1016098846 276 VDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRLKV 318
Cdd:pfam00528 141 IEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-307 1.00e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.16  E-value: 1.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  98 IGPTVLLMGTALAFAIVAGITCGVIgAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSVRLHWmpsggmltpgeef 177
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGII-LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 178 svgDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNALLPIVTLIGSTIGLAIG 257
Cdd:cd06261    67 ---GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALG 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1016098846 258 GAIFIESVFN----WPGMGLLLVDAVQtrdypviMGATLVIGACVIVVNLLTDI 307
Cdd:cd06261   144 EFALVSFLGGgeapGPGTGLLLIFAIL-------FPGDLGVAAAVALILLLLSL 190
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-104 6.05e-12

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 61.47  E-value: 6.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   1 MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNLpmSPSDLADLRRNLGLDQPLPAQYLGWLQQALTGN-- 78
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKNC--TPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdf 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1016098846  79 ----------LGYSIkRLDQPVLGLVLSRIGPTVLL 104
Cdd:pfam19300  79 gavghcpapcLGYSF-ANNEPVWDTIMDRFPTTLSL 113
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 7-306 1.03e-06

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 1.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846   7 RRLVIGIGMLVALSMLIFLLLRLTPGDPIDayIDPNLPMSPsdladlrrnlgldqPLPAQYLGwlqqalTGNLGYSIkrl 86
Cdd:COG1173    16 PLAVIGLVILLLLVLLALFAPLLAPYDPTA--QDLAARLQP--------------PSAAHWLG------TDQLGRDV--- 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846  87 dqpvlglvLSRI---GPTVLLMG-TALAFAIVAGITCGVIGAVRRnSLADLSLSVVALAGISSPAFLSALIGLYIFSvrl 162
Cdd:COG1173    71 --------LSRLlygARISLLVGlLAVLIALVIGVLLGLLAGYFG-GWVDAVLMRLVDVLLAFPSLLLAIALVAVLG--- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016098846 163 hwmpsGGMLTpgeefsvgdllhhLILPAALLSVAQAAlimRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNALL 242
Cdd:COG1173   139 -----PGLLN-------------VILALGLTGWPGYA---RLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLP 197

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1016098846 243 PIVTLigstIGLAIGGAIFIESV---------FNWPGMGLLLVDAVQT-RDYP-VIMGATLVIGACVIVVNLLTD 306
Cdd:COG1173   198 PLIVQ----ATLGIASAILAEAGlsflglgvqPPTPSWGTMLSEGRNYlLTAPwLALFPGLAIVLTVLAFNLLGD 268
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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