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Conserved domains on  [gi|1021253285|ref|WP_063285034|]
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MULTISPECIES: IS256 family transposase, partial [Bacillati]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transposase_mut super family cl27632
Transposase, Mutator family;
3-59 8.32e-26

Transposase, Mutator family;


The actual alignment was detected with superfamily member pfam00872:

Pssm-ID: 474953  Cd Length: 380  Bit Score: 96.68  E-value: 8.32e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1021253285   3 YTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIY 59
Cdd:pfam00872 324 TAFPEQIWRRIWSTNPIERLNKEIRRRTRVVGIFPNEESALRLLGAVLMELHDEWKE 380
 
Name Accession Description Interval E-value
Transposase_mut pfam00872
Transposase, Mutator family;
3-59 8.32e-26

Transposase, Mutator family;


Pssm-ID: 307151  Cd Length: 380  Bit Score: 96.68  E-value: 8.32e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1021253285   3 YTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIY 59
Cdd:pfam00872 324 TAFPEQIWRRIWSTNPIERLNKEIRRRTRVVGIFPNEESALRLLGAVLMELHDEWKE 380
IS285 COG3328
Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];
12-68 9.58e-19

Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];


Pssm-ID: 442557  Cd Length: 400  Bit Score: 77.54  E-value: 9.58e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1021253285  12 RLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFD 68
Cdd:COG3328   332 HIYTTNPIERLNREIRRRTKVVGIFPNEEAALKLVYLALQEASKKWTMGIRRWKGME 388
transpos_IS256 NF033543
IS256 family transposase; Members of this family belong to the branch of the IS256-like family ...
 12-62 4.47e-18

IS256 family transposase; Members of this family belong to the branch of the IS256-like family of transposases that includes the founding member. It excludes the IS1249 group.


Pssm-ID: 468074 [Multi-domain]  Cd Length: 406  Bit Score: 75.72  E-value: 4.47e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1021253285  12 RLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSR 62
Cdd:NF033543  334 SIYTTNAIESLNAEIRRRTKVVGIFPNDESALRLLYALLLEAEKKWRRRRG 384
 
Name Accession Description Interval E-value
Transposase_mut pfam00872
Transposase, Mutator family;
3-59 8.32e-26

Transposase, Mutator family;


Pssm-ID: 307151  Cd Length: 380  Bit Score: 96.68  E-value: 8.32e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1021253285   3 YTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIY 59
Cdd:pfam00872 324 TAFPEQIWRRIWSTNPIERLNKEIRRRTRVVGIFPNEESALRLLGAVLMELHDEWKE 380
IS285 COG3328
Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];
12-68 9.58e-19

Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];


Pssm-ID: 442557  Cd Length: 400  Bit Score: 77.54  E-value: 9.58e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1021253285  12 RLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFD 68
Cdd:COG3328   332 HIYTTNPIERLNREIRRRTKVVGIFPNEEAALKLVYLALQEASKKWTMGIRRWKGME 388
transpos_IS256 NF033543
IS256 family transposase; Members of this family belong to the branch of the IS256-like family ...
 12-62 4.47e-18

IS256 family transposase; Members of this family belong to the branch of the IS256-like family of transposases that includes the founding member. It excludes the IS1249 group.


Pssm-ID: 468074 [Multi-domain]  Cd Length: 406  Bit Score: 75.72  E-value: 4.47e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1021253285  12 RLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSR 62
Cdd:NF033543  334 SIYTTNAIESLNAEIRRRTKVVGIFPNDESALRLLYALLLEAEKKWRRRRG 384
Rve COG3316
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
17-46 5.56e-04

Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];


Pssm-ID: 442545 [Multi-domain]  Cd Length: 235  Bit Score: 36.04  E-value: 5.56e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1021253285  17 NLIERLNQEVRRREKIIRIFPNQTSANRLI 46
Cdd:COG3316   164 NRIERDHRTLKRRERPMRGFKSFRTAQRFL 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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