|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
26-597 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 706.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 26 RRLVQWLLADGVITAEEAQRTVArcsQAESTQHPLVRLANvgmaragDGRALDIEELTQYLATRSGLAYLRIDPLRVDAg 105
Cdd:COG2804 7 LRLGDLLVEAGLISEEQLLAALA---EQKKTGKPLGELLV-------ELGLVTEELLAEALAEQLGLPFVDLDELEIDP- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 106 RVGEIMSASYAERHKVLPVQVSPQEVVVATAEPFIDDWVAEVERQARRKVRRVLASPLDLKRYTGEFFALAKSVRAAEKA 185
Cdd:COG2804 76 EVLELLPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSIEELLEE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 186 GGAASAASFEQLVELgnsskQLDANDQGVVRVVDWLWQYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNA 265
Cdd:COG2804 156 LAEDLTSEEEDLEDL-----LEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 266 MVSRVKLLGRMDVVEKRRPQDGRIKTRNpRGDEVEMRLSTLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRWNELV 345
Cdd:COG2804 231 LVSRIKIMANLDIAERRLPQDGRIKLRL-GGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLI 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 346 RRPHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVG 425
Cdd:COG2804 310 RRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVG 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 426 EIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVRTLCPQCKQRDEETsAATLA 505
Cdd:COG2804 390 EIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPD-PEELE 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 506 EAVRPWKLSGSYQPYKPVGCVECRMTGFRGRMGLYELLTVSEALKQQVHTSPSMDALRRQAVQDGMRPLRLAGALRVAEG 585
Cdd:COG2804 469 RLGLPPEELAPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQG 548
|
570
....*....|..
gi 1021306065 586 VTTLDEVMASTP 597
Cdd:COG2804 549 ITTLEEVLRVTG 560
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
26-596 |
1.69e-162 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 476.05 E-value: 1.69e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 26 RRLVQwllaDGVITAEEAQRtvARCSQAESTQHPLVRLANVGMaragdgraLDIEELTQYLATRSGLAYLRIDPLRVDAG 105
Cdd:TIGR02538 4 RILVK----AGLLTETQAQA--ALEEAQASGQPLVQYLIQNGL--------LDPKQLAEFLSREFGVPLLDLNAFDPDAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 106 RVGeIMSASYAERHKVLPVQVSPQEVVVATAEPFIDDWVAEVERQARRKVRRVLASPLDLKRYTGEFFALAKSVRAAEKA 185
Cdd:TIGR02538 70 PVQ-LVSEELIQKHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLAKELGD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 186 GGAASAASFE---QLVELGNSSKQLDANDQG-VVRVVDWLWQYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMG 261
Cdd:TIGR02538 149 EDIGDLEELDvdaIDDEGPDDIEQDAVDDDApIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 262 VLNAMVSRVKLLGRMDVVEKRRPQDGRIKTRNPRGDEVEMRLSTLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRW 341
Cdd:TIGR02538 229 LANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALF 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 342 NELVRRPHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDI 421
Cdd:TIGR02538 309 LEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDI 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 422 IMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVRTLCPQCKQRDEETSA 501
Cdd:TIGR02538 389 IMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAE 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 502 ATLAEAVRPWKLsGSYQPYKPVGCVECRMTGFRGRMGLYELLTVSEALKQQVHTSPSMDALRRQAVQDGMRPLRLAGALR 581
Cdd:TIGR02538 469 ALLELGFTQEDL-ADLKLYGPVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLK 547
|
570
....*....|....*
gi 1021306065 582 VAEGVTTLDEVMAST 596
Cdd:TIGR02538 548 VKQGVTSLEEVLRVT 562
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
208-592 |
9.02e-127 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 380.81 E-value: 9.02e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 208 DANDQGVVRVVDWLWQYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNAMVSRVKLLGRMDVVEKRRPQDG 287
Cdd:PRK10436 78 QEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQDG 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 288 RIkTRNPRGDEVEMRLSTLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRWNELVRRPHGIILVTGPTGSGKTTTLY 367
Cdd:PRK10436 158 QF-TVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLY 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 368 STLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVF 447
Cdd:PRK10436 237 SALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 448 STLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVRTLCPQCKQRDEETsaATLAEAVRPwklsGSYQPYKPVGCVE 527
Cdd:PRK10436 317 STLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASEP--IHLPPNIWP----GPLPHWQAVGCEH 390
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1021306065 528 CrMTGFRGRMGLYELLTVSEALKQQVHTSPSMDALRRQAVQDGMRPLRLAGALRVAEGVTTLDEV 592
Cdd:PRK10436 391 C-YHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEEL 454
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
225-488 |
4.16e-104 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 315.38 E-value: 4.16e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 225 AFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNAMVSRVKLLGRMDVVEKRRPQDGRIKTRnPRGDEVEMRLS 304
Cdd:pfam00437 7 ALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLR-IGGKGVRVRVS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 305 TLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRWNELVRRPHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVE 384
Cdd:pfam00437 86 TLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDENIVTVE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 385 DPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLME 464
Cdd:pfam00437 166 DPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQD 245
|
250 260
....*....|....*....|....
gi 1021306065 465 LGVPPYLINATLLGVLAQRLVRTL 488
Cdd:pfam00437 246 MGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
223-487 |
4.85e-94 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 289.35 E-value: 4.85e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 223 QYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNAMVSRVKLLGRMDVVEKRRPQDGRIKTRNPrGDEVEMR 302
Cdd:NF041000 5 EEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELN-EQQISLR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 303 LSTLPTAFG-EKLVMRIFDPDNTVKDLDalgFTSHDAQRWNELVRRPHGIILVTGPTGSGKTTTLYSTLKRVATEAvNVS 381
Cdd:NF041000 84 LSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLALNK-QVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 382 TVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSR 461
Cdd:NF041000 160 TIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGVIYR 239
|
250 260
....*....|....*....|....*.
gi 1021306065 462 LMELGVPPYLINATLLGVLAQRLVRT 487
Cdd:NF041000 240 LLELGISKEELEQTLIGISYQRLIPT 265
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
339-486 |
7.61e-83 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 256.26 E-value: 7.61e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 339 QRWNELVRRPHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQD 418
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1021306065 419 PDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVR 486
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVG 148
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
348-427 |
1.55e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.28 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 348 PHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEG------LRSLMRQ-DPD 420
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGelrlrlALALARKlKPD 80
|
....*..
gi 1021306065 421 IIMVGEI 427
Cdd:smart00382 81 VLILDEI 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
26-597 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 706.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 26 RRLVQWLLADGVITAEEAQRTVArcsQAESTQHPLVRLANvgmaragDGRALDIEELTQYLATRSGLAYLRIDPLRVDAg 105
Cdd:COG2804 7 LRLGDLLVEAGLISEEQLLAALA---EQKKTGKPLGELLV-------ELGLVTEELLAEALAEQLGLPFVDLDELEIDP- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 106 RVGEIMSASYAERHKVLPVQVSPQEVVVATAEPFIDDWVAEVERQARRKVRRVLASPLDLKRYTGEFFALAKSVRAAEKA 185
Cdd:COG2804 76 EVLELLPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSIEELLEE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 186 GGAASAASFEQLVELgnsskQLDANDQGVVRVVDWLWQYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNA 265
Cdd:COG2804 156 LAEDLTSEEEDLEDL-----LEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 266 MVSRVKLLGRMDVVEKRRPQDGRIKTRNpRGDEVEMRLSTLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRWNELV 345
Cdd:COG2804 231 LVSRIKIMANLDIAERRLPQDGRIKLRL-GGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLI 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 346 RRPHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVG 425
Cdd:COG2804 310 RRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVG 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 426 EIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVRTLCPQCKQRDEETsAATLA 505
Cdd:COG2804 390 EIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPD-PEELE 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 506 EAVRPWKLSGSYQPYKPVGCVECRMTGFRGRMGLYELLTVSEALKQQVHTSPSMDALRRQAVQDGMRPLRLAGALRVAEG 585
Cdd:COG2804 469 RLGLPPEELAPLTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQG 548
|
570
....*....|..
gi 1021306065 586 VTTLDEVMASTP 597
Cdd:COG2804 549 ITTLEEVLRVTG 560
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
26-596 |
1.69e-162 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 476.05 E-value: 1.69e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 26 RRLVQwllaDGVITAEEAQRtvARCSQAESTQHPLVRLANVGMaragdgraLDIEELTQYLATRSGLAYLRIDPLRVDAG 105
Cdd:TIGR02538 4 RILVK----AGLLTETQAQA--ALEEAQASGQPLVQYLIQNGL--------LDPKQLAEFLSREFGVPLLDLNAFDPDAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 106 RVGeIMSASYAERHKVLPVQVSPQEVVVATAEPFIDDWVAEVERQARRKVRRVLASPLDLKRYTGEFFALAKSVRAAEKA 185
Cdd:TIGR02538 70 PVQ-LVSEELIQKHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLAKELGD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 186 GGAASAASFE---QLVELGNSSKQLDANDQG-VVRVVDWLWQYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMG 261
Cdd:TIGR02538 149 EDIGDLEELDvdaIDDEGPDDIEQDAVDDDApIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 262 VLNAMVSRVKLLGRMDVVEKRRPQDGRIKTRNPRGDEVEMRLSTLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRW 341
Cdd:TIGR02538 229 LANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALF 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 342 NELVRRPHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDI 421
Cdd:TIGR02538 309 LEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDI 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 422 IMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVRTLCPQCKQRDEETSA 501
Cdd:TIGR02538 389 IMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAE 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 502 ATLAEAVRPWKLsGSYQPYKPVGCVECRMTGFRGRMGLYELLTVSEALKQQVHTSPSMDALRRQAVQDGMRPLRLAGALR 581
Cdd:TIGR02538 469 ALLELGFTQEDL-ADLKLYGPVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLK 547
|
570
....*....|....*
gi 1021306065 582 VAEGVTTLDEVMAST 596
Cdd:TIGR02538 548 VKQGVTSLEEVLRVT 562
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
114-596 |
2.23e-161 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 470.32 E-value: 2.23e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 114 SYAERHKVLPVQVSPQEVVVATAEPFIDDWVAEVERQARRKVRRVLASPLDLKRYTGEFFALAKSVRAAEKAGGAASAAS 193
Cdd:TIGR02533 7 GFAKQSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVEEIEGEDDL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 194 FEQLVELGNSSKQLDANDQG-VVRVVDWLWQYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNAMVSRVKL 272
Cdd:TIGR02533 87 SALELDEPKIEDLLDLEDDApVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVSRVKI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 273 LGRMDVVEKRRPQDGRIKTRnPRGDEVEMRLSTLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRWNELVRRPHGII 352
Cdd:TIGR02533 167 MAKLNIAEKRLPQDGRISLR-VGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGII 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 353 LVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVGEIRDLAT 432
Cdd:TIGR02533 246 LVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLET 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 433 AEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVRTLCPQCKQRDEETSAATLAEAVRPwk 512
Cdd:TIGR02533 326 AQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGISP-- 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 513 lSGSYQPYKPVGCVECRMTGFRGRMGLYELLTVSEALKQQVHTSPSMDALRRQAVQDGMRPLRLAGALRVAEGVTTLDEV 592
Cdd:TIGR02533 404 -EGPINLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEV 482
|
....
gi 1021306065 593 MAST 596
Cdd:TIGR02533 483 LRVT 486
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
208-592 |
9.02e-127 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 380.81 E-value: 9.02e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 208 DANDQGVVRVVDWLWQYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNAMVSRVKLLGRMDVVEKRRPQDG 287
Cdd:PRK10436 78 QEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQDG 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 288 RIkTRNPRGDEVEMRLSTLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRWNELVRRPHGIILVTGPTGSGKTTTLY 367
Cdd:PRK10436 158 QF-TVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLY 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 368 STLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVF 447
Cdd:PRK10436 237 SALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 448 STLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVRTLCPQCKQRDEETsaATLAEAVRPwklsGSYQPYKPVGCVE 527
Cdd:PRK10436 317 STLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQASEP--IHLPPNIWP----GPLPHWQAVGCEH 390
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1021306065 528 CrMTGFRGRMGLYELLTVSEALKQQVHTSPSMDALRRQAVQDGMRPLRLAGALRVAEGVTTLDEV 592
Cdd:PRK10436 391 C-YHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEEL 454
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
225-488 |
4.16e-104 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 315.38 E-value: 4.16e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 225 AFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNAMVSRVKLLGRMDVVEKRRPQDGRIKTRnPRGDEVEMRLS 304
Cdd:pfam00437 7 ALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLR-IGGKGVRVRVS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 305 TLPTAFGEKLVMRIFDPDNTVKDLDALGFTSHDAQRWNELVRRPHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVE 384
Cdd:pfam00437 86 TLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDENIVTVE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 385 DPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLME 464
Cdd:pfam00437 166 DPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQD 245
|
250 260
....*....|....*....|....
gi 1021306065 465 LGVPPYLINATLLGVLAQRLVRTL 488
Cdd:pfam00437 246 MGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
223-487 |
4.85e-94 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 289.35 E-value: 4.85e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 223 QYAFDQRASDIHMEPRREQGVIRFRIDGVLHPVYQVPMGVLNAMVSRVKLLGRMDVVEKRRPQDGRIKTRNPrGDEVEMR 302
Cdd:NF041000 5 EEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELN-EQQISLR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 303 LSTLPTAFG-EKLVMRIFDPDNTVKDLDalgFTSHDAQRWNELVRRPHGIILVTGPTGSGKTTTLYSTLKRVATEAvNVS 381
Cdd:NF041000 84 LSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLALNK-QVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 382 TVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSR 461
Cdd:NF041000 160 TIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGVIYR 239
|
250 260
....*....|....*....|....*.
gi 1021306065 462 LMELGVPPYLINATLLGVLAQRLVRT 487
Cdd:NF041000 240 LLELGISKEELEQTLIGISYQRLIPT 265
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
339-486 |
7.61e-83 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 256.26 E-value: 7.61e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 339 QRWNELVRRPHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQD 418
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1021306065 419 PDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELGVPPYLINATLLGVLAQRLVR 486
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVG 148
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
223-487 |
9.88e-57 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 194.54 E-value: 9.88e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 223 QYAFDQRASDIHMEPRReqgVIRFRIDGVLHPVYQVPMG--VLNAMVSRvkLLG--RMDVVEKRR--------PQDGRIk 290
Cdd:COG2805 10 KLAVEQGASDLHLTVGS---PPMLRIDGELVPLDDPPLTpeDLEALLKE--ILTeeQRERLEEEGeldfsyslPGLGRF- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 291 trnprgdevemRLSTLPTAFGEKLVMRIFDpdNTVKDLDALGFtsHDAQRwnELVRRPHGIILVTGPTGSGKTTTLYSTL 370
Cdd:COG2805 84 -----------RVNIFRQRGGVAAVLRLIP--SEIPTLEELGL--PPVLK--ELAELPRGLVLVTGPTGSGKSTTLAAMI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 371 KRV-ATEAVNVSTVEDPIEMIEPS----FNQTQVQPQLDfGFTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTGHL 445
Cdd:COG2805 147 DYInETRAKHIITIEDPIEFVHKHkkslINQREVGRDTP-SFANALRAALREDPDVILVGEMRDLETIEAALTAAETGHL 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1021306065 446 VFSTLHTNDAPSAVSRLMELgVPPY--------LINaTLLGVLAQRLVRT 487
Cdd:COG2805 226 VFATLHTNSAAQTIDRIIDV-FPPEeqaqirsqLAE-SLRGVISQRLLPR 273
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
343-487 |
4.55e-47 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 164.63 E-value: 4.55e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 343 ELVRRPHGIILVTGPTGSGKTTTLYSTLKRV-ATEAVNVSTVEDPIEMIEPS----FNQTQVQpqLDF-GFTEGLRSLMR 416
Cdd:cd01131 15 DLALKPRGLVLVTGPTGSGKSTTLAAMIDYInETRSKHIITIEDPIEFVHKHkkslINQREVG--RDTeSFAAALRAALR 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1021306065 417 QDPDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELgVPPY-------LINATLLGVLAQRLVRT 487
Cdd:cd01131 93 EDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV-FPPEqqeqvriQLASSLRGVISQRLLPK 169
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
225-487 |
1.49e-43 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 159.02 E-value: 1.49e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 225 AFDQRASDIHMeprREQGVIRFRIDGVLHPVYQVP------MGVLNAMVS---RVKLLGRMDV-VEKRRPQDGRIktrnp 294
Cdd:TIGR01420 9 AVKLGASDIHL---TAGAPPAMRIDGDLVRIEFEPltpedtQKLAREILSekqREEFEENGELdFSFSLPGVGRF----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 295 RGDEVEMRLSTlptafgeKLVMRIFDpdNTVKDLDALGFtshdAQRWNELVRRPHGIILVTGPTGSGKTTTLYSTLKRV- 373
Cdd:TIGR01420 81 RVNAFYQRGGV-------ALVLRLIP--SKIPTFEELGL----PPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYIn 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 374 ATEAVNVSTVEDPIEMIEPS----FNQTQVQPQLDfGFTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVFST 449
Cdd:TIGR01420 148 KNKAYHIITIEDPIEYVHTNkrslINQREVGEDTL-SFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGT 226
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1021306065 450 LHTNDAPSAVSRLMELgVPPY-------LINATLLGVLAQRLVRT 487
Cdd:TIGR01420 227 LHTNSAAQTIERIIDV-FPAEeqeqirtQLAESLVAIISQRLLPK 270
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
343-488 |
4.41e-36 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 132.90 E-value: 4.41e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 343 ELVRRPhGIILVTGPTGSGKTTTLYSTLKRVATEAvNVSTVEDPIEMI---EPSFNQTQVQPQLDFGftEGLRSLMRQDP 419
Cdd:cd19477 5 DGIAIG-KNVIVCGGTGSGKTTYIKSILEFIPKEE-RIISIEDTEEIVfkhHKNYTQLFFGGNITSA--DCLKSCLRQRP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 420 DIIMVGEIRDlATAEMAVQAALTGH-LVFSTLHTNDAPSAVSRLMELGVP------------PYLINATLLGVLAQRLVR 486
Cdd:cd19477 81 DRIILGELRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SSSnsaarnikfeslIEGFKDLIDGIVHINHHK 159
|
..
gi 1021306065 487 TL 488
Cdd:cd19477 160 QC 161
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
350-487 |
9.79e-35 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 129.42 E-value: 9.79e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 350 GIILVTGPTGSGKTTTLYSTLKRVATEAV---NVSTVEDPIEMI-------EPSFNQTQVQPQLDfGFTEGLRSLMRQDP 419
Cdd:cd19516 12 GLVYVAGATGSGKSTLLAAIYRYILENDPpdrKIITYEDPIEFVydgikskHSIIVQSQIPRHFK-SFAKAVREALRRKP 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1021306065 420 DIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLMELgVPP-------YLINATLLGVLAQRLVRT 487
Cdd:cd19516 91 SLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISL-FPPeerdaaaYDLLSTLRFIIVQRLVRT 164
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
343-487 |
2.03e-29 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 119.82 E-value: 2.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 343 ELVRRPHGIILVTGPTGSGKTTTLYSTLK-RVATEAVNVSTVEDPIEMIEPS----FNQTQVqpqldfG-----FTEGLR 412
Cdd:COG5008 117 DLIMEKRGLVLFVGATGSGKSTTLAAMIDhRNENSSGHILTIEDPIEFVHKHkksiVTQREV------GvdtesYEVALK 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 413 SLMRQDPDIIMVGEIRDLATAEMAVQAALTGHLVFSTLHTNDAPSAVSR-------------LMELGVppylinaTLLGV 479
Cdd:COG5008 191 NALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRiinffpeerrpqlLMDLSL-------NLRAI 263
|
....*...
gi 1021306065 480 LAQRLVRT 487
Cdd:COG5008 264 VSQRLVPT 271
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
228-487 |
2.65e-24 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 104.89 E-value: 2.65e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 228 QRASDIHMEPRREQGVIRFridGVLHPVYQVPMGVLNAMVSRVKLLGR--MDVVEKRRPQDGRIKTRN--------PRGD 297
Cdd:TIGR02525 22 HEVSDIHLQGGSPIVVERH---GRQVPASSFPLDNLELERLVDEVFGPeiKPTVKSGAPVDRAIQLRGdengryglGRGE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 298 EVEMR-------LSTLPTAFGekLVMRIFDPDntVKDLDALGFtshDAQRWNELVRRpHGIILVTGPTGSGKTTTLYSTL 370
Cdd:TIGR02525 99 RVRFRcnfiqatIGKLETAIS--LTLRVIPSD--IPDLKQMGI---EPDLFNSLLPA-AGLGLICGETGSGKSTLAASIY 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 371 KRVATEAVN--VSTVEDPIEMIEPSFNQTQVQPQLDFG-----FTEGLRSLMRQDPDIIMVGEIRDLATAEMAVQAALTG 443
Cdd:TIGR02525 171 QHCGETYPDrkIVTYEDPIEYILGSPDDLLPPAQSQIGrdvdsFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSG 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1021306065 444 HLVFSTLHTNDAPSAVSRLMELgVPPYLINAT---LLGVL----AQRLVRT 487
Cdd:TIGR02525 251 HFCLGTLHVKSPGEAISRCLQM-YPPEMREAAafdLLSILqyiiVQRLLRT 300
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
349-487 |
3.53e-19 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 90.52 E-value: 3.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 349 HGIILVTGPTGSGKTTTLYSTLKRVATEAVNVsTVEDPIEMIEPSFNQTQVQPQLDFGFTEG-------LRSLMRQDPDI 421
Cdd:COG0630 290 GKSVLVAGGTASGKTTLLNALLSFIPPDAKIV-TIEDTRELNLPHENWISLVTRESFGGEEGdvtmfdlLKAALRQRPDY 368
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1021306065 422 IMVGEIRDlATAEMAVQAALTGHLVFSTLHTNDAPSAVSRLME--LGVPPYLINAtLLGVLAQRLVRT 487
Cdd:COG0630 369 IVVGEVRG-EEAYTLFQAMATGHGVLSTFHADSVESAINRLTSppINVPRTLLQA-LDLVVFQKRVRV 434
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
352-465 |
5.48e-16 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 76.04 E-value: 5.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 352 ILVTGPTGSGKTTTLYSTLK------RVAT-EAVN--VSTVEDPIEMIEPSFNQTQVQpqldFGFTEGLRSLMRQDPDII 422
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSfippdeRIVTiEDTRelQLPHPNVVHLLTRPGGGEKGE----VTMADLLKAALRMRPDRI 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1021306065 423 MVGEIRDLATAEMaVQAALTGHL-VFSTLHTNDAPSAVSRLMEL 465
Cdd:cd01130 91 IVGEVRGGEAYDM-LQAMNTGHPgSITTIHANSAEDAIDRLATL 133
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
75-178 |
1.65e-13 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 66.97 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 75 RALDIEELTQYLATRSGLAYLRIDPLRVDAgRVGEIMSASYAERHKVLPVQVSPQEVVVATAEPFIDDWVAEVERQARRK 154
Cdd:pfam05157 5 GLLSEEQLAQALAEQLGLPFVDLEALEIDP-ELLRLLPREFARRHRVLPLREDGGTLVVAVADPLDLALLDELRFLTGKR 83
|
90 100
....*....|....*....|....
gi 1021306065 155 VRRVLASPLDLKRYTGEFFALAKS 178
Cdd:pfam05157 84 VEPVLATPSDIRRALERLYGSEES 107
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
347-465 |
4.95e-09 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 58.21 E-value: 4.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 347 RPHGIILVTGPTGSGKTT----TLYSTLKRVATEAVNVstVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLMRQDPDII 422
Cdd:PRK13894 146 RAHRNILVIGGTGSGKTTlvnaIINEMVIQDPTERVFI--IEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRI 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1021306065 423 MVGEIR-----DLataemaVQAALTGHL-VFSTLHTNDAPSAVSRLMEL 465
Cdd:PRK13894 224 LVGEVRgpealDL------LMAWNTGHEgGAATLHANNAKAGLDRLKSL 266
|
|
| nfrB |
PRK11234 |
phage adsorption protein NrfB; |
16-160 |
7.08e-09 |
|
phage adsorption protein NrfB;
Pssm-ID: 236884 [Multi-domain] Cd Length: 727 Bit Score: 58.60 E-value: 7.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 16 PSNPSGPLDWRRLVQWLLADGVITAEEAQRTVARCSQAestqhplVRLANVGMARAgdgrALDIEELTQYLATRSGLAYL 95
Cdd:PRK11234 472 PSVTGDTRSLRPLGQILLENGVITEEQLDTALRNRVRG-------LRLGQSLLMQG----LISAEQLAQALAEQNGVAWE 540
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1021306065 96 RIDPLRVDAGRVGEiMSASYAERHKVLPVQVSPQEVVVATAEPFIDDWVAEVERQARRKVRRVLA 160
Cdd:PRK11234 541 SLDPWQIPSSLIAE-MPASVALHYAVLPLREEGDELIVASEDGISPVSLAALTRKLGRKVRYVIV 604
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
324-462 |
8.13e-09 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 57.36 E-value: 8.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 324 TVKDLDALGFTSHDAQRWNELVRRPHGI---ILVTGPTGSGKTTTLYSTLKRVATEAvNVSTVEDPIEMIEPSFNQTQ-- 398
Cdd:TIGR02788 116 TLSDNDEQLLELLDAGDIKEFLRLAIASrknIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHlf 194
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1021306065 399 ----VQPQLDFGFTEGLRSLMRQDPDIIMVGEIRDlATAEMAVQAALTGHL-VFSTLHTNDAPSAVSRL 462
Cdd:TIGR02788 195 yskgGQGLAKVTPKDLLQSCLRMRPDRIILGELRG-DEAFDFIRAVNTGHPgSITTLHAGSPEEAFEQL 262
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
317-462 |
1.26e-08 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 57.10 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 317 RIFDPDN-TVKDLDALGFTSHDAQRW-NELVRRPHGIiLVTGPTGSGKTTTLystlkRVATEAVNVS----TVEDPIEMi 390
Cdd:COG4962 149 RKFRKRPlTLEDLVALGSLTPEMAEFlRAAVRARLNI-LVSGGTGSGKTTLL-----NALSGFIPPDerivTIEDAAEL- 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 391 epSFNQTQV------QPQLdfgftEG-----LRSL----MRQDPDIIMVGEIRDLATAEMaVQAALTGHL-VFSTLHTND 454
Cdd:COG4962 222 --QLQHPHVvrletrPPNV-----EGagevtLRDLvrnaLRMRPDRIIVGEVRGAEALDM-LQAMNTGHDgSMSTLHANS 293
|
....*...
gi 1021306065 455 APSAVSRL 462
Cdd:COG4962 294 ARDALARL 301
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
338-465 |
2.27e-07 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 52.88 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 338 AQRWNelvrrphgiILVTGPTGSGKTTTLYSTLKRVATEAVNVSTV--EDPIEMIEPSFNQTQVQPQLDFGFTEGLRSLM 415
Cdd:PRK13833 142 DSRLN---------IVISGGTGSGKTTLANAVIAEIVASAPEDRLVilEDTAEIQCAAENAVALHTSDTVDMARLLKSTM 212
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1021306065 416 RQDPDIIMVGEIRDLAtAEMAVQAALTGHL-VFSTLHTNDAPSAVSRLMEL 465
Cdd:PRK13833 213 RLRPDRIIVGEVRDGA-ALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQL 262
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
284-465 |
2.15e-06 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 49.90 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 284 PQDGRIKTRNPRGDEVEMRLStlPTAFGEKLVMRIFDPDNTVKDLDALGfTSHDAQRWNELVRRPHG------------- 350
Cdd:PRK13851 71 PRNPLCATELPGGERLQICLP--PTVPSGTVSLTIRRPSSRVSELKEVS-SRYDASRWNQWQERRKRrdqldeailrhyd 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 351 ----------------IILVTGPTGSGKtTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEG---- 410
Cdd:PRK13851 148 ngdleaflhacvvgrlTMLLCGPTGSGK-TTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAvtae 226
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1021306065 411 --LRSLMRQDPDIIMVGEIRDLAtAEMAVQAALTGHL-VFSTLHTNDAPSAVSRLMEL 465
Cdd:PRK13851 227 hlLQASLRMRPDRILLGEMRDDA-AWAYLSEVVSGHPgSISTIHGANPVQGFKKLFSL 283
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
352-469 |
9.57e-04 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 41.67 E-value: 9.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 352 ILVTGPTGSGKTTTLYSTLKRVATEAvNVSTVEDPIEMIEPSF-NQTQV------QPQLDFGFTEGLRSLMRQDPDIIMV 424
Cdd:PRK13900 163 IIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSNHpNRVHLlaskggQGRAKVTTQDLIEACLRLRPDRIIV 241
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1021306065 425 GEIRDlATAEMAVQAALTGHL-VFSTLHTNDAPSAVSRL----ME--LGVPP 469
Cdd:PRK13900 242 GELRG-AEAFSFLRAINTGHPgSISTLHADSPAMAIEQLklmvMQagLGMPP 292
|
|
| nfrB |
PRK15489 |
glycosyl transferase family protein; |
26-160 |
1.22e-03 |
|
glycosyl transferase family protein;
Pssm-ID: 237974 [Multi-domain] Cd Length: 703 Bit Score: 42.04 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 26 RRLVQWLLADGVITAEEAQRTVArcsQAESTQHPLVR-LANVGMaragdgraLDIEELTQYLATRSGLAYLRIDplRVDA 104
Cdd:PRK15489 491 RRLGELLLTWQAVTPEQLQAALA---EQQTRGKPLGRiLLSQGW--------LDDETLAEAIAFQADLPRVSLD--NVVL 557
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1021306065 105 GRVGEIMSASYAERHKVLPVQVSP-QEVVVATAEPFIDDWVAEVERQARRKVRRVLA 160
Cdd:PRK15489 558 GALADCLPRDLCVRWRVVPFSIGEdGTLNIAVASPLPGEALQEVARAAGRKVAQFIA 614
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
342-366 |
1.50e-03 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 40.78 E-value: 1.50e-03
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
348-427 |
1.55e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.28 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021306065 348 PHGIILVTGPTGSGKTTTLYSTLKRVATEAVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEG------LRSLMRQ-DPD 420
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGelrlrlALALARKlKPD 80
|
....*..
gi 1021306065 421 IIMVGEI 427
Cdd:smart00382 81 VLILDEI 87
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
352-417 |
7.01e-03 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 36.71 E-value: 7.01e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1021306065 352 ILVTGPTGSGKTTTLYSTLKRVATEAVNV---STVEDPIEMIEpsfnQTQVQPQLDFGFTEGLRSLMRQ 417
Cdd:cd01120 1 ILITGPPGSGKTTLLLQFAEQALLSDEPVifiSFLDTILEAIE----DLIEEKKLDIIIIDSLSSLARA 65
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
350-366 |
9.65e-03 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 37.77 E-value: 9.65e-03
|
| |
