|
Name |
Accession |
Description |
Interval |
E-value |
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
251-521 |
1.38e-137 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 399.31 E-value: 1.38e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVQQMMAQwmPQWLALYPVIALPVAFCLTAGIGMVLERTVIRHLYGRPLETLLAT 330
Cdd:TIGR03409 23 ITFGQMGVINMAHGEFIMIGAYTTYVVQQLFSS--PGLADLYLLIAIPLAFLVSALLGALIERTVIRHLYGRPLDTLLAT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRMTFGAQNLEVANPAWLSGGVQVFANLTLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRSM 410
Cdd:TIGR03409 101 WGISLILQQAVRSIFGAPNVPVTAPEWLSGGLEITGALSLPYNRLFIIVLALAVLLALALLLYRTRLGLRVRAVTQNRSM 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEPQ 490
Cdd:TIGR03409 181 AAALGINTRRVDALTFALGSGIAGVAGVALTLIGNVGPTLGQLYIVDSFLVVVFGGVGSLWGTVVAAFGLGVLNKILEYF 260
|
250 260 270
....*....|....*....|....*....|.
gi 1022700648 491 MGAVLGKILILVAIILFIQKRPQGLFALKGR 521
Cdd:TIGR03409 261 TGASLAKVLVLVLIILFLQWRPQGLFALKGR 291
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
251-522 |
2.06e-83 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 260.38 E-value: 2.06e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVQQmmaqwmpqWLALYPVIALPVAFCLTAGIGMVLERTVIRHLYGRP-LETLLA 329
Cdd:COG0559 27 LIFGVMGVINFAHGEFVMLGAYVAYTLAT--------LLGLPLWLALLLAVLVAALLGVLLERLVIRPLRGAPpLALLLA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 330 TWGISLMLIQLVRMTFGAQNLEVanPAWLSGGVQVFaNLTLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRS 409
Cdd:COG0559 99 TIGLSLVLQGLVLLIFGADPRSF--PALLSGSVELG-GVSIPAYRLFIIVVALVLLAALWLFLRRTRLGLAMRAVAQNRE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 410 MAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEP 489
Cdd:COG0559 176 AARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTMGFLLGLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLGAA 255
|
250 260 270
....*....|....*....|....*....|...
gi 1022700648 490 QMGAVLGKILILVAIILFIQKRPQGLFALKGRV 522
Cdd:COG0559 256 YLPSGYKDVVAFVLLILVLLVRPQGLFGRKERE 288
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
251-516 |
4.49e-66 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 214.99 E-value: 4.49e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWmvqqmmaqWMPQWLALYPVIALPVAFCLTAGIGMVLERTVIRHLYGRPLETLLAT 330
Cdd:cd06582 17 LIFGVTGVINFAHGEFYMLGAYVAY--------TLLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGAPLLTLLIT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRMTFGAQnlEVANPAWLSGGVQVFANLTLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRSM 410
Cdd:cd06582 89 FGGLLILLQGLLLIFGGD--PRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEPQ 490
Cdd:cd06582 167 ARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTMGLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLAAAY 246
|
250 260
....*....|....*....|....*.
gi 1022700648 491 MGAVLGKILILVAIILFIQKRPQGLF 516
Cdd:cd06582 247 LSSGYKDAVAFVLLILVLLVRPQGLF 272
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
251-508 |
8.40e-27 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 109.27 E-value: 8.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVQQMmaQWMPQWlalypvIALPVAFCLTAGIGMVLERTVIRHLYGRPLETLLAT 330
Cdd:pfam02653 21 LIYGIAGVINLGHGGFMMLGAYVAAMLLNL--LGPGLW------LALPVGILVGAAVGLLIGILTLRLKINEVIITLLLN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRMTFGAQNlevaNPAWLSGGVQVFANLtLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRSM 410
Cdd:pfam02653 93 LAALGLALFLVTGILGGEG----GTSGITGPSGFPGAF-LSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGP--ELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILE 488
Cdd:pfam02653 168 ARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpsNFGVGLGLDAIAAVVLGGAGSPIGVVIGSLIIGLVQSLGL 247
|
250 260
....*....|....*....|
gi 1022700648 489 PQMGAVLGKILILVAIILFI 508
Cdd:pfam02653 248 GALGSPPELSLLVLGALLIL 267
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
251-516 |
5.69e-17 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 81.89 E-value: 5.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMV--QQMMAQWMPQWLALypVIALPVAFCLTAGIGMVLERTVIRHL-YGRPLETL 327
Cdd:PRK10740 31 MVYGIIGMINFAHGEVYMIGSYVSFMIiaALMMMGIDTSWLLV--AAGFVGAIVIASAYGWSIERVAYRPVrNSKRLIAL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 328 LATWGISLMLIQLVRMTFGAQNLEVA---NPAWLSGGVQVFAnLTLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAV 404
Cdd:PRK10740 109 ISAIGMSIFLQNYVSLTEGSRDVALPslfNGQWVVGHSENFS-ASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRAC 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 405 TQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQL-GNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIF 483
Cdd:PRK10740 188 AEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFyGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIA 267
|
250 260 270
....*....|....*....|....*....|...
gi 1022700648 484 NKILEPQMGAVLGKILILVAIILFIQKRPQGLF 516
Cdd:PRK10740 268 EALSSAYLSTEYKDVVSFALLILVLLVMPTGIL 300
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
115-219 |
2.73e-05 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 43.85 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 115 LISDSVTERRHAARQLQRDAQPEMLGFLQQRAGRETDDVtRQSLMLALANLQ-----------LTSPQAEIRLKAVELLG 183
Cdd:COG1413 25 LADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEV-RAAAAEALGRIGdpeavpaliaaLKDEDPEVRRAAAEALG 103
|
90 100 110
....*....|....*....|....*....|....*.
gi 1022700648 184 QSDDPDVqatLAPLTQAQTEPDARVRAAATESLDRI 219
Cdd:COG1413 104 RLGDPAA---VPALLEALKDPDWEVRRAAARALGRL 136
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
141-216 |
4.13e-04 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 39.24 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 141 FLQQRAGRETDDVTRQSLMLALANLQ-----------LTSPQAEIRLKAVELLGQSDDPDVQATLAPLtqAQTEPDARVR 209
Cdd:pfam13646 3 ALLQALLRDPDPEVRAAAIRALGRIGdpeavpallelLKDEDPAVRRAAAEALGKIGDPEALPALLEL--LRDDDDDVVR 80
|
....*..
gi 1022700648 210 AAATESL 216
Cdd:pfam13646 81 AAAAEAL 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
251-521 |
1.38e-137 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 399.31 E-value: 1.38e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVQQMMAQwmPQWLALYPVIALPVAFCLTAGIGMVLERTVIRHLYGRPLETLLAT 330
Cdd:TIGR03409 23 ITFGQMGVINMAHGEFIMIGAYTTYVVQQLFSS--PGLADLYLLIAIPLAFLVSALLGALIERTVIRHLYGRPLDTLLAT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRMTFGAQNLEVANPAWLSGGVQVFANLTLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRSM 410
Cdd:TIGR03409 101 WGISLILQQAVRSIFGAPNVPVTAPEWLSGGLEITGALSLPYNRLFIIVLALAVLLALALLLYRTRLGLRVRAVTQNRSM 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEPQ 490
Cdd:TIGR03409 181 AAALGINTRRVDALTFALGSGIAGVAGVALTLIGNVGPTLGQLYIVDSFLVVVFGGVGSLWGTVVAAFGLGVLNKILEYF 260
|
250 260 270
....*....|....*....|....*....|.
gi 1022700648 491 MGAVLGKILILVAIILFIQKRPQGLFALKGR 521
Cdd:TIGR03409 261 TGASLAKVLVLVLIILFLQWRPQGLFALKGR 291
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
251-522 |
2.06e-83 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 260.38 E-value: 2.06e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVQQmmaqwmpqWLALYPVIALPVAFCLTAGIGMVLERTVIRHLYGRP-LETLLA 329
Cdd:COG0559 27 LIFGVMGVINFAHGEFVMLGAYVAYTLAT--------LLGLPLWLALLLAVLVAALLGVLLERLVIRPLRGAPpLALLLA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 330 TWGISLMLIQLVRMTFGAQNLEVanPAWLSGGVQVFaNLTLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRS 409
Cdd:COG0559 99 TIGLSLVLQGLVLLIFGADPRSF--PALLSGSVELG-GVSIPAYRLFIIVVALVLLAALWLFLRRTRLGLAMRAVAQNRE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 410 MAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEP 489
Cdd:COG0559 176 AARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTMGFLLGLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLGAA 255
|
250 260 270
....*....|....*....|....*....|...
gi 1022700648 490 QMGAVLGKILILVAIILFIQKRPQGLFALKGRV 522
Cdd:COG0559 256 YLPSGYKDVVAFVLLILVLLVRPQGLFGRKERE 288
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
251-516 |
4.49e-66 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 214.99 E-value: 4.49e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWmvqqmmaqWMPQWLALYPVIALPVAFCLTAGIGMVLERTVIRHLYGRPLETLLAT 330
Cdd:cd06582 17 LIFGVTGVINFAHGEFYMLGAYVAY--------TLLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGAPLLTLLIT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRMTFGAQnlEVANPAWLSGGVQVFANLTLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRSM 410
Cdd:cd06582 89 FGGLLILLQGLLLIFGGD--PRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILEPQ 490
Cdd:cd06582 167 ARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTMGLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLAAAY 246
|
250 260
....*....|....*....|....*.
gi 1022700648 491 MGAVLGKILILVAIILFIQKRPQGLF 516
Cdd:cd06582 247 LSSGYKDAVAFVLLILVLLVRPQGLF 272
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
251-508 |
8.40e-27 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 109.27 E-value: 8.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVQQMmaQWMPQWlalypvIALPVAFCLTAGIGMVLERTVIRHLYGRPLETLLAT 330
Cdd:pfam02653 21 LIYGIAGVINLGHGGFMMLGAYVAAMLLNL--LGPGLW------LALPVGILVGAAVGLLIGILTLRLKINEVIITLLLN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRMTFGAQNlevaNPAWLSGGVQVFANLtLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRSM 410
Cdd:pfam02653 93 LAALGLALFLVTGILGGEG----GTSGITGPSGFPGAF-LSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQLGNVGP--ELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIFNKILE 488
Cdd:pfam02653 168 ARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpsNFGVGLGLDAIAAVVLGGAGSPIGVVIGSLIIGLVQSLGL 247
|
250 260
....*....|....*....|
gi 1022700648 489 PQMGAVLGKILILVAIILFI 508
Cdd:pfam02653 248 GALGSPPELSLLVLGALLIL 267
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
251-516 |
3.48e-18 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 84.42 E-value: 3.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVQQMmaqwmpqwLALYPVIALPVAFCLTAGIGMVLERTVIRhLYGRPLetLLAT 330
Cdd:cd06581 13 LLLGYAGQLSLGHAAFFGIGAYTAALLATR--------LGLPFWLALLAAGLVAALVGLLLGLPALR-LRGVYF--AIAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRmtfgaqnlevaNPAWLSGGVQVFANLTLPWNRLVVLGFVLLVLFFTWLI----------LNKTRLGLN 400
Cdd:cd06581 82 LAFAEIVRLLAL-----------NWSSLTGGSNGLSGIPPPLLGGLLLSSPLAFYYLVLAVlllvllllrrLVRSPFGRA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 401 VRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS-QLGNVGPE-LGQGYIIDSFLVVVLGGVGQLAGSVAAAF 478
Cdd:cd06581 151 LRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAhYLGFVSPEsFGFALSIELLLMVVLGGLGSLLGPVLGAA 230
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1022700648 479 GLGIFNKILEPQMGA----VLGkiLILVAIILFiqkRPQGLF 516
Cdd:cd06581 231 LLVLLPELLRSLGPGlrllVFG--LLLILVVLF---LPRGLV 267
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
251-516 |
5.69e-17 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 81.89 E-value: 5.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMV--QQMMAQWMPQWLALypVIALPVAFCLTAGIGMVLERTVIRHL-YGRPLETL 327
Cdd:PRK10740 31 MVYGIIGMINFAHGEVYMIGSYVSFMIiaALMMMGIDTSWLLV--AAGFVGAIVIASAYGWSIERVAYRPVrNSKRLIAL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 328 LATWGISLMLIQLVRMTFGAQNLEVA---NPAWLSGGVQVFAnLTLPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAV 404
Cdd:PRK10740 109 ISAIGMSIFLQNYVSLTEGSRDVALPslfNGQWVVGHSENFS-ASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRAC 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 405 TQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQL-GNVGPELGQGYIIDSFLVVVLGGVGQLAGSVAAAFGLGIF 483
Cdd:PRK10740 188 AEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFyGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIA 267
|
250 260 270
....*....|....*....|....*....|...
gi 1022700648 484 NKILEPQMGAVLGKILILVAIILFIQKRPQGLF 516
Cdd:PRK10740 268 EALSSAYLSTEYKDVVSFALLILVLLVMPTGIL 300
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
251-524 |
3.35e-15 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 75.89 E-value: 3.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVQQmmaqwmpqWLALYPVIALPVAFCLTAGIGMVLERTVIRhLYGRPLetLLAT 330
Cdd:COG4177 23 LLLGYTGLLSLGHAAFFGIGAYAAALLTT--------HLGLPFWLALLLAGLVAALLGLLIGLPALR-LRGDYL--AIAT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRmtfgaqnlevaNPAWLSGGVQ--------VFANLTLPWNRLVVLGFVLLVLFFTWLILN--KTRLGLN 400
Cdd:COG4177 92 LAFAEIVRLLAL-----------NLESLTGGADglsgiprpTLFGLDLGSPLAFYYLVLALLVLVLLLLRRlvRSRFGRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 401 VRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPE-LGQGYIIDSFLVVVLGGVGQLAGSVAAAF 478
Cdd:COG4177 161 LRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYaHYVGFVSPEsFSFLLSIEILLMVVLGGLGSLLGPVLGAV 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1022700648 479 GLGIFNKILEPQMGA---VLGkiLILVAIILFiqkRPQGLFALKGRVTD 524
Cdd:COG4177 241 LLVLLPELLRSLPEYrllIFG--LLLILVVLF---RPRGLAGLLRRLRR 284
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
251-504 |
3.52e-15 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 75.78 E-value: 3.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 251 ITYGLLGVINMAHGEMLMLGAYATWMVqqMMAQWMPqWLALypVIALPVAFCLTAGIGMVLERTVIRHLygrpletlLAT 330
Cdd:cd06574 13 IVFRILGFPDLTVDGSFPLGAAVAAIL--IVAGYNP-WLAL--IAAILAGAAAGLVTGFLHTRLKINGL--------LAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 331 WGISLMLIQLVRMTFGAQNLEVANPAWLSGGVQVFANLTlPWNRLVVLGFVLLVLFFTWLILNKTRLGLNVRAVTQNRSM 410
Cdd:cd06574 80 ILIMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISG-TLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDM 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 411 AACCGVPTGRVDMLAFGLGSGIAGLGGVALSQ-LGNVGPELGQGYIIDSFLVVVLGGvgqlAGSVAAAFGLGIFNKILep 489
Cdd:cd06574 159 ARSLGINVDRTRILGLVISNALAALGGALYAQyQGFADVNMGIGTGVIGLAAVIIGG----AIVGRRTIKASILGVII-- 232
|
250
....*....|....*
gi 1022700648 490 qmGAVLGKILILVAI 504
Cdd:cd06574 233 --GAILYRIALALAL 245
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
388-506 |
4.18e-14 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 72.44 E-value: 4.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 388 TWLILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPELGQGYIIDSFLVVVLGG 466
Cdd:cd06579 132 AWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLaARLGSAQPTAGNGYELDAIAAVVLGG 211
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1022700648 467 V------GQLAGSVAAAFGLGIFNKIL------EPQMGAVLGkILILVAIIL 506
Cdd:cd06579 212 TsltggrGSVLGTLLGALLLGVLNNGLnllgvsSFWQQIVKG-AILLLAVAL 262
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
388-506 |
5.14e-14 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 72.83 E-value: 5.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 388 TWLILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPELGQGYIIDSFLVVVLGG 466
Cdd:COG1172 182 AWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLaARLGSAQPNAGSGYELDAIAAVVIGG 261
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1022700648 467 V------GQLAGSVAAAFGLGIFNKILePQMG-------AVLGkILILVAIIL 506
Cdd:COG1172 262 TsltggrGSVLGTLLGALILGVLNNGL-NLLGvssywqqIVKG-AIILLAVLL 312
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
388-508 |
7.17e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 56.29 E-value: 7.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 388 TWLILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS--QLGNVGPELGQGYIIDSFLVVVLG 465
Cdd:cd06580 108 VWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVlgVQGRFTEGMSAGYGFIAIAVALLG 187
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1022700648 466 GvGQLAGSVAAAFGLGIFNKI---LEPQMGAVLGKILILVAIILFI 508
Cdd:cd06580 188 R-WNPLGILLAALLFGALEAGgiaLQRSGGVPSELVQVLPGIIVLF 232
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
389-507 |
1.84e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 56.28 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 389 WLILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGV--ALSQLGNVGPELGQGYIIDSFLVVVLGG 466
Cdd:COG4603 211 WVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAveVLGVQGRLTPGFSPGYGFTGIAVALLGR 290
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1022700648 467 vGQLAGSVAAAFGLGIFNK---ILEPQMGAVLGKILILVAIILF 507
Cdd:COG4603 291 -NNPLGIILAALLFGALYVggdAMQRALGVPSEIVDVIQGLIIL 333
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
388-511 |
2.73e-06 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 49.30 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 388 TWLILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS--QLGNVGPEL--GQGYIidSFLVVV 463
Cdd:COG1079 161 VWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGAYLSlgYVGSFTEGMtaGRGFI--ALAAVI 238
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1022700648 464 LGG---VGQLAGSV------AAAFGLGIFNKILEPQMGAVLGKILILVAIILFIQKR 511
Cdd:COG1079 239 FGRwrpLGALLAALlfgfadALQLRLQALGIGIPSQLLLMLPYVLTILVLAGFSGRA 295
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
115-219 |
2.73e-05 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 43.85 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 115 LISDSVTERRHAARQLQRDAQPEMLGFLQQRAGRETDDVtRQSLMLALANLQ-----------LTSPQAEIRLKAVELLG 183
Cdd:COG1413 25 LADEDPDVRAAAARALGRLGDPRAVPALLEALKDPDPEV-RAAAAEALGRIGdpeavpaliaaLKDEDPEVRRAAAEALG 103
|
90 100 110
....*....|....*....|....*....|....*.
gi 1022700648 184 QSDDPDVqatLAPLTQAQTEPDARVRAAATESLDRI 219
Cdd:COG1413 104 RLGDPAA---VPALLEALKDPDWEVRRAAARALGRL 136
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
390-482 |
1.05e-04 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 44.56 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 390 LILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS-------QLGNVGPELgqgyiiDSFLVV 462
Cdd:PRK11618 178 FLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSlytsagyALAAVGVEL------DAIAAV 251
|
90 100
....*....|....*....|....*.
gi 1022700648 463 VL------GGVGQLAGSVaaaFGLGI 482
Cdd:PRK11618 252 VIggtlltGGVGTVLGTL---FGVLI 274
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
389-510 |
1.33e-04 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 44.29 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 389 WLILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVALS-QLGNVGPELGQGYIIDSFLVVVLGGV 467
Cdd:PRK09478 198 WVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAgRIGSATNNLGFMYELDAIAACVVGGV 277
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1022700648 468 ------GQLAGSVAaafGLGIFNKI--------LEPQMGAVLGKILILVAIILFIQK 510
Cdd:PRK09478 278 sfsggvGTVIGVVT---GVIIFTVInygltyigVNPYWQYIIKGAIIIFAVALDSLK 331
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
123-219 |
2.68e-04 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 41.15 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 123 RRHAARQLQRDAQPEMLGFLQQRAGRETDDVtRQSLMLALANLQ-----------LTSPQAEIRLKAVELLGQSDDPDVq 191
Cdd:COG1413 2 RRAAARALGRLGDPAAVPALIAALADEDPDV-RAAAARALGRLGdpravpalleaLKDPDPEVRAAAAEALGRIGDPEA- 79
|
90 100
....*....|....*....|....*...
gi 1022700648 192 atLAPLTQAQTEPDARVRAAATESLDRI 219
Cdd:COG1413 80 --VPALIAALKDEDPEVRRAAAEALGRL 105
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
141-216 |
4.13e-04 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 39.24 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 141 FLQQRAGRETDDVTRQSLMLALANLQ-----------LTSPQAEIRLKAVELLGQSDDPDVQATLAPLtqAQTEPDARVR 209
Cdd:pfam13646 3 ALLQALLRDPDPEVRAAAIRALGRIGdpeavpallelLKDEDPAVRRAAAEALGKIGDPEALPALLEL--LRDDDDDVVR 80
|
....*..
gi 1022700648 210 AAATESL 216
Cdd:pfam13646 81 AAAAEAL 87
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
388-487 |
4.68e-04 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 42.41 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 388 TWLILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPELGQGYIIDSFLVVVLGG 466
Cdd:PRK15432 173 MAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFaSQIGFIPNQTGTGLEMKAIAACVLGG 252
|
90 100
....*....|....*....|....*..
gi 1022700648 467 V------GQLAGSVAAAFGLGIFNKIL 487
Cdd:PRK15432 253 IsllggsGTIIGAVLGAYFLTQIDSVL 279
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
389-510 |
8.62e-04 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 41.68 E-value: 8.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 389 WLILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGG-VALSQLGNVGPELGQG---YIIDSFLV--- 461
Cdd:PRK09699 177 WFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGvVSTARLGAAEPLAGMGfetYAIASAIIggt 256
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1022700648 462 VVLGGVGQLAGSVAAAFGLGIFNKILEP-------QMGAVLGKILILVAIILFIQK 510
Cdd:PRK09699 257 SFFGGKGRIFSVVIGGLIIGTINNGLNIlqvqtyyQLVVMGGLIIAAVALDRLISK 312
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
161-219 |
1.27e-03 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 38.09 E-value: 1.27e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1022700648 161 ALANLQLTSPQAEIRLKAVELLGQSDDPDVQATLAPLTQaqtEPDARVRAAATESLDRI 219
Cdd:pfam13646 3 ALLQALLRDPDPEVRAAAIRALGRIGDPEAVPALLELLK---DEDPAVRRAAAEALGKI 58
|
|
| Zwint |
pfam15556 |
ZW10 interactor; This family of proteins is found in eukaryotes. Proteins in this family are ... |
116-215 |
1.79e-03 |
|
ZW10 interactor; This family of proteins is found in eukaryotes. Proteins in this family are typically between 127 and 281 amino acids in length.
Pssm-ID: 464766 [Multi-domain] Cd Length: 252 Bit Score: 40.35 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 116 ISDSVTERRHAARQ-LQRDAQPemLGFLQQRAGRETDDVTR-QSLMLALANLQ--LTSPQAEIrlkavELLGQSDDPDVQ 191
Cdd:pfam15556 142 VSAEVRERQTGTQQeLERLYQE--LGTLKQQAGQERDKLQRhQTFLQLLYTLQgkLLFPEAEA-----ELPQKLDLPEDK 214
|
90 100
....*....|....*....|....*.
gi 1022700648 192 ATLAPLTQAQTEPDA--RVRAAATES 215
Cdd:pfam15556 215 SQQLTQPQEQNTGDTmgRDRAVSSKA 240
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
390-475 |
1.99e-03 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 40.43 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022700648 390 LILNKTRLGLNVRAVTQNRSMAACCGVPTGRVDMLAFGLGSGIAGLGGVAL-SQLGNVGPELGQGYIIDSFLVVVLGGVg 468
Cdd:PRK11285 194 FLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILaSRMTSGQPMTSIGFELIVISACVLGGV- 272
|
....*..
gi 1022700648 469 QLAGSVA 475
Cdd:PRK11285 273 SLKGGIA 279
|
|
| |
